>ref|XM_473883.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1602

 Score =  200 bits (101), Expect = 4e-48
 Identities = 212/249 (85%)
 Strand = Plus / Minus

                                                                        
Query: 361  tgggagatgatctcccagtcctccctcaccgacgtgacgtcgccacgtttctcgtggtgc 420
            ||||||||||||||||||||||| || ||||| ||||  || ||  |||||||||||| |
Sbjct: 1421 tgggagatgatctcccagtcctctctaaccgatgtgatatccccgtgtttctcgtggtac 1362

                                                                        
Query: 421  ttctcgatctcgtagatggttggcaggatgacatagtcattgagggggtcgtagaatggg 480
            |||||||||||| ||   ||||| || ||||| ||||| |||||||| ||||||||||||
Sbjct: 1361 ttctcgatctcgaaggctgttgggagtatgacgtagtcgttgaggggatcgtagaatggg 1302

                                                                        
Query: 481  tcaggttcgcctgcgtgcagccagtgctggactatgcggaacacgtggtggtcgcacacg 540
            ||||| || || || || ||||||||||| | ||| |||||||||||  | || || |||
Sbjct: 1301 tcaggctcaccggcatggagccagtgctgaattatccggaacacgtgacgatcacagacg 1242

                                                                        
Query: 541  attcctcggtggtcggcagcaaccccaattctcgccactgcatcaaggccgtccgccttt 600
            |||||||||||||| ||||||||||||| ||| ||||||||||| ||||| || ||||||
Sbjct: 1241 attcctcggtggtctgcagcaaccccaactcttgccactgcatcgaggccatctgccttt 1182

                     
Query: 601  gctgattct 609
            |||||||||
Sbjct: 1181 gctgattct 1173



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 191  tgactccaacagccctgacttccacatgctgcc 223
            |||||||||| ||||| ||||||||||||||||
Sbjct: 1588 tgactccaactgccctaacttccacatgctgcc 1556

>dbj|AK069739.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023027J22, full
            insert sequence
          Length = 2334

 Score =  200 bits (101), Expect = 4e-48
 Identities = 212/249 (85%)
 Strand = Plus / Minus

                                                                        
Query: 361  tgggagatgatctcccagtcctccctcaccgacgtgacgtcgccacgtttctcgtggtgc 420
            ||||||||||||||||||||||| || ||||| ||||  || ||  |||||||||||| |
Sbjct: 1855 tgggagatgatctcccagtcctctctaaccgatgtgatatccccgtgtttctcgtggtac 1796

                                                                        
Query: 421  ttctcgatctcgtagatggttggcaggatgacatagtcattgagggggtcgtagaatggg 480
            |||||||||||| ||   ||||| || ||||| ||||| |||||||| ||||||||||||
Sbjct: 1795 ttctcgatctcgaaggctgttgggagtatgacgtagtcgttgaggggatcgtagaatggg 1736

                                                                        
Query: 481  tcaggttcgcctgcgtgcagccagtgctggactatgcggaacacgtggtggtcgcacacg 540
            ||||| || || || || ||||||||||| | ||| |||||||||||  | || || |||
Sbjct: 1735 tcaggctcaccggcatggagccagtgctgaattatccggaacacgtgacgatcacagacg 1676

                                                                        
Query: 541  attcctcggtggtcggcagcaaccccaattctcgccactgcatcaaggccgtccgccttt 600
            |||||||||||||| ||||||||||||| ||| ||||||||||| ||||| || ||||||
Sbjct: 1675 attcctcggtggtctgcagcaaccccaactcttgccactgcatcgaggccatctgccttt 1616

                     
Query: 601  gctgattct 609
            |||||||||
Sbjct: 1615 gctgattct 1607



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 191  tgactccaacagccctgacttccacatgctgcc 223
            |||||||||| ||||| ||||||||||||||||
Sbjct: 2022 tgactccaactgccctaacttccacatgctgcc 1990

>emb|AL662950.2|OSJN00152 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0008M17,
             complete sequence
          Length = 133279

 Score =  178 bits (90), Expect = 1e-41
 Identities = 195/230 (84%)
 Strand = Plus / Minus

                                                                         
Query: 361   tgggagatgatctcccagtcctccctcaccgacgtgacgtcgccacgtttctcgtggtgc 420
             ||||||||||||||||||||||| || ||||| ||||  || ||  |||||||||||| |
Sbjct: 74611 tgggagatgatctcccagtcctctctaaccgatgtgatatccccgtgtttctcgtggtac 74552

                                                                         
Query: 421   ttctcgatctcgtagatggttggcaggatgacatagtcattgagggggtcgtagaatggg 480
             |||||||||||| ||   ||||| || ||||| ||||| |||||||| ||||||||||||
Sbjct: 74551 ttctcgatctcgaaggctgttgggagtatgacgtagtcgttgaggggatcgtagaatggg 74492

                                                                         
Query: 481   tcaggttcgcctgcgtgcagccagtgctggactatgcggaacacgtggtggtcgcacacg 540
             ||||| || || || || ||||||||||| | ||| |||||||||||  | || || |||
Sbjct: 74491 tcaggctcaccggcatggagccagtgctgaattatccggaacacgtgacgatcacagacg 74432

                                                               
Query: 541   attcctcggtggtcggcagcaaccccaattctcgccactgcatcaaggcc 590
             |||||||||||||| ||||||||||||| ||| ||||||||||| |||||
Sbjct: 74431 attcctcggtggtctgcagcaaccccaactcttgccactgcatcgaggcc 74382



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 191   tgactccaacagccctgacttccacatgctgcc 223
             |||||||||| ||||| ||||||||||||||||
Sbjct: 74778 tgactccaactgccctaacttccacatgctgcc 74746

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  178 bits (90), Expect = 1e-41
 Identities = 195/230 (84%)
 Strand = Plus / Minus

                                                                            
Query: 361      tgggagatgatctcccagtcctccctcaccgacgtgacgtcgccacgtttctcgtggtgc 420
                ||||||||||||||||||||||| || ||||| ||||  || ||  |||||||||||| |
Sbjct: 31253009 tgggagatgatctcccagtcctctctaaccgatgtgatatccccgtgtttctcgtggtac 31252950

                                                                            
Query: 421      ttctcgatctcgtagatggttggcaggatgacatagtcattgagggggtcgtagaatggg 480
                |||||||||||| ||   ||||| || ||||| ||||| |||||||| ||||||||||||
Sbjct: 31252949 ttctcgatctcgaaggctgttgggagtatgacgtagtcgttgaggggatcgtagaatggg 31252890

                                                                            
Query: 481      tcaggttcgcctgcgtgcagccagtgctggactatgcggaacacgtggtggtcgcacacg 540
                ||||| || || || || ||||||||||| | ||| |||||||||||  | || || |||
Sbjct: 31252889 tcaggctcaccggcatggagccagtgctgaattatccggaacacgtgacgatcacagacg 31252830

                                                                  
Query: 541      attcctcggtggtcggcagcaaccccaattctcgccactgcatcaaggcc 590
                |||||||||||||| ||||||||||||| ||| ||||||||||| |||||
Sbjct: 31252829 attcctcggtggtctgcagcaaccccaactcttgccactgcatcgaggcc 31252780



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 191      tgactccaacagccctgacttccacatgctgcc 223
                |||||||||| ||||| ||||||||||||||||
Sbjct: 31253176 tgactccaactgccctaacttccacatgctgcc 31253144

>gb|AC127586.4| Mus musculus BAC clone RP24-142A16 from chromosome 7, complete sequence
          Length = 164692

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 53    atttacaagcagtacaccatatt 75
             |||||||||||||||||||||||
Sbjct: 38251 atttacaagcagtacaccatatt 38273

>gb|AC159005.3| Mus musculus BAC clone RP23-67F4 from chromosome 7, complete sequence
          Length = 230018

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 53     atttacaagcagtacaccatatt 75
              |||||||||||||||||||||||
Sbjct: 165634 atttacaagcagtacaccatatt 165656

>gb|AC136971.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0032K12,
              complete sequence
          Length = 166936

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                               
Query: 149    tacttaagtactgcaataggccccgtagctagc 181
              |||||| ||||||||| |||| |||||||||||
Sbjct: 119342 tacttacgtactgcaaaaggcaccgtagctagc 119310

>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 258     ctgcgcctcgtccagcaggcc 278
               |||||||||||||||||||||
Sbjct: 2864566 ctgcgcctcgtccagcaggcc 2864546

>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence
          Length = 4895836

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 420     cttctcgatctcgtagatggt 440
               |||||||||||||||||||||
Sbjct: 3798739 cttctcgatctcgtagatggt 3798759

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 149     tacttaagtactgcaataggccccgtagctagc 181
               |||||| ||||||||| |||| |||||||||||
Sbjct: 6994084 tacttacgtactgcaaaaggcaccgtagctagc 6994052

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 347     cgtcgccgtcagtgtgggaga 367
               |||||||||||||||||||||
Sbjct: 9562655 cgtcgccgtcagtgtgggaga 9562675

>dbj|AP005428.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0693E08
          Length = 157969

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 347   cgtcgccgtcagtgtgggaga 367
             |||||||||||||||||||||
Sbjct: 26873 cgtcgccgtcagtgtgggaga 26893

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                
Query: 149     tacttaagtactgcaataggccccgtagctagc 181
               |||||| ||||||||| |||| |||||||||||
Sbjct: 7060551 tacttacgtactgcaaaaggcaccgtagctagc 7060519

>ref|XM_536814.2| PREDICTED: Canis familiaris similar to RGD, leucine-rich repeat,
            tropomodulin and proline-rich containing protein
            (LOC479683), mRNA
          Length = 4128

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 255  ggcctgcgcctcgtccagcaggcc 278
            |||||||||| |||||||||||||
Sbjct: 1788 ggcctgcgccacgtccagcaggcc 1765

>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 255   ggcctgcgcctcgtccagca 274
             ||||||||||||||||||||
Sbjct: 65854 ggcctgcgcctcgtccagca 65873

>emb|AL590626.9| Mouse DNA sequence from clone RP23-143O13 on chromosome 13 Contains the
              3' end of a novel gene and a CpG island, complete sequence
          Length = 179282

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 49     ggatatttacaagcagtaca 68
              ||||||||||||||||||||
Sbjct: 114839 ggatatttacaagcagtaca 114858

>gb|AE012112.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 20 of
            460 of the complete genome
          Length = 12215

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 262  gcctcgtccagcaggccatc 281
            ||||||||||||||||||||
Sbjct: 9941 gcctcgtccagcaggccatc 9922

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 262    gcctcgtccagcaggccatc 281
              ||||||||||||||||||||
Sbjct: 219396 gcctcgtccagcaggccatc 219377

>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 203     ccctgacttccacatgctgc 222
               ||||||||||||||||||||
Sbjct: 1036218 ccctgacttccacatgctgc 1036237

>gb|AC154549.2| Mus musculus BAC clone RP23-443L15 from chromosome 17, complete
             sequence
          Length = 191523

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   actccaacagccctgacttc 212
             ||||||||||||||||||||
Sbjct: 86722 actccaacagccctgacttc 86703

>gb|AC008736.6|AC008736 Homo sapiens chromosome 19 clone CTD-2538C1, complete sequence
          Length = 191925

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   gagatgcagacagcgcacca 312
             ||||||||||||||||||||
Sbjct: 64974 gagatgcagacagcgcacca 64993

>dbj|BA000011.4| Thermoplasma volcanium GSS1 DNA, complete genome
          Length = 1584804

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 59     aagcagtacaccatatttac 78
              ||||||||||||||||||||
Sbjct: 876701 aagcagtacaccatatttac 876720

>gb|AC154676.2| Mus musculus BAC clone RP23-146O19 from 17, complete sequence
          Length = 180352

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 193   actccaacagccctgacttc 212
             ||||||||||||||||||||
Sbjct: 18368 actccaacagccctgacttc 18349

>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 255     ggcctgcgcctcgtccagca 274
               ||||||||||||||||||||
Sbjct: 3194557 ggcctgcgcctcgtccagca 3194576

>emb|AM114763.1| Platynereis dumerilii mRNA for crooked neck protein (crn gene)
          Length = 2340

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  atttacaagcagtacaccat 72
           ||||||||||||||||||||
Sbjct: 865 atttacaagcagtacaccat 884


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,979,671
Number of Sequences: 3902068
Number of extensions: 3979671
Number of successful extensions: 76825
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76448
Number of HSP's gapped (non-prelim): 377
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)