ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal35i06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete seq... 54 2e-04
2emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete ... 40 2.8
3gb|AC068629.35| Homo sapiens 12 BAC RP11-162A11 (Roswell Park Ca... 40 2.8
4gb|AC114488.3| Homo sapiens chromosome 1 clone RP11-73M7, comple... 40 2.8

>gb|AC169376.2| Sorghum bicolor clone SB_BBc0046M17, complete sequence
          Length = 127914

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                            
Query: 161   gcctggatggacgtgggctgtatgacggcgtccagctcggccctcat 207
             |||||||||||||||||||| |||| || |||||| |||| ||||||
Sbjct: 12379 gcctggatggacgtgggctggatgatggagtccaggtcggacctcat 12333



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>emb|AL939131.1|SCO939131 Streptomyces coelicolor A3(2) complete genome; segment 28/29
          Length = 303550

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 184    gacggcgtccagctcggccc 203
              ||||||||||||||||||||
Sbjct: 184961 gacggcgtccagctcggccc 184942



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>gb|AC068629.35| Homo sapiens 12 BAC RP11-162A11 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 191117

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    tggatggacgtgggctgtat 183
              ||||||||||||||||||||
Sbjct: 114411 tggatggacgtgggctgtat 114392



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>gb|AC114488.3| Homo sapiens chromosome 1 clone RP11-73M7, complete sequence
          Length = 184854

 Score = 40.1 bits (20), Expect = 2.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 164    tggatggacgtgggctgtat 183
              ||||||||||||||||||||
Sbjct: 142422 tggatggacgtgggctgtat 142403


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,430,419
Number of Sequences: 3902068
Number of extensions: 1430419
Number of successful extensions: 70349
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70335
Number of HSP's gapped (non-prelim): 14
length of query: 218
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 196
effective length of database: 17,147,199,772
effective search space: 3360851155312
effective search space used: 3360851155312
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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