ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal7p19 |
|---|---|
| Clone Library Name | barley_pub |
>PTPRZ_RAT (Q62656) Receptor-type tyrosine-protein phosphatase zeta precursor| (EC 3.1.3.48) (R-PTP-zeta) (Phosphacan) (3F8 chondroitin sulfate proteoglycan) (3H1 keratan sulfate proteoglycan) Length = 2316 Score = 34.3 bits (77), Expect = 0.32 Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%) Frame = +2 Query: 347 MPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*S--PILQGSPACPADPGSLH 520 +PS P+ LTETP+ E S + P S S+ S+ +H + P+L SP+ P SL Sbjct: 1207 LPSGPRDPVLTETPMVEQSSSSVSLPLASESASSKSTLHFTSVPVLNMSPS-DVHPTSLQ 1265 Query: 521 QEPVSQHSTEE 553 + V HS EE Sbjct: 1266 RLTV-PHSREE 1275
>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)| (LC collagen) Length = 2944 Score = 33.5 bits (75), Expect = 0.55 Identities = 22/61 (36%), Positives = 26/61 (42%) Frame = -3 Query: 510 PGSAGHAGEPCSMGDQWTHCSETEDGLRGGFRSIGLEASRRGVSVRGAI*GGEGMHLPGR 331 PGS G AG P + G S G RG G + G + GGEG LPGR Sbjct: 1307 PGSPGRAGNPGTPGAPGLKGSPGLPGPRGDPGERGPRGPKGEPGAPGQVIGGEGPGLPGR 1366 Query: 330 R 328 + Sbjct: 1367 K 1367
>CSKI1_RAT (Q8VHK2) Caskin-1 (CASK-interacting protein 1)| Length = 1430 Score = 31.6 bits (70), Expect = 2.1 Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 5/76 (6%) Frame = +2 Query: 335 PGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSPACPAD--- 505 P P P + PL PL + S +KPP SP + Q V +QGSP PA Sbjct: 1196 PPPAEPPPTDLMPLPPLPLPDGSARKPVKPPVSPKPILAQPV---SKIQGSPT-PASKKV 1251 Query: 506 --PGSLHQEPVSQHST 547 PG E H T Sbjct: 1252 PLPGPGSPEVKRAHGT 1267
>DOT1L_DROME (Q8INR6) Histone-lysine N-methyltransferase, H3 lysine-79 specific| (EC 2.1.1.43) (Histone H3-K79 methyltransferase) (H3-K79-HMTase) (Protein grappa) (DOT1-like protein) (dDOT1L) Length = 1848 Score = 31.2 bits (69), Expect = 2.7 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 4/70 (5%) Frame = +2 Query: 356 PPQIAPLTETPLREASRP----MLLKPPRSPSSVSEQCVH*SPILQGSPACPADPGSLHQ 523 PPQ PL P ++ ++PP PSS S Q Q SPA A L Q Sbjct: 1290 PPQTQPLELLPRASSANSDYSGYRIRPPSRPSSNSSQ----PDYTQVSPAKMALRRHLSQ 1345 Query: 524 EPVSQHSTEE 553 E +SQH T + Sbjct: 1346 EKLSQHVTPQ 1355
>COLQ_RAT (O35167) Acetylcholinesterase collagenic tail peptide precursor| (AChE Q subunit) (Acetylcholinesterase-associated collagen) Length = 458 Score = 31.2 bits (69), Expect = 2.7 Identities = 24/71 (33%), Positives = 30/71 (42%) Frame = +2 Query: 299 IPLLHQIQ*GRRPGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPIL 478 +P L Q + G C+ PP PL P SR LL P ++ E SP + Sbjct: 37 LPGLDQKKRGNHKACCLLMPPP-PPLFPPPFFRGSRSPLLSPDMK--NLLELEASPSPCM 93 Query: 479 QGSPACPADPG 511 QGS P PG Sbjct: 94 QGSLGSPGPPG 104
>SPB4_GIBZE (Q4HVW2) ATP-dependent rRNA helicase SPB4 (EC 3.6.1.-)| Length = 637 Score = 31.2 bits (69), Expect = 2.7 Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 7/91 (7%) Frame = -1 Query: 593 NVLISDSGRRIFVF-------PQCYAEKQALGEVSQDLLDTQVNPAVWEISGHIVLKRRT 435 NVLIS GR + + PQ E L E + LLD P + +I H+ +RRT Sbjct: 164 NVLISSPGRLVELMSSPHVHCPQSSFEVLVLDEADR-LLDLGFKPDLQKILSHLPKQRRT 222 Query: 434 DFEEASEASAWRLLAEVSLSEERFEEVKACI 342 AS + A + V L EVK I Sbjct: 223 GLFSASVSEAVGEIIRVGLRNPVKIEVKVKI 253
>RTN4_HUMAN (Q9NQC3) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| (Foocen) (Neuroendocrine-specific protein) (NSP) (Neuroendocrine-specific protein C homolog) (RTN-x) (Reticulon-5) Length = 1192 Score = 30.8 bits (68), Expect = 3.6 Identities = 21/66 (31%), Positives = 28/66 (42%) Frame = +2 Query: 350 PSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSPACPADPGSLHQEP 529 PSP A ++ + L E P PP P+SVS Q P+ PA P S P Sbjct: 120 PSPLSAAAVSPSKLPEDDEPPARPPPPPPASVSPQA---EPVWTPPAPAPAAPPSTPAAP 176 Query: 530 VSQHST 547 + S+ Sbjct: 177 KRRGSS 182
>MYO15_HUMAN (Q9UKN7) Myosin-15 (Myosin XV) (Unconventional myosin-15)| Length = 3530 Score = 30.8 bits (68), Expect = 3.6 Identities = 25/61 (40%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Frame = +2 Query: 350 PSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSPACPADP-GSLHQE 526 P PQ AP T + P + PPR PSS SP L G P PA P GSL + Sbjct: 644 PPAPQPAPRTLSHWSALLSPPV--PPRPPSSGPPPAPPLSPALSGLPR-PASPYGSLRRH 700 Query: 527 P 529 P Sbjct: 701 P 701
>COLQ_MOUSE (O35348) Acetylcholinesterase collagenic tail peptide (AChE Q| subunit) (Acetylcholinesterase-associated collagen) (Fragment) Length = 236 Score = 30.8 bits (68), Expect = 3.6 Identities = 24/71 (33%), Positives = 30/71 (42%) Frame = +2 Query: 299 IPLLHQIQ*GRRPGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPIL 478 +P L Q + G C+ PP PL P SR LL P ++ E SP + Sbjct: 1 LPGLDQKKRGSHKACCLLMPPP-PPLFPPPFFRGSRSPLLSPDMK--NLLELEASPSPCI 57 Query: 479 QGSPACPADPG 511 QGS P PG Sbjct: 58 QGSLGSPGPPG 68
>CINA_GEOKA (Q5L0F7) CinA-like protein| Length = 414 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/50 (36%), Positives = 25/50 (50%) Frame = -1 Query: 533 KQALGEVSQDLLDTQVNPAVWEISGHIVLKRRTDFEEASEASAWRLLAEV 384 + AL DL+D Q NP + ++G + R + EA A RLL EV Sbjct: 190 ESALETAIADLIDAQSNPTIAPLAGDGEVTLRLTAKHQDEAEAKRLLDEV 239
>MILK1_HUMAN (Q8N3F8) Molecule interacting with Rab13 (MIRab13) (MICAL-like| protein 1) Length = 863 Score = 30.0 bits (66), Expect = 6.1 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%) Frame = +2 Query: 335 PGRCMPSPP-QIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSPACPADPG 511 P PSP + L+ + + LL+PP P S SE VH +P P +P Sbjct: 500 PPSATPSPALSVESLSSESASQTAGAELLEPPAVPKSSSEPAVH-------APGTPGNPV 552 Query: 512 SL 517 SL Sbjct: 553 SL 554
>CO1A2_RAT (P02466) Collagen alpha-2(I) chain precursor| Length = 1372 Score = 30.0 bits (66), Expect = 6.1 Identities = 25/69 (36%), Positives = 29/69 (42%) Frame = -3 Query: 534 ETGSW*SEPGSAGHAGEPCSMGDQWTHCSETEDGLRGGFRSIGLEASRRGVSVRGAI*GG 355 ETG+ EPGSAG G P G++ S E G G GL S + GA Sbjct: 362 ETGNK-GEPGSAGAQGPPGPSGEEGKRGSPGEPGSAGPAGPPGLRGSPGSRGLPGADGRA 420 Query: 354 EGMHLPGRR 328 M PG R Sbjct: 421 GVMGPPGNR 429
>TEGU_EHV1B (P28955) Large tegument protein| Length = 3421 Score = 30.0 bits (66), Expect = 6.1 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Frame = +2 Query: 329 RRPGRCMPSPPQIAPLTETPLREAS--RPMLLKPPRSPSSVSEQCVH*SPILQGSPACPA 502 R MP+PP+ P+ E+ + S R L P +P S+ S I+ G P Sbjct: 2476 RELSNAMPAPPKTTPVVESKQKSDSVDRAPTLPPKAAPLPPSDA----SAIMSGKPVFKY 2531 Query: 503 DPGSLHQEPVS 535 PG+ P S Sbjct: 2532 TPGNKSAVPPS 2542
>COLQ_HUMAN (Q9Y215) Acetylcholinesterase collagenic tail peptide precursor| (AChE Q subunit) (Acetylcholinesterase-associated collagen) Length = 456 Score = 30.0 bits (66), Expect = 6.1 Identities = 22/71 (30%), Positives = 29/71 (40%) Frame = +2 Query: 299 IPLLHQIQ*GRRPGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPIL 478 +P L Q + G C+ +PP PL P R LL P + + SP + Sbjct: 37 LPSLDQKKRGGHKACCLLTPPP-PPLFPPPFFRGGRSPLLSPDMKNLMLELETSQ-SPCM 94 Query: 479 QGSPACPADPG 511 QGS P PG Sbjct: 95 QGSLGSPGPPG 105
>CSKI1_HUMAN (Q8WXD9) Caskin-1 (CASK-interacting protein 1)| Length = 1431 Score = 30.0 bits (66), Expect = 6.1 Identities = 21/52 (40%), Positives = 22/52 (42%) Frame = +2 Query: 335 PGRCMPSPPQIAPLTETPLREASRPMLLKPPRSPSSVSEQCVH*SPILQGSP 490 P P P +A L P E KPP SP V Q V P LQGSP Sbjct: 1195 PPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPV---PKLQGSP 1243 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 87,950,914 Number of Sequences: 219361 Number of extensions: 1765743 Number of successful extensions: 5591 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4898 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5568 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
