ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal35f17 |
|---|---|
| Clone Library Name | barley_pub |
>TL30_ARATH (O49292) Thylakoid lumenal 29.8 kDa protein, chloroplast precursor| Length = 274 Score = 222 bits (565), Expect = 8e-58 Identities = 111/135 (82%), Positives = 118/135 (87%), Gaps = 1/135 (0%) Frame = -3 Query: 638 ETPVSIADLGGTEIDLRFGNPKEGRLSVIVAPTRRFADDL-DDATIEKIGTPEKVINAFG 462 E PVSIADLGGTEIDLRF +PKEGRLSVIVAP RFAD+L DD IE IG P KVINAFG Sbjct: 140 EVPVSIADLGGTEIDLRFASPKEGRLSVIVAPVLRFADNLGDDVKIENIGQPAKVINAFG 199 Query: 461 PEVIGENVEGKVLSTATAEYSGRTYYQFELEPPHIFITATAAGNRLYLFSVTANGLQWKR 282 PEVIGENVEGKVLS+ AE+ GR YYQFELEPPH+ ITATAAGNRLYLFSVT NGLQWKR Sbjct: 200 PEVIGENVEGKVLSSNVAEHDGRLYYQFELEPPHVLITATAAGNRLYLFSVTGNGLQWKR 259 Query: 281 HYKDLKQIAESFRVV 237 HYKDLK+IA SFR+V Sbjct: 260 HYKDLKRIASSFRIV 274
>TL19_ARATH (P82658) Thylakoid lumenal 19 kDa protein, chloroplast precursor| (P19) Length = 229 Score = 45.1 bits (105), Expect = 2e-04 Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 2/67 (2%) Frame = -3 Query: 431 KVLSTATAEYSGRTYYQFELEP--PHIFITATAAGNRLYLFSVTANGLQWKRHYKDLKQI 258 KV+S + +G+ YY +E++ H IT T + NRLY V A +W R + L + Sbjct: 160 KVVSEERKDETGQVYYLYEIDGVGKHSLITVTCSKNRLYAHFVNAPAPEWNRDHDTLTHL 219 Query: 257 AESFRVV 237 +SF+ V Sbjct: 220 RDSFKTV 226
>TL26_ARATH (P82538) Thylakoid lumenal 25.6 kDa protein, chloroplast precursor| Length = 230 Score = 41.2 bits (95), Expect = 0.003 Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 17/113 (15%) Frame = -3 Query: 527 DDLDDATIEKIGTPEKVINAFGP-EVIGENVEGKVLS----------TATAEYSGRTYYQ 381 + L+ ++ + T ++ I FGP + I E + KVL+ + + G+TYYQ Sbjct: 116 EPLESVSVNLVPTSKQTIKEFGPPKQIAETLIKKVLAPPNQKTTLIDASEHDVDGKTYYQ 175 Query: 380 FELEPP------HIFITATAAGNRLYLFSVTANGLQWKRHYKDLKQIAESFRV 240 FE H T T Y + AN +W++ L + +SF++ Sbjct: 176 FEFTVQARNYTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSFKI 228
>PSBP2_ARATH (O49344) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 36.2 bits (82), Expect = 0.084 Identities = 35/134 (26%), Positives = 53/134 (39%), Gaps = 26/134 (19%) Frame = -3 Query: 563 LSVIVAPTRRFADDLDDATIEKIGTPEKVIN---------AFGPEVIGEN-------VEG 432 +SV++ PT D +I G+PE+ ++ A+ E E Sbjct: 138 VSVMITPT-------DKKSITDYGSPEQFLSQVNYLLGKQAYVGETASEGGFDANAVATA 190 Query: 431 KVLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQW-KR 282 +L T+T E G+ YY + H ITAT G +LY+ A +W K Sbjct: 191 NILETSTQEIGGKEYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKG 250 Query: 281 HYKDLKQIAESFRV 240 K ++ A SF V Sbjct: 251 ARKFVENAATSFSV 264
>PSBP3_TOBAC (Q04127) Oxygen-evolving enhancer protein 2-3, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 266 Score = 35.0 bits (79), Expect = 0.19 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 25/140 (17%) Frame = -3 Query: 593 LRFGNPKEGRLSVIVAPTRRFADDLDDATIEKIGTPEKVINAFGPEVIGENVEGK----- 429 LRF + + +VIVA T D +I G+PE+ ++ + + GK Sbjct: 127 LRFEDNFDATSNVIVAIT-----PTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEG 181 Query: 428 -----------VLSTATAEYSGRTYYQFEL---------EPPHIFITATAAGNRLYLFSV 309 VL T+TAE G+ YY + H +TAT +LY+ Sbjct: 182 GFESDAVAIANVLETSTAEVGGKQYYYLSILTRTADGNEGGKHQLVTATVNDGKLYICKA 241 Query: 308 TANGLQWKRHYKDLKQIAES 249 A +W +K K+ E+ Sbjct: 242 QAGDKRW---FKGAKKFVEN 258
>PSBP_NARPS (Q40407) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 265 Score = 33.5 bits (75), Expect = 0.55 Identities = 31/130 (23%), Positives = 51/130 (39%), Gaps = 25/130 (19%) Frame = -3 Query: 563 LSVIVAPTRRFADDLDDATIEKIGTPEKVINA----------FGPEVIGENVE------G 432 + V+V PT D +I+ G+PE+ ++ FG + E Sbjct: 138 VGVMVNPT-------DKKSIKDYGSPEQFLSQVDYLLGKQAYFGKTISEGGFEPNAVRTA 190 Query: 431 KVLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQWKRH 279 +L T+T G+ YY + H+ ITAT + +LY+ A +W Sbjct: 191 NILETSTPVVGGKDYYSIHVLTRTADGDEGGKHLLITATVSDGKLYICKAQAGDKRW--- 247 Query: 278 YKDLKQIAES 249 +K K+ ES Sbjct: 248 FKGAKKFVES 257
>PSBP2_TOBAC (P18212) Oxygen-evolving enhancer protein 2-2, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane) Length = 265 Score = 33.5 bits (75), Expect = 0.55 Identities = 35/140 (25%), Positives = 55/140 (39%), Gaps = 25/140 (17%) Frame = -3 Query: 593 LRFGNPKEGRLSVIVAPTRRFADDLDDATIEKIGTPEKVINAFGPEVIGENVEGK----- 429 LRF + + +VIVA T D +I G+PE+ ++ + + GK Sbjct: 126 LRFEDNFDATSNVIVAIT-----PTDKKSITDFGSPEQFLSQVDYLLGRQAYSGKTDSEG 180 Query: 428 -----------VLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSV 309 VL T++AE G+ YY + H ITAT +LY+ Sbjct: 181 GFESDAVAIANVLETSSAEVGGKPYYYLSVLTRTADGNEGGKHQLITATVNDGKLYICKA 240 Query: 308 TANGLQWKRHYKDLKQIAES 249 A +W +K K+ E+ Sbjct: 241 QAGDKRW---FKGAKKFVEN 257
>PSBP1_ARATH (Q42029) Oxygen-evolving enhancer protein 2-1, chloroplast| precursor (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 263 Score = 33.5 bits (75), Expect = 0.55 Identities = 34/134 (25%), Positives = 53/134 (39%), Gaps = 26/134 (19%) Frame = -3 Query: 563 LSVIVAPTRRFADDLDDATIEKIGTPEKVIN---------AFGPEVIGEN-------VEG 432 L+V+V PT D +I G+PE+ ++ A+ E E Sbjct: 136 LNVMVTPT-------DKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATA 188 Query: 431 KVLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQW-KR 282 +L +++ E G+ YY + H ITAT G +LY+ A +W K Sbjct: 189 NILESSSQEVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKG 248 Query: 281 HYKDLKQIAESFRV 240 K ++ A SF V Sbjct: 249 ARKFVESAATSFSV 262
>PSBP_SINAL (P11594) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 260 Score = 32.3 bits (72), Expect = 1.2 Identities = 34/134 (25%), Positives = 52/134 (38%), Gaps = 26/134 (19%) Frame = -3 Query: 563 LSVIVAPTRRFADDLDDATIEKIGTPEKVIN---------AFGPEVIGEN-------VEG 432 L+V+V PT D +I G+PE+ ++ A+ E E Sbjct: 133 LNVMVTPT-------DKKSITDYGSPEEFLSQVNYLLGKQAYFGETASEGGFDNNAVATA 185 Query: 431 KVLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQW-KR 282 +L T + G+ YY + H ITAT G +LY+ A +W K Sbjct: 186 NILETNIQDVGGKPYYYLSVLTRTADGDEGGKHQLITATVNGGKLYICKAQAGDKRWFKG 245 Query: 281 HYKDLKQIAESFRV 240 K +++ A SF V Sbjct: 246 ANKFVEKAATSFSV 259
>ZG5_XENLA (P18725) Gastrula zinc finger protein 5-1 (XLCGF5.1)| Length = 445 Score = 31.2 bits (69), Expect = 2.7 Identities = 12/41 (29%), Positives = 19/41 (46%) Frame = +3 Query: 318 QVEPIPSSRSCDEDMGWFQLELVVSSSGVLCCGCGQNLPFH 440 Q + + ++ SC D G + SG +CC CG + H Sbjct: 157 QEKRVATNSSCQSDTGHVDCSVGSEPSGFICCKCGDSFAHH 197
>PSBP_BRAJU (Q96334) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (Fragment) Length = 217 Score = 31.2 bits (69), Expect = 2.7 Identities = 33/134 (24%), Positives = 52/134 (38%), Gaps = 26/134 (19%) Frame = -3 Query: 563 LSVIVAPTRRFADDLDDATIEKIGTPEKVINA----------FGPEVIGENVEGKVLSTA 414 L+V+V PT D +I G+PE+ ++ FG + ++TA Sbjct: 90 LNVMVTPT-------DKKSITDYGSPEEFLSQVNYLLGKQAYFGETACEGGFDNNAVATA 142 Query: 413 TA------EYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQW-KR 282 + G+ YY + H ITAT G +LY+ A +W K Sbjct: 143 NILETNIQDVGGKPYYYLSVLTRTADEDEGGKHQLITATVNGGKLYICKAQAGDKRWFKG 202 Query: 281 HYKDLKQIAESFRV 240 K +++ A SF V Sbjct: 203 ANKFVEKAATSFSV 216
>PSBP_WHEAT (Q00434) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) Length = 258 Score = 30.0 bits (66), Expect = 6.0 Identities = 33/133 (24%), Positives = 52/133 (39%), Gaps = 25/133 (18%) Frame = -3 Query: 563 LSVIVAPTRRFADDLDDATIEKIGTPEKVINAFGPEVIGENVEGK--------------- 429 LSVI+ PT + TI G+PE+ ++ G + ++ GK Sbjct: 132 LSVIINPTTK-------KTITDYGSPEEFLSQVGFLLGQQSYGGKTDSEGGFESDAVATA 184 Query: 428 -VLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQWKRH 279 VL ++ G+ YY + H ITAT A +LY+ + +K Sbjct: 185 NVLESSAPVVDGKQYYSITVLTRTADGDEGGKHQLITATVADGKLYVCKAQRDKRWFKGA 244 Query: 278 YKDLKQIAESFRV 240 K ++ A SF V Sbjct: 245 KKFVENAAGSFSV 257
>LIPB_PYRAE (Q8ZUR4) Probable lipoyltransferase (EC 2.3.1.-)| (Lipoyl-[acyl-carrier protein]-protein -N-lipoyltransferase) (Lipoate-protein ligase B) Length = 224 Score = 29.6 bits (65), Expect = 7.9 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 3/53 (5%) Frame = -3 Query: 638 ETPVSIADLGGTEIDLRFGNPKEGRLSVIVA---PTRRFADDLDDATIEKIGT 489 + PV + + GG D + P + + IVA P +R+ D ++DA I+ +GT Sbjct: 58 DVPVYLVERGG---DATYHGPGQAVVYPIVALRWPLKRYIDAIEDAVIKTLGT 107
>PUR5_VIBVY (Q7MIK1) Phosphoribosylformylglycinamidine cyclo-ligase (EC| 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) Length = 346 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Frame = -3 Query: 527 DDLDDATIEKIGTPEKVINAFGPEVIGENVEGKVLSTATA----EYSGRTYYQFELEPPH 360 +D+ D T +G + + GP G ++ K+L + A E +GRT + LEP Sbjct: 168 EDIIDGTKVAVGDALIAVGSSGPHSNGYSLVRKILEVSGADKNEELAGRTIGEHLLEPTK 227 Query: 359 IFI 351 I+I Sbjct: 228 IYI 230
>PUR5_VIBVU (Q8DBC2) Phosphoribosylformylglycinamidine cyclo-ligase (EC| 6.3.3.1) (AIRS) (Phosphoribosyl-aminoimidazole synthetase) (AIR synthase) Length = 346 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Frame = -3 Query: 527 DDLDDATIEKIGTPEKVINAFGPEVIGENVEGKVLSTATA----EYSGRTYYQFELEPPH 360 +D+ D T +G + + GP G ++ K+L + A E +GRT + LEP Sbjct: 168 EDIIDGTKVAVGDALIAVGSSGPHSNGYSLVRKILEVSGADKNEELAGRTIGEHLLEPTK 227 Query: 359 IFI 351 I+I Sbjct: 228 IYI 230
>PSBP_CUCSA (Q9SLQ8) Oxygen-evolving enhancer protein 2, chloroplast precursor| (OEE2) (23 kDa subunit of oxygen evolving system of photosystem II) (OEC 23 kDa subunit) (23 kDa thylakoid membrane protein) (OEC23) Length = 263 Score = 29.6 bits (65), Expect = 7.9 Identities = 32/137 (23%), Positives = 51/137 (37%), Gaps = 29/137 (21%) Frame = -3 Query: 563 LSVIVAPTRRFADDLDDATIEKIGTPEKVIN-------------------AFGPEVIGEN 441 LSVI+ PT D +I+ G+PE+ ++ F P+ + Sbjct: 136 LSVIINPT-------DKKSIKDFGSPEEFLSKVDYLLGKQAYFGKTASEGGFDPDAVAT- 187 Query: 440 VEGKVLSTATAEYSGRTYYQFELEP---------PHIFITATAAGNRLYLFSVTANGLQW 288 +L + +G+ YY + H ITAT +LY+ A +W Sbjct: 188 --ANILEATASNVNGKDYYFVSVLTRTADGDEGGKHQLITATVNDGKLYICKAQAGDKRW 245 Query: 287 -KRHYKDLKQIAESFRV 240 K K ++ A SF V Sbjct: 246 FKGARKFVEGAASSFSV 262 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 95,408,557 Number of Sequences: 219361 Number of extensions: 2033024 Number of successful extensions: 5465 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5318 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5461 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 5972710590 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
