ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal35f08 |
|---|---|
| Clone Library Name | barley_pub |
>SGAT_ARATH (Q56YA5) Serine--glyoxylate aminotransferase (EC 2.6.1.45)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Serine--pyruvate aminotransferase) (EC 2.6.1.51) Length = 401 Score = 151 bits (381), Expect = 1e-36 Identities = 71/90 (78%), Positives = 82/90 (91%) Frame = -3 Query: 538 VVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLK 359 +VPP+ID SEIV+ AW+RYNLSLGLGLNKVAGKVFRIGHLG++NELQLLGCL GVEM+LK Sbjct: 312 MVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGCLAGVEMILK 371 Query: 358 DIGYPVKLGSGVAAAAAYLSNSTPLIPSRI 269 D+GYPV +GSGVAAA+ YL + PLIPSRI Sbjct: 372 DVGYPVVMGSGVAAASTYLQHHIPLIPSRI 401
>SGAA_METEX (P55819) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 379 Score = 98.6 bits (244), Expect = 1e-20 Identities = 48/79 (60%), Positives = 62/79 (78%) Frame = -3 Query: 538 VVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLK 359 + P +D+++I+KHA+ RYNL+LG GL++VAGKVFRIGH+G LNEL LLG + G EM L Sbjct: 293 LAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIGHVGDLNELSLLGAIAGAEMSLI 352 Query: 358 DIGYPVKLGSGVAAAAAYL 302 D G V GSGVAAA++YL Sbjct: 353 DNGVKVTPGSGVAAASSYL 371
>SGAA_HYPME (O08374) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| Length = 404 Score = 95.1 bits (235), Expect = 1e-19 Identities = 50/82 (60%), Positives = 58/82 (70%) Frame = -3 Query: 538 VVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLK 359 +VP IDS+ I K A+ RYN S GLGLNKVAGKVFRIGHLG L+E+ + G L EM LK Sbjct: 307 LVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIGHLGMLDEVMIGGALFAAEMALK 366 Query: 358 DIGYPVKLGSGVAAAAAYLSNS 293 D G +KLGSG AAA Y S + Sbjct: 367 DNGVNLKLGSGTGAAAEYFSKN 388
>DHSS_ANACY (P16421) Soluble hydrogenase 42 kDa subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 383 Score = 59.7 bits (143), Expect = 5e-09 Identities = 29/82 (35%), Positives = 53/82 (64%), Gaps = 1/82 (1%) Frame = -3 Query: 538 VVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLK 359 V P +++ +I KR++++L G + ++ K+FR+GHLG +++ +L C+ +E+VL Sbjct: 302 VATPGMEADKIRSLMKKRFDIALAGGQDHLSNKIFRVGHLGFVSDRDILSCIASLEVVLL 361 Query: 358 DIGYP-VKLGSGVAAAAAYLSN 296 ++G+ G+GVAAAA SN Sbjct: 362 ELGHENFNSGAGVAAAARVFSN 383
>DHSS_SYNP1 (P14776) Soluble hydrogenase, small subunit (EC 1.12.-.-) (Tritium| exchange subunit) Length = 384 Score = 55.5 bits (132), Expect = 1e-07 Identities = 29/83 (34%), Positives = 50/83 (60%), Gaps = 1/83 (1%) Frame = -3 Query: 538 VVPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLK 359 V P +++ I KR++++L G + + G++FRIGHLG + + +L + +E VL Sbjct: 302 VAPQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIGHLGFVGDRDILAAVSALEAVLA 361 Query: 358 DIGYP-VKLGSGVAAAAAYLSNS 293 ++GY G+GVAAA+ LS + Sbjct: 362 ELGYTNFTPGAGVAAASRVLSTA 384
>Y959_METJA (Q58369) Putative aminotransferase MJ0959 (EC 2.6.1.-)| Length = 385 Score = 52.4 bits (124), Expect = 8e-07 Identities = 30/77 (38%), Positives = 44/77 (57%) Frame = -3 Query: 532 PPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGHLNELQLLGCLGGVEMVLKDI 353 P I+ S+ +YN+ + G +AGK+FRIGH+G E ++L L VE+ LK++ Sbjct: 307 PEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIGHMGICGEKEVLATLACVELALKEL 366 Query: 352 GYPVKLGSGVAAAAAYL 302 G+ VK SGV A L Sbjct: 367 GFEVK-ESGVEVAKEVL 382
>SGAT_MAIZE (P84187) Serine--glyoxylate aminotransferase (EC 2.6.1.45) (SGAT)| (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) (Fragments) Length = 136 Score = 40.0 bits (92), Expect = 0.004 Identities = 28/62 (45%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = -3 Query: 511 EIVKHAW---KRYNLSLGLGLNKVA-GKVFRIGHLGHLNELQLLGCLGGVEMVLKDIGYP 344 E+ AW RYNLSLGLGLNKVA GKVFR D+GYP Sbjct: 99 ELAVEAWGLSNRYNLSLGLGLNKVAGGKVFR------------------------DVGYP 134 Query: 343 VK 338 VK Sbjct: 135 VK 136
>LAS17_YEAST (Q12446) Proline-rich protein LAS17| Length = 633 Score = 32.7 bits (73), Expect = 0.67 Identities = 16/32 (50%), Positives = 17/32 (53%), Gaps = 1/32 (3%) Frame = +1 Query: 295 NSRGTPPRPPRRCQAS-PGTRCP*APSPPRRG 387 N+R PP PP R G R P P PPRRG Sbjct: 320 NNRPVPPPPPMRTTTEGSGVRLPAPPPPPRRG 351
>PUCG_BACSU (O32148) Purine catabolism protein pucG (EC 2.-.-.-)| Length = 416 Score = 32.7 bits (73), Expect = 0.67 Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = -3 Query: 535 VPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLGH-LNELQLLGCLGGVEMVLK 359 +P ID + ++ + + +AGK++RIG +G+ + +L L G+E VL Sbjct: 329 IPGGIDGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLL 388 Query: 358 DIGYPVKLGSGVAAAAAYLSNS 293 ++ G + AA N+ Sbjct: 389 RHNAGIEAGKALQAALDVYENA 410
>F100A_RAT (Q6AXN0) Protein FAM100A| Length = 176 Score = 31.6 bits (70), Expect = 1.5 Identities = 15/44 (34%), Positives = 20/44 (45%) Frame = +3 Query: 297 FERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWP 428 F R A+ + +G PM+ S S PP P + S P WP Sbjct: 81 FSRLKASESFHSGGSSGSPMATSATSPPPHFPHATGSFATPSWP 124
>POLN_RUBVT (P13889) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 31.6 bits (70), Expect = 1.5 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 295 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 393 ++RGTPP P R P P P+PPR G+P Sbjct: 740 DARGTPPPAPAR---DPPPPAPSPPAPPRAGDP 769
>YGHE_ECOLI (Q46833) Putative general secretion pathway protein L-type yghE| Length = 286 Score = 29.6 bits (65), Expect = 5.6 Identities = 17/53 (32%), Positives = 22/53 (41%) Frame = +3 Query: 273 LEGMRGVEFERYAAAAATPLPSFTGYPMSLSTISTPPRQPRSCSSLRWPRWPI 431 L G + ER A LP+ T Y + T P QPR +W RW + Sbjct: 87 LSAWAGADAERLTVTA---LPAITTYGEPEGNLLTGPWQPRVSYRKQWARWRV 136
>SPYA_CALJA (P31029) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 29.6 bits (65), Expect = 5.6 Identities = 15/40 (37%), Positives = 22/40 (55%) Frame = -3 Query: 535 VPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 416 VP D +IV + +R+ + + GL GKV RIG +G Sbjct: 348 VPTGYDWRDIVSYLIERFGIEITGGLGPSTGKVLRIGLMG 387
>UCN1_HUMAN (P55089) Urocortin precursor| Length = 124 Score = 29.3 bits (64), Expect = 7.4 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = -2 Query: 386 PRRGGDGAQGHRVPGEAWQRRGGRGGVPLEFHAPHPLQNLSKFHAQKQGGREEKNK 219 PRR G G G GE +R + L FH L L++ +Q++ R E+N+ Sbjct: 63 PRRAGPGRLGLGTAGERPRRDNPSLSIDLTFHLLRTLLELARTQSQRE--RAEQNR 116
>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related| protein) Length = 440 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +1 Query: 298 SRGTPPRPPRRCQASPGTRCP*APSPPRR 384 SRG PP PP R A P P P PP R Sbjct: 355 SRGKPPPPPSRTPAGP----PPPPPPPLR 379
>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related| protein) (WIP-and CR16-homologous protein) Length = 440 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +1 Query: 298 SRGTPPRPPRRCQASPGTRCP*APSPPRR 384 SRG PP PP R A P P P PP R Sbjct: 355 SRGKPPPPPSRTPAGP----PPPPPPPLR 379
>ADA15_RAT (Q9QYV0) ADAM 15 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 15) (Metalloproteinase-like, disintegrin-like, and cysteine-rich protein 15) (MDC-15) (Metalloprotease RGD disintegrin protein) (Metargidin) (CRII-7) Length = 816 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +1 Query: 313 PRPPRRCQASPGTR--CP*APSPPRRGNP 393 P PP+R Q PGT+ P P PPR+ P Sbjct: 748 PGPPQRAQQMPGTKPQGPTKPPPPRKPLP 776
>GRISA_PODAN (Q92258) GRISEA protein (MAC1 homolog)| Length = 597 Score = 28.9 bits (63), Expect = 9.6 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +1 Query: 298 SRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 393 S T P+PP R A+ AP+PP G+P Sbjct: 508 SHQTQPQPPPRPNANESDGSSNAPTPPNEGSP 539
>POLN_RUBVM (Q86500) Nonstructural polyprotein [Contains: Protease (EC| 3.4.22.-) (p150); RNA-directed RNA polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-) (p90)] Length = 2115 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = +1 Query: 295 NSRGTPPRPPRRCQASPGTRCP*APSPPRRGNP 393 ++RGTPP P R P P P+PPR G+P Sbjct: 741 DARGTPPPAPVRDPPRPQ---PSPPAPPRVGDP 770
>SPYA_FELCA (P41689) Serine--pyruvate aminotransferase, mitochondrial precursor| (EC 2.6.1.51) (SPT) (Alanine--glyoxylate aminotransferase) (EC 2.6.1.44) (AGT) Length = 414 Score = 28.9 bits (63), Expect = 9.6 Identities = 15/40 (37%), Positives = 21/40 (52%) Frame = -3 Query: 535 VPPYIDSSEIVKHAWKRYNLSLGLGLNKVAGKVFRIGHLG 416 VP D +IV + +++ + GL GKV RIG LG Sbjct: 348 VPAGYDWRDIVNYVMDHFDIEITGGLGPSMGKVLRIGLLG 387 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,379,571 Number of Sequences: 219361 Number of extensions: 1453868 Number of successful extensions: 5354 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4781 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5332 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
