ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8e24 |
|---|---|
| Clone Library Name | barley_pub |
>SCRL1_ORYSA (Q84TX2) SCAR-like protein 1| Length = 2097 Score = 112 bits (280), Expect = 1e-24 Identities = 67/113 (59%), Positives = 75/113 (66%) Frame = -3 Query: 716 RNPLVDAVAAHDRSTMRKVSELAPATDKPNTNDKNLWLEQIRNKVGELAPTADKPNTNDK 537 RNPLVDAVAAHDRSTMRKVSEL TDK KPN ++ Sbjct: 1996 RNPLVDAVAAHDRSTMRKVSELVAPTDK------------------------SKPN--ER 2029 Query: 536 NSWLEQIRNKTFDLKPVGSAQPTSMRAPARASSGNLRVAAIIEKANAIRQAVG 378 N LEQIRNKTF+LKPV SA+ ++R P RAS+ NL+VAAIIEKANAIRQAVG Sbjct: 2030 NLLLEQIRNKTFNLKPVSSAKQPTIRTPPRASTRNLKVAAIIEKANAIRQAVG 2082
>SCAR2_ARATH (Q5XPJ9) Protein SCAR2 (AtSCAR2) (Protein WAVE4) (Protein DISTORTED3)| (Protein IRREGULAR TRICHOME BRANCH1) Length = 1399 Score = 67.4 bits (163), Expect = 4e-11 Identities = 46/112 (41%), Positives = 59/112 (52%) Frame = -3 Query: 716 RNPLVDAVAAHDRSTMRKVSELAPATDKPNTNDKNLWLEQIRNKVGELAPTADKPNTNDK 537 R+PLVDAVAAHDR M+KVSE+ P K +DK Sbjct: 1303 RSPLVDAVAAHDRRKMKKVSEMV----HPPIKSKQ----------------------DDK 1336 Query: 536 NSWLEQIRNKTFDLKPVGSAQPTSMRAPARASSGNLRVAAIIEKANAIRQAV 381 +S L QIRNK+ +LKP + +P+ P +LRVAAI+EKAN IR A+ Sbjct: 1337 DSLLAQIRNKSVNLKPAVTTRPSIQTGPRT----DLRVAAILEKANTIRMAM 1384
>SCRL2_ORYSA (Q5QNA6) SCAR-like protein 2| Length = 1334 Score = 53.1 bits (126), Expect = 8e-07 Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 9/111 (8%) Frame = -3 Query: 686 HDRSTMRKVSELAPATDKPNTNDKNLWLEQIRNKVGEL---------APTADKPNTNDKN 534 H + RKV + ++ + + L+QIR+K G+ A D N +++ Sbjct: 1214 HAKENDRKVDGVKEISNPLDIEIRASLLQQIRDKSGQQKLNGHEKSKAVGNDTKNLDERE 1273 Query: 533 SWLEQIRNKTFDLKPVGSAQPTSMRAPARASSGNLRVAAIIEKANAIRQAV 381 L+QIR+KTF+L+ +A T+ +P A+S V AI+EKANAIRQAV Sbjct: 1274 ELLQQIRSKTFNLRRT-NASKTNTSSPTTANSS---VVAILEKANAIRQAV 1320
>SCAR4_ARATH (Q5XPJ6) Protein SCAR4 (AtSCAR4) (Protein WAVE3)| Length = 1170 Score = 43.9 bits (102), Expect = 5e-04 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 1/70 (1%) Frame = -3 Query: 587 KVGELAPTADKPNTNDKNSWLEQIRNKTFDLKPV-GSAQPTSMRAPARASSGNLRVAAII 411 KV E T ++ +S LE IR+K+F+L+P S +P A + NL+VAAI+ Sbjct: 1090 KVSEGNRTHVGARVDENDSLLEIIRSKSFNLRPADASGRPNFQVAVPKT---NLKVAAIL 1146 Query: 410 EKANAIRQAV 381 EKAN +RQA+ Sbjct: 1147 EKANTLRQAM 1156
>SCAR3_ARATH (Q9LP46) Protein SCAR3 (AtSCAR3) (Protein WAVE2)| Length = 1020 Score = 43.1 bits (100), Expect = 8e-04 Identities = 27/72 (37%), Positives = 43/72 (59%) Frame = -3 Query: 596 IRNKVGELAPTADKPNTNDKNSWLEQIRNKTFDLKPVGSAQPTSMRAPARASSGNLRVAA 417 ++N V E +A+ T + +L+QIR + F+L+PV +S A N +++A Sbjct: 937 LKNNVREEKQSANAKET-ETGDFLQQIRTQQFNLRPVVMTTTSSATATTDPII-NTKISA 994 Query: 416 IIEKANAIRQAV 381 I+EKAN+IRQAV Sbjct: 995 ILEKANSIRQAV 1006
>SCAR1_ARATH (Q6AWX6) Protein SCAR1 (AtSCAR1) (Protein WAVE1)| Length = 821 Score = 40.4 bits (93), Expect = 0.005 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = -3 Query: 596 IRNKVGELAPTADKPNTNDKNSWLEQIRNKTFDLKPVGSAQPTSMRAPARASSGNLRVAA 417 ++N V + + N + +L QIR K F+L+ V + +S ++ N ++ Sbjct: 738 LKNNVRDYKQSHGNTNETEAGDFLHQIRTKQFNLRRVVRTKTSSSE-----TTMNTNISV 792 Query: 416 IIEKANAIRQAV 381 I+EKAN+IRQAV Sbjct: 793 ILEKANSIRQAV 804
>UFC1_MOUSE (Q9CR09) Ufm1-conjugating enzyme 1 (Ubiquitin-fold| modifier-conjugating enzyme 1) Length = 167 Score = 32.0 bits (71), Expect = 1.9 Identities = 16/59 (27%), Positives = 26/59 (44%) Frame = -3 Query: 683 DRSTMRKVSELAPATDKPNTNDKNLWLEQIRNKVGELAPTADKPNTNDKNSWLEQIRNK 507 D +T R VSE+ D+ LW+++++ + L + N N N W NK Sbjct: 3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVEN-NKNSDNDWFRLESNK 60
>HUNB_DROPO (O46252) Protein hunchback (Fragments)| Length = 193 Score = 32.0 bits (71), Expect = 1.9 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 3/67 (4%) Frame = -3 Query: 572 APTADKPNTNDKNS--WLEQIRNKTFDLKPVGSA-QPTSMRAPARASSGNLRVAAIIEKA 402 A P+ ND+NS WL + N + P PT+ A A A++ VAAI +A Sbjct: 87 AAMTPSPSNNDQNSLGWLSGLPNPMQTIMPANMRPSPTATTATAAAAAPTTTVAAIALQA 146 Query: 401 NAIRQAV 381 N QA+ Sbjct: 147 NDKLQAL 153
>UFC1_RAT (Q6BBI8) Ufm1-conjugating enzyme 1 (Ubiquitin-fold| modifier-conjugating enzyme 1) Length = 167 Score = 31.2 bits (69), Expect = 3.3 Identities = 16/59 (27%), Positives = 26/59 (44%) Frame = -3 Query: 683 DRSTMRKVSELAPATDKPNTNDKNLWLEQIRNKVGELAPTADKPNTNDKNSWLEQIRNK 507 D +T R VSE+ D+ LW+++++ + L + N N N W NK Sbjct: 3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVEN-NKNADNDWFRLESNK 60
>UFC1_HUMAN (Q9Y3C8) Ufm1-conjugating enzyme 1 (Ubiquitin-fold| modifier-conjugating enzyme 1) Length = 167 Score = 31.2 bits (69), Expect = 3.3 Identities = 16/59 (27%), Positives = 26/59 (44%) Frame = -3 Query: 683 DRSTMRKVSELAPATDKPNTNDKNLWLEQIRNKVGELAPTADKPNTNDKNSWLEQIRNK 507 D +T R VSE+ D+ LW+++++ + L + N N N W NK Sbjct: 3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVEN-NKNADNDWFRLESNK 60
>UFC1_BOVIN (Q5E953) Ufm1-conjugating enzyme 1 (Ubiquitin-fold| modifier-conjugating enzyme 1) Length = 167 Score = 31.2 bits (69), Expect = 3.3 Identities = 16/59 (27%), Positives = 26/59 (44%) Frame = -3 Query: 683 DRSTMRKVSELAPATDKPNTNDKNLWLEQIRNKVGELAPTADKPNTNDKNSWLEQIRNK 507 D +T R VSE+ D+ LW+++++ + L + N N N W NK Sbjct: 3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVEN-NKNADNDWFRLESNK 60
>Y028_ARCFU (O30207) Hypothetical protein AF0028| Length = 371 Score = 30.4 bits (67), Expect = 5.7 Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 6/66 (9%) Frame = +1 Query: 502 KVLFLICSSHEFLSLVFGLSAVGASSPTL------FLICSSHKFLSLVFGLSVAGASSET 663 K + +CS ++ LV G A+G +L F++ S HK ++ + V G E Sbjct: 167 KKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEW 226 Query: 664 XRIVLR 681 IVLR Sbjct: 227 AEIVLR 232
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 30.0 bits (66), Expect = 7.4 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +1 Query: 226 TSQDHKMACMAVHPVQDLAGLAPFC 300 T +H++AC+ + P+ D GL+P C Sbjct: 532 TEMEHEVACLDITPLGDSNGLSPLC 556
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 30.0 bits (66), Expect = 7.4 Identities = 10/25 (40%), Positives = 17/25 (68%) Frame = +1 Query: 226 TSQDHKMACMAVHPVQDLAGLAPFC 300 T +H++AC+ + P+ D GL+P C Sbjct: 532 TEMEHEVACLDITPLGDSNGLSPLC 556
>RRMJ_RHILO (Q983F8) Ribosomal RNA large subunit methyltransferase J (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) Length = 265 Score = 29.6 bits (65), Expect = 9.7 Identities = 13/32 (40%), Positives = 17/32 (53%) Frame = +2 Query: 290 HLSAKTRTPGGQNSWCSMCRSNYRRLRHRFPP 385 H AKT G +N SM + N+R + H PP Sbjct: 182 HFLAKTFQGGAENELLSMLKKNFRSVHHVKPP 213
>HUNB_DRODA (O46262) Protein hunchback (Fragments)| Length = 195 Score = 29.6 bits (65), Expect = 9.7 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Frame = -3 Query: 572 APTADKPNTNDKNS--WLEQIRNKTFDLKPVGSA-QPTSMRAPARASSGNLRVAAIIEKA 402 A P+ ND+NS WL + N + P PT+ A A A++ AAI +A Sbjct: 89 AAMTPSPSNNDQNSLGWLVGLPNPMQTIMPANMRPSPTATTATAAAAAPTTTAAAIALQA 148 Query: 401 NAIRQAV 381 N QA+ Sbjct: 149 NDKLQAL 155 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 107,882,239 Number of Sequences: 219361 Number of extensions: 2379424 Number of successful extensions: 6651 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 6263 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6641 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7309604013 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
