ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal35e14 |
|---|---|
| Clone Library Name | barley_pub |
>DCE1_ARATH (Q42521) Glutamate decarboxylase 1 (EC 4.1.1.15) (GAD 1)| Length = 502 Score = 133 bits (334), Expect = 4e-31 Identities = 73/126 (57%), Positives = 83/126 (65%), Gaps = 9/126 (7%) Frame = -1 Query: 565 AFSLKDSSRHDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVID 386 AFSLKDSS H EFEIS+ RR+GWIVPAYTMPP+AQH+TVLRVV+REDFSRT AERLVID Sbjct: 377 AFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVID 436 Query: 385 IEKVLHELDALPSR-----SSGPSLQHPNGD----TVSEKDLARQXXXXXXXXXXXXXXX 233 IEKV+ ELD LPSR S G N D TV + D+ +Q Sbjct: 437 IEKVMRELDELPSRVIHKISLGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRK 496 Query: 232 KTQGVC 215 KT G+C Sbjct: 497 KTSGIC 502
>DCE2_ARATH (Q42472) Glutamate decarboxylase 2 (EC 4.1.1.15) (GAD 2)| Length = 494 Score = 128 bits (322), Expect = 1e-29 Identities = 65/96 (67%), Positives = 73/96 (76%) Frame = -1 Query: 565 AFSLKDSSRHDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVID 386 AFSLKD S H+EFEISE RRFGWIVPAYTMP DAQH+TVLRVV+REDFSRT AERLV D Sbjct: 376 AFSLKDHSFHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVAD 435 Query: 385 IEKVLHELDALPSRSSGPSLQHPNGDTVSEKDLARQ 278 I KVLHELD LPS+ S + V EK + ++ Sbjct: 436 ISKVLHELDTLPSKISKKMGIEGIAENVKEKKMEKE 471
>DCE_PETHY (Q07346) Glutamate decarboxylase (EC 4.1.1.15) (GAD)| Length = 500 Score = 128 bits (321), Expect = 1e-29 Identities = 61/74 (82%), Positives = 68/74 (91%) Frame = -1 Query: 565 AFSLKDSSRHDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVID 386 AFSLKD+ +H+EFEISE RRFGWIVPAYTMPP+AQH+TVLRVV+REDFSRT AERLV D Sbjct: 377 AFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRD 436 Query: 385 IEKVLHELDALPSR 344 IEKVLHELD LP+R Sbjct: 437 IEKVLHELDTLPAR 450
>DCE_LYCES (P54767) Glutamate decarboxylase (EC 4.1.1.15) (GAD) (ERT D1)| Length = 502 Score = 115 bits (288), Expect = 9e-26 Identities = 61/111 (54%), Positives = 75/111 (67%), Gaps = 16/111 (14%) Frame = -1 Query: 565 AFSLKDSSRHDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVID 386 AFSL+DSS++ FE+SE RRFGWIVPAYTMPPDA+H+ VLRVV+REDFS + AERLV D Sbjct: 378 AFSLRDSSKYTVFEVSEHLRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSD 437 Query: 385 IEKVLHELDALPSR---------------SSGPSLQHPNGDTV-SEKDLAR 281 IEK+L ELD P R G L H + DTV ++KD+ + Sbjct: 438 IEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIK 488
>DCEB_SHIFL (P69912) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta)| Length = 466 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = -1 Query: 562 FSLKDSSR--HDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVI 389 F LKD + +++SE R GW VPA+T+ +A + V+R++ R F FAE L+ Sbjct: 380 FKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLE 439 Query: 388 DIEKVLHELDALP 350 D + L L P Sbjct: 440 DYKASLKYLSDHP 452
>DCEB_ECOLI (P69910) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta)| Length = 466 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = -1 Query: 562 FSLKDSSR--HDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVI 389 F LKD + +++SE R GW VPA+T+ +A + V+R++ R F FAE L+ Sbjct: 380 FKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLE 439 Query: 388 DIEKVLHELDALP 350 D + L L P Sbjct: 440 DYKASLKYLSDHP 452
>DCEB_ECOL6 (Q8FHG5) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta)| Length = 466 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = -1 Query: 562 FSLKDSSR--HDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVI 389 F LKD + +++SE R GW VPA+T+ +A + V+R++ R F FAE L+ Sbjct: 380 FKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLE 439 Query: 388 DIEKVLHELDALP 350 D + L L P Sbjct: 440 DYKASLKYLSDHP 452
>DCEB_ECO57 (P69911) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta)| Length = 466 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = -1 Query: 562 FSLKDSSR--HDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVI 389 F LKD + +++SE R GW VPA+T+ +A + V+R++ R F FAE L+ Sbjct: 380 FKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLE 439 Query: 388 DIEKVLHELDALP 350 D + L L P Sbjct: 440 DYKASLKYLSDHP 452
>DCEA_SHIFL (Q83PR1) Glutamate decarboxylase alpha (EC 4.1.1.15) (GAD-alpha)| Length = 466 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = -1 Query: 562 FSLKDSSR--HDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVI 389 F LKD + +++SE R GW VPA+T+ +A + V+R++ R F FAE L+ Sbjct: 380 FKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLE 439 Query: 388 DIEKVLHELDALP 350 D + L L P Sbjct: 440 DYKASLKYLSDHP 452
>DCEA_ECOLI (P69908) Glutamate decarboxylase alpha (EC 4.1.1.15) (GAD-alpha)| Length = 466 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = -1 Query: 562 FSLKDSSR--HDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVI 389 F LKD + +++SE R GW VPA+T+ +A + V+R++ R F FAE L+ Sbjct: 380 FKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLE 439 Query: 388 DIEKVLHELDALP 350 D + L L P Sbjct: 440 DYKASLKYLSDHP 452
>DCEA_ECOL6 (P69909) Glutamate decarboxylase alpha (EC 4.1.1.15) (GAD-alpha)| Length = 466 Score = 45.1 bits (105), Expect = 1e-04 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = -1 Query: 562 FSLKDSSR--HDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVI 389 F LKD + +++SE R GW VPA+T+ +A + V+R++ R F FAE L+ Sbjct: 380 FKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLE 439 Query: 388 DIEKVLHELDALP 350 D + L L P Sbjct: 440 DYKASLKYLSDHP 452
>DCEA_ECO57 (P58228) Glutamate decarboxylase alpha (EC 4.1.1.15) (GAD-alpha)| Length = 466 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/60 (36%), Positives = 34/60 (56%) Frame = -1 Query: 529 FEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALP 350 +++SE R GW VPA+T+ +A + V+R++ R F FAE L+ D + L L P Sbjct: 393 YDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
>DCEB_LISIN (Q928R9) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta)| Length = 464 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/70 (27%), Positives = 38/70 (54%), Gaps = 2/70 (2%) Frame = -1 Query: 562 FSLKDSS--RHDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVI 389 + LKD + + +++++ + GW VPAY +P + +++ + R V R D AE + Sbjct: 376 YKLKDDANVKWTLYDLADRLQMRGWQVPAYPLPKNLENIIIQRYVCRADLGFNMAEEFIQ 435 Query: 388 DIEKVLHELD 359 D + + EL+ Sbjct: 436 DFQASIQELN 445
>DCE_YEAST (Q04792) Glutamate decarboxylase (EC 4.1.1.15) (GAD)| Length = 585 Score = 40.8 bits (94), Expect = 0.003 Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%) Frame = -1 Query: 523 ISEFXRRFGWIVPAYTMPP---DAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHEL 362 +S R GWI+P Y +P + VLRVV R + A+ L++DIE +L +L Sbjct: 465 LSSLLRGRGWIIPNYPLPKATDGSDEKEVLRVVFRSEMKLDLAQLLIVDIESILTKL 521
>DCE_LACLC (O30418) Glutamate decarboxylase (EC 4.1.1.15)| Length = 466 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 2/70 (2%) Frame = -1 Query: 562 FSLKDSSRH--DEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVI 389 + LK++S + +++++ GW VPAY +P + ++ + R+V+R DF A V Sbjct: 378 YKLKENSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQ 437 Query: 388 DIEKVLHELD 359 D+++ + L+ Sbjct: 438 DMQEAIDALN 447
>DCE_LACLA (Q9CG20) Glutamate decarboxylase (EC 4.1.1.15) (GAD)| Length = 466 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 2/70 (2%) Frame = -1 Query: 562 FSLKDSSRH--DEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVI 389 + LK+ S + +++++ GW VPAY +P + ++ + R+V+R DF A V Sbjct: 378 YKLKEDSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQ 437 Query: 388 DIEKVLHELD 359 D+++ + L+ Sbjct: 438 DMQEAIEALN 447
>DCEB_LISMO (Q9EYW9) Glutamate decarboxylase beta (EC 4.1.1.15) (GAD-beta)| Length = 464 Score = 40.0 bits (92), Expect = 0.005 Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 2/70 (2%) Frame = -1 Query: 562 FSLKDSSRHDE--FEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVI 389 + LKD + + +++++ + GW VPAY +P +++ + R V R D AE + Sbjct: 376 YKLKDDANVNWTLYDLADRLQMRGWQVPAYPLPKSLENIIIQRYVCRADLGFNMAEEFIQ 435 Query: 388 DIEKVLHELD 359 D + + EL+ Sbjct: 436 DFQASIQELN 445
>DCEC_LISIN (Q928K4) Probabl glutamate decarboxylase gamma (EC 4.1.1.15)| (GAD-gamma) Length = 467 Score = 39.7 bits (91), Expect = 0.006 Identities = 18/47 (38%), Positives = 21/47 (44%) Frame = -1 Query: 499 GWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELD 359 GW VPAY +P D + R V R D AE D LH L+ Sbjct: 402 GWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADALHNLE 448
>DCEC_LISMO (Q8Y4K4) Probabl glutamate decarboxylase gamma (EC 4.1.1.15)| (GAD-gamma) Length = 467 Score = 38.9 bits (89), Expect = 0.010 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = -1 Query: 499 GWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELD 359 GW VPAY +P D + R V R D AE D +H L+ Sbjct: 402 GWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADAIHNLE 448
>PFDB_SULAC (Q4JB32) Prefoldin beta subunit (GimC beta subunit)| Length = 125 Score = 33.5 bits (75), Expect = 0.43 Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 10/76 (13%) Frame = -1 Query: 475 MPPDAQHVTVLRVVVREDFSRTFAERLVID-----IEKVLHELDALPS-----RSSGPSL 326 +PP+ Q V ++E +R AER VID + KVL EL LPS + G L Sbjct: 5 LPPELQTELVKLQQLQEQLNRVIAERSVIDSQLREVNKVLDELKQLPSDTIIYKIVGNLL 64 Query: 325 QHPNGDTVSEKDLARQ 278 N D V EK+L Q Sbjct: 65 VKVNKDNV-EKELDDQ 79
>DCEA_LISMO (Q9F5P3) Glutamate decarboxylase alpha (EC 4.1.1.15) (GAD-alpha)| Length = 462 Score = 33.5 bits (75), Expect = 0.43 Identities = 14/57 (24%), Positives = 29/57 (50%) Frame = -1 Query: 529 FEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELD 359 +++++ + GW VPAY +P + + + R V R D + D+ + + EL+ Sbjct: 387 YDLADRLQMKGWQVPAYPLPKEMGNTIIQRYVCRGDLGQNMVTAFKNDLSESIEELN 443
>TRMD_MYCPA (Q73VN9) tRNA (guanine-N(1)-)-methyltransferase (EC 2.1.1.31)| (M1G-methyltransferase) (tRNA [GM37] methyltransferase) Length = 239 Score = 30.8 bits (68), Expect = 2.8 Identities = 20/72 (27%), Positives = 33/72 (45%) Frame = -1 Query: 547 SSRHDEFEISEFXRRFGWIVPAYTMPPDAQHVTVLRVVVREDFSRTFAERLVIDIEKVLH 368 +SRHD+ RR P+YT PP + + V V++ D +R A R + +++ Sbjct: 164 ASRHDDSHSPALDRRLEG--PSYTRPPSWRGLDVPEVLLSGDHARIAAWRREVSLQRTRE 221 Query: 367 ELDALPSRSSGP 332 L + GP Sbjct: 222 RRPELLADPVGP 233
>BLNK_HUMAN (Q8WV28) B-cell linker protein (Cytoplasmic adapter protein)| (B-cell adapter containing SH2 domain protein) (B-cell adapter containing Src homology 2 domain protein) (Src homology 2 domain-containing leukocyte protein of 65 kDa) (SLP-65) Length = 456 Score = 30.0 bits (66), Expect = 4.7 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 75 GSNNGARRTINPAP*KPSRTREA*HKIITEIKSSRTAGEVNRLSSAQQTP 224 G N+GA T +P P PS A K T +K++ A + N S ++ P Sbjct: 226 GRNSGAWETKSPPPAAPSPLPRAGKKPTTPLKTTPVASQQNASSVCEEKP 275
>NIFM_AZOVI (P14890) Protein nifM| Length = 292 Score = 29.6 bits (65), Expect = 6.1 Identities = 17/59 (28%), Positives = 25/59 (42%) Frame = -1 Query: 463 AQHVTVLRVVVREDFSRTFAERLVIDIEKVLHELDALPSRSSGPSLQHPNGDTVSEKDL 287 AQH + V + EDF E IE +L L P R + +++H T + L Sbjct: 143 AQHKAHILVTINEDFPENTREAARTRIETILKRLRGKPERFAEQAMKHSECPTAMQGGL 201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,039,493 Number of Sequences: 219361 Number of extensions: 733497 Number of successful extensions: 1615 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 1610 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1614 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4643056080 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
