ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34p02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 44 0.49
2emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4,... 44 0.49
3emb|AJ271819.2|AVA271819 Anabaena variabilis petC gene for Riesk... 44 0.49
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
5dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
7dbj|AP007254.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
8dbj|AP006584.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
9dbj|AP006525.2| Oryza sativa (japonica cultivar-group) genomic D... 44 0.49
10ref|XM_595621.2| PREDICTED: Bos taurus similar to NEW1 domain co... 42 1.9
11gb|AC122405.4| Mus musculus BAC clone RP24-119O6 from chromosome... 42 1.9
12ref|XM_759369.1| Theileria parva strain Muguga chromosome 4 hypo... 42 1.9
13ref|XM_849878.1| PREDICTED: Canis familiaris similar to NEW1 dom... 42 1.9
14gb|AC150786.21| Medicago truncatula clone mth2-170o9, complete s... 42 1.9
15emb|AL356269.10| Human DNA sequence from clone RP11-420J12 on ch... 42 1.9
16gb|AC113352.2| Homo sapiens chromosome 5 clone CTD-2613O8, compl... 42 1.9
17gb|AC079414.6| Homo sapiens chromosome 16 clone RP11-358L22, com... 42 1.9
18gb|AC009044.3|AC009044 Homo sapiens chromosome 16 clone RP11-190... 42 1.9
19dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
20emb|AL929452.9| Mouse DNA sequence from clone RP23-345L15 on chr... 42 1.9
21gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.7
22gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic ... 40 7.7
23emb|CT010515.8| M.truncatula DNA sequence from clone MTH2-146B21... 40 7.7
24gb|AC148347.13| Medicago truncatula clone mth2-26g24, complete s... 40 7.7
25gb|AC153125.10| Medicago truncatula clone mth2-74f16, complete s... 40 7.7
26gb|AC148291.22| Medicago truncatula clone mth2-14n3, complete se... 40 7.7
27gb|AC140550.31| Medicago truncatula clone mth2-54a24, complete s... 40 7.7
28gb|AC150205.5| Medicago truncatula clone mth2-72l17, complete se... 40 7.7
29gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete se... 40 7.7
30emb|AL121827.34|HSA261N11 Human DNA sequence from clone RP11-261... 40 7.7
31gb|DQ093071.1| Homo sapiens cholinergic receptor, nicotinic, alp... 40 7.7
32gb|AC151673.24| Medicago truncatula clone mth2-2k12, complete se... 40 7.7
33gb|AC148525.14| Medicago truncatula clone mth2-24i13, complete s... 40 7.7
34gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3... 40 7.7
35gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genom... 40 7.7
36gb|U60235.1|ABU60235 Agaricus bitorquis ATP synthase subunit 6 g... 40 7.7
37gb|AF096924.1|AF096924 Agaricus campestris isolate RWKLM4 ATP sy... 40 7.7
38gb|AF096914.1|AF096914 Leucoagaricus sp. RWK1728 isolate RWK1728... 40 7.7
39dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
40dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
41dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
42gb|AC009499.4| Homo sapiens BAC clone RP11-510D10 from 2, comple... 40 7.7
43gb|AC073066.5| Homo sapiens BAC clone RP11-149P12 from 2, comple... 40 7.7
44dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
45dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
46dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
47dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
48dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
49emb|CT030245.8| M.truncatula DNA sequence from clone MTH2-59B18 ... 40 7.7
50gb|U51244.1|U51244 Homo sapiens BAC clone 1D9 from 2p21, complet... 40 7.7
51emb|CR956402.15| M.truncatula DNA sequence from clone MTH2-50J5 ... 40 7.7 
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 35     aagtttcacagtcaaatatgaa 56
              ||||||||||||||||||||||
Sbjct: 498820 aagtttcacagtcaaatatgaa 498799
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>emb|AL606607.3|OSJN00068 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0065L13,
             complete sequence
          Length = 103039

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 211   gtaatactccctttatttcaaaatac 236
             ||||||||||||| ||||||||||||
Sbjct: 58729 gtaatactcccttcatttcaaaatac 58754
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>emb|AJ271819.2|AVA271819 Anabaena variabilis petC gene for Rieske FeS-protein and petA gene
            for cytochrome f
          Length = 4412

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 35   aagtttcacagtcaaatatgaa 56
            ||||||||||||||||||||||
Sbjct: 3517 aagtttcacagtcaaatatgaa 3538
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                          
Query: 211      gtaatactccctttatttcaaaatac 236
                ||||||||||||| ||||||||||||
Sbjct: 25481236 gtaatactcccttcatttcaaaatac 25481261
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 214      atactccctttatttcaaaata 235
                ||||||||||||||||||||||
Sbjct: 19962474 atactccctttatttcaaaata 19962453



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 541     gagcagcatatgaacatgata 561
               |||||||||||||||||||||
Sbjct: 1091177 gagcagcatatgaacatgata 1091157



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 213     aatactccctttatttcaaaatac 236
               |||||||||| |||||||||||||
Sbjct: 8588879 aatactccctctatttcaaaatac 8588902
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 277      cgacaagtattttagaacggat 298
                ||||||||||||||||||||||
Sbjct: 10411200 cgacaagtattttagaacggat 10411221
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>dbj|AP007254.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9,
             fosmid clone:OSJNOa211K08
          Length = 41043

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 214   atactccctttatttcaaaata 235
             ||||||||||||||||||||||
Sbjct: 19113 atactccctttatttcaaaata 19092
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>dbj|AP006584.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1197G05
          Length = 130823

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 277    cgacaagtattttagaacggat 298
              ||||||||||||||||||||||
Sbjct: 118737 cgacaagtattttagaacggat 118758
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>dbj|AP006525.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0498F03
          Length = 54025

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 214   atactccctttatttcaaaata 235
             ||||||||||||||||||||||
Sbjct: 36622 atactccctttatttcaaaata 36601
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>ref|XM_595621.2| PREDICTED: Bos taurus similar to NEW1 domain containing protein
           isoform 2 (LOC517451), mRNA
          Length = 2143

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 27  caatatttaagtttcacagtc 47
           |||||||||||||||||||||
Sbjct: 344 caatatttaagtttcacagtc 324
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>gb|AC122405.4| Mus musculus BAC clone RP24-119O6 from chromosome 12, complete sequence
          Length = 196285

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 246    taccatgacaagtatttttgt 266
              |||||||||||||||||||||
Sbjct: 149294 taccatgacaagtatttttgt 149314
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>ref|XM_759369.1| Theileria parva strain Muguga chromosome 4 hypothetical protein
            (TP04_0825) partial mRNA
          Length = 3177

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 169  tgtaatgataaaccttttgag 189
            |||||||||||||||||||||
Sbjct: 1384 tgtaatgataaaccttttgag 1404
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>ref|XM_849878.1| PREDICTED: Canis familiaris similar to NEW1 domain containing
           protein isoform 1 (LOC612148), mRNA
          Length = 1263

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 27  caatatttaagtttcacagtc 47
           |||||||||||||||||||||
Sbjct: 296 caatatttaagtttcacagtc 276
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>gb|AC150786.21| Medicago truncatula clone mth2-170o9, complete sequence
          Length = 142649

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 212    taatactccctttatttcaaaatac 236
              |||||||||||| ||||||||||||
Sbjct: 134738 taatactcccttcatttcaaaatac 134714
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>emb|AL356269.10| Human DNA sequence from clone RP11-420J12 on chromosome 13, complete
             sequence
          Length = 141895

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 483   cctctctccctgttgttttccctcc 507
             |||||||||||||||||||| ||||
Sbjct: 38986 cctctctccctgttgttttctctcc 39010
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>gb|AC113352.2| Homo sapiens chromosome 5 clone CTD-2613O8, complete sequence
          Length = 133668

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     aaaataatttagtacaacata 24
             |||||||||||||||||||||
Sbjct: 65694 aaaataatttagtacaacata 65674
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>gb|AC079414.6| Homo sapiens chromosome 16 clone RP11-358L22, complete sequence
          Length = 167015

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 151   gtgtaatagtagcttgcttgtaatg 175
             |||||||||||||||||| ||||||
Sbjct: 50535 gtgtaatagtagcttgctggtaatg 50511
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>gb|AC009044.3|AC009044 Homo sapiens chromosome 16 clone RP11-190D6, complete sequence
          Length = 167195

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 151    gtgtaatagtagcttgcttgtaatg 175
              |||||||||||||||||| ||||||
Sbjct: 132425 gtgtaatagtagcttgctggtaatg 132401
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>dbj|AP005860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OJ1134_E08
          Length = 153002

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 541    gagcagcatatgaacatgata 561
              |||||||||||||||||||||
Sbjct: 128870 gagcagcatatgaacatgata 128850
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>emb|AL929452.9| Mouse DNA sequence from clone RP23-345L15 on chromosome X, complete
             sequence
          Length = 221920

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 101   agagagccctagaagatatat 121
             |||||||||||||||||||||
Sbjct: 53724 agagagccctagaagatatat 53744
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 212      taatactccctttatttcaaaatacttg 239
                ||||||||||||| ||||||| ||||||
Sbjct: 33396684 taatactccctttgtttcaaattacttg 33396657



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 213      aatactccctttatttcaaaatac 236
                |||||||||| |||||||||||||
Sbjct: 21304808 aatactccctctatttcaaaatac 21304831
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>gb|AC133333.5| Oryza sativa chromosome 3 BAC OJ1785_A05 genomic sequence, complete
              sequence
          Length = 174910

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 213    aatactccctttatttcaaaatac 236
              |||||||||| |||||||||||||
Sbjct: 160723 aatactccctctatttcaaaatac 160746
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>emb|CT010515.8| M.truncatula DNA sequence from clone MTH2-146B21 on chromosome 3,
              complete sequence
          Length = 130617

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    gttgggaagaggctgctgca 412
              ||||||||||||||||||||
Sbjct: 125675 gttgggaagaggctgctgca 125656
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>gb|AC148347.13| Medicago truncatula clone mth2-26g24, complete sequence
          Length = 114712

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 393    gttgggaagaggctgctgca 412
              ||||||||||||||||||||
Sbjct: 107091 gttgggaagaggctgctgca 107110



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 393    gttgggaagaggctgctgca 412
              ||||||||||||||||||||
Sbjct: 101976 gttgggaagaggctgctgca 101995



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 393    gttgggaagaggctgctgca 412
              ||||||||||||||||||||
Sbjct: 101881 gttgggaagaggctgctgca 101900
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>gb|AC153125.10| Medicago truncatula clone mth2-74f16, complete sequence
          Length = 128458

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gttgggaagaggctgctgca 412
             ||||||||||||||||||||
Sbjct: 82261 gttgggaagaggctgctgca 82242
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>gb|AC148291.22| Medicago truncatula clone mth2-14n3, complete sequence
          Length = 138853

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 393  gttgggaagaggctgctgca 412
            ||||||||||||||||||||
Sbjct: 1963 gttgggaagaggctgctgca 1982
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>gb|AC140550.31| Medicago truncatula clone mth2-54a24, complete sequence
          Length = 129388

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 303    agtactaatactaattggagtgct 326
              |||||||||||||||| |||||||
Sbjct: 129022 agtactaatactaattagagtgct 129045
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>gb|AC150205.5| Medicago truncatula clone mth2-72l17, complete sequence
          Length = 130555

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gttgggaagaggctgctgca 412
             ||||||||||||||||||||
Sbjct: 18616 gttgggaagaggctgctgca 18597
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>gb|AC127019.29| Medicago truncatula clone mth2-31b1, complete sequence
          Length = 122810

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gttgggaagaggctgctgca 412
             ||||||||||||||||||||
Sbjct: 30538 gttgggaagaggctgctgca 30519



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gttgggaagaggctgctgca 412
             ||||||||||||||||||||
Sbjct: 25423 gttgggaagaggctgctgca 25404
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>emb|AL121827.34|HSA261N11 Human DNA sequence from clone RP11-261N11 on chromosome 20, complete
              sequence
          Length = 184223

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 394    ttgggaagaggctgctgcag 413
              ||||||||||||||||||||
Sbjct: 118997 ttgggaagaggctgctgcag 119016
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>gb|DQ093071.1| Homo sapiens cholinergic receptor, nicotinic, alpha polypeptide 4
             (CHRNA4) gene, complete cds
          Length = 20632

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 394   ttgggaagaggctgctgcag 413
             ||||||||||||||||||||
Sbjct: 13865 ttgggaagaggctgctgcag 13846
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>gb|AC151673.24| Medicago truncatula clone mth2-2k12, complete sequence
          Length = 125859

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gttgggaagaggctgctgca 412
             ||||||||||||||||||||
Sbjct: 50520 gttgggaagaggctgctgca 50501
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>gb|AC148525.14| Medicago truncatula clone mth2-24i13, complete sequence
          Length = 94953

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gttgggaagaggctgctgca 412
             ||||||||||||||||||||
Sbjct: 64844 gttgggaagaggctgctgca 64825



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gttgggaagaggctgctgca 412
             ||||||||||||||||||||
Sbjct: 64749 gttgggaagaggctgctgca 64730



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gttgggaagaggctgctgca 412
             ||||||||||||||||||||
Sbjct: 59634 gttgggaagaggctgctgca 59615
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>gb|AF083031.2|AF083031 Guillardia theta nucleomorph chromosome 3, complete sequence
          Length = 174133

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 164   ttgcttgtaatgataaacct 183
             ||||||||||||||||||||
Sbjct: 28252 ttgcttgtaatgataaacct 28271
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>gb|AC135958.2| Oryza sativa chromosome 3 BAC OSJNBa0059E14 genomic sequence, complete
              sequence
          Length = 154555

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 212    taatactccctttatttcaaaatacttg 239
              ||||||||||||| ||||||| ||||||
Sbjct: 101427 taatactccctttgtttcaaattacttg 101454
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>gb|U60235.1|ABU60235 Agaricus bitorquis ATP synthase subunit 6 gene, mitochondrial gene
           encoding mitochondrial protein, complete cds
          Length = 987

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  atgaatatggtacattagat 71
           ||||||||||||||||||||
Sbjct: 343 atgaatatggtacattagat 324
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>gb|AF096924.1|AF096924 Agaricus campestris isolate RWKLM4 ATP synthase subunit 6 gene,
           partial cds; mitochondrial gene for mitochondrial
           product
          Length = 465

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  atgaatatggtacattagat 71
           ||||||||||||||||||||
Sbjct: 223 atgaatatggtacattagat 204
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>gb|AF096914.1|AF096914 Leucoagaricus sp. RWK1728 isolate RWK1728 ATP synthase subunit 6
           gene, partial cds; mitochondrial gene for mitochondrial
           product
          Length = 579

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 52  atgaatatggtacattagat 71
           ||||||||||||||||||||
Sbjct: 263 atgaatatggtacattagat 244
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 212      taatactccctttatttcaaaatacttg 239
                ||||||||||||| ||||||| ||||||
Sbjct: 33487194 taatactccctttgtttcaaattacttg 33487167



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 213      aatactccctttatttcaaaatac 236
                |||||||||| |||||||||||||
Sbjct: 21297837 aatactccctctatttcaaaatac 21297860
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 276     acgacaagtattttagaacggata 299
               |||||||||||||||| |||||||
Sbjct: 7500052 acgacaagtattttaggacggata 7500029
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 212      taatactccctttatttcaaaata 235
                ||||||||||| ||||||||||||
Sbjct: 29441113 taatactccctctatttcaaaata 29441090
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>gb|AC009499.4| Homo sapiens BAC clone RP11-510D10 from 2, complete sequence
          Length = 176570

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 175   gataaaccttttgagactcc 194
             ||||||||||||||||||||
Sbjct: 63381 gataaaccttttgagactcc 63400
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>gb|AC073066.5| Homo sapiens BAC clone RP11-149P12 from 2, complete sequence
          Length = 169286

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 361    gtatttcatacataaaccaa 380
              ||||||||||||||||||||
Sbjct: 140817 gtatttcatacataaaccaa 140836
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>dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0510F09
          Length = 138277

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 212    taatactccctttatttcaaaata 235
              ||||||||||| ||||||||||||
Sbjct: 136175 taatactccctctatttcaaaata 136152
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>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0456F08
          Length = 156850

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 212  taatactccctttatttcaaaata 235
            ||||||||||| ||||||||||||
Sbjct: 7387 taatactccctctatttcaaaata 7364
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>dbj|AP005782.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
              clone:OSJNBb0079G12
          Length = 139796

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 213    aatactccctttatttcaaaatac 236
              |||||||||| |||||||||||||
Sbjct: 110089 aatactccctctatttcaaaatac 110112
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>dbj|AP005802.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0057D11
          Length = 190790

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 213   aatactccctttatttcaaaatac 236
             |||||||||| |||||||||||||
Sbjct: 18675 aatactccctctatttcaaaatac 18698
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>dbj|AP004070.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1705_E12
          Length = 191416

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 276   acgacaagtattttagaacggata 299
             |||||||||||||||| |||||||
Sbjct: 93758 acgacaagtattttaggacggata 93735
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>emb|CT030245.8| M.truncatula DNA sequence from clone MTH2-59B18 on chromosome 3, complete
              sequence
          Length = 128436

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    gttgggaagaggctgctgca 412
              ||||||||||||||||||||
Sbjct: 119600 gttgggaagaggctgctgca 119581



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    gttgggaagaggctgctgca 412
              ||||||||||||||||||||
Sbjct: 114485 gttgggaagaggctgctgca 114466



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gttgggaagaggctgctgca 412
             ||||||||||||||||||||
Sbjct: 32842 gttgggaagaggctgctgca 32823



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gttgggaagaggctgctgca 412
             ||||||||||||||||||||
Sbjct: 27729 gttgggaagaggctgctgca 27710
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>gb|U51244.1|U51244 Homo sapiens BAC clone 1D9 from 2p21, complete sequence
          Length = 67571

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 532   catggcagggagcagcatat 551
             ||||||||||||||||||||
Sbjct: 65249 catggcagggagcagcatat 65268
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>emb|CR956402.15| M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete
              sequence
          Length = 142361

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 393    gttgggaagaggctgctgca 412
              ||||||||||||||||||||
Sbjct: 103741 gttgggaagaggctgctgca 103722



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   gttgggaagaggctgctgca 412
             ||||||||||||||||||||
Sbjct: 98607 gttgggaagaggctgctgca 98588


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,609,979
Number of Sequences: 3902068
Number of extensions: 5609979
Number of successful extensions: 101480
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100908
Number of HSP's gapped (non-prelim): 572
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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