ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal35e09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ANTR2_HUMAN (P58335) Anthrax toxin receptor 2 precursor (Capilla... 29 3.7
2UBQL3_MOUSE (Q8C5U9) Ubiquilin-3 28 4.9
3TNFA_SPAAU (Q8JFG3) Tumor necrosis factor (TNF-alpha) 28 6.4
4NMNA3_HUMAN (Q96T66) Nicotinamide mononucleotide adenylyltransfe... 28 8.3
5VG51_SHV21 (Q01036) Gene 51 glycoprotein 28 8.3
6STHY_ARATH (Q9SYM2) Putative salt tolerance-like protein At1g78600 28 8.3

>ANTR2_HUMAN (P58335) Anthrax toxin receptor 2 precursor (Capillary|
           morphogenesis gene 2 protein) (CMG-2)
          Length = 489

 Score = 28.9 bits (63), Expect = 3.7
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
 Frame = +2

Query: 11  ILQVQPPSEAMGESTRTKFHHRNFKITTR----FCTATYSSTLCTSSAP 145
           IL++QP S  +GE  +     R F + +R     CT T + T  TS  P
Sbjct: 221 ILELQPSSVCVGEEFQIVLSGRGFMLGSRNGSVLCTYTVNETYTTSVKP 269



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>UBQL3_MOUSE (Q8C5U9) Ubiquilin-3|
          Length = 658

 Score = 28.5 bits (62), Expect = 4.9
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +2

Query: 98  FCTATYSSTLCTSSAP-QNNNSDHLKPPWS 184
           F TAT +ST  TSS P +  N D L  PW+
Sbjct: 278 FVTATTASTTTTSSQPSRTENCDPLPNPWT 307



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>TNFA_SPAAU (Q8JFG3) Tumor necrosis factor (TNF-alpha)|
          Length = 253

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 42  WANPQGQSFTTGTLRL-QHVFALPPTPPHFVHPQ 140
           W N QGQ+F  G  RL  +   +P T  +FV+ Q
Sbjct: 116 WKNGQGQAFAQGGFRLVDNKIVIPHTGLYFVYSQ 149



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>NMNA3_HUMAN (Q96T66) Nicotinamide mononucleotide adenylyltransferase 3 (EC|
           2.7.7.1) (NMN adenylyltransferase 3)
          Length = 252

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 14/46 (30%), Positives = 19/46 (41%)
 Frame = +3

Query: 27  LRRKPWANPQGQSFTTGTLRLQHVFALPPTPPHFVHPQHPKIIIQT 164
           +R  PW + Q Q   T  +   H   L  +PP    P H K +  T
Sbjct: 78  IRVDPWESEQAQWMETVKVLRHHHSKLLRSPPQMEGPDHGKALFST 123



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>VG51_SHV21 (Q01036) Gene 51 glycoprotein|
          Length = 269

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = +2

Query: 17  QVQPPSEAMGESTRTKFHHRNFKITTRFCTATYSSTLCTSSAPQNNNS 160
           ++ P S++  +ST+T         T++  T+  S+ + TS  P +NN+
Sbjct: 116 KLTPKSQSSSQSTKTTKQASKNLTTSKLATSFSSTYMTTSDQPYSNNT 163



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>STHY_ARATH (Q9SYM2) Putative salt tolerance-like protein At1g78600|
          Length = 299

 Score = 27.7 bits (60), Expect = 8.3
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +2

Query: 2   AWVILQVQPPSEAMGESTRTKFHHRNFKITTRFCTATYSSTLCTSSAP 145
           +W + Q+Q P  A G +    FHH +      F     SST  T S+P
Sbjct: 246 SWAVPQIQSPPTASGLNWPKHFHHHSV-----FVPDITSSTPYTGSSP 288


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,565,134
Number of Sequences: 219361
Number of extensions: 638458
Number of successful extensions: 2014
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2014
length of database: 80,573,946
effective HSP length: 53
effective length of database: 68,947,813
effective search space used: 1654747512
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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