ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal34o14 |
|---|---|
| Clone Library Name | barley_pub |
>ISAP1_ORYSA (Q9LLX1) Multiple stress-responsive zinc-finger protein ISAP1| (Stress-associated protein 1) (OsISAP1) Length = 164 Score = 95.5 bits (236), Expect = 1e-19 Identities = 39/57 (68%), Positives = 48/57 (84%) Frame = -1 Query: 536 CSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKL 366 CS CRKRVGLTGF CRCG+L+C HRYSD+H C +DY++AA DAIA+ NPVV+A K+ Sbjct: 105 CSRCRKRVGLTGFRCRCGHLFCGEHRYSDRHGCSYDYKSAARDAIARDNPVVRAAKI 161
>ZF2N1_ARATH (Q6NNI8) Zinc finger A20 and AN1 domains-containing protein| At1g12440 Length = 168 Score = 95.1 bits (235), Expect = 2e-19 Identities = 37/60 (61%), Positives = 50/60 (83%) Frame = -1 Query: 536 CSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 357 C +C K+VG+TGF CRCG+ +C THRY + HEC+FD++ A +AIAKANPVVKA+K+D+I Sbjct: 109 CLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAREAIAKANPVVKADKVDRI 168
>Z20D2_MOUSE (O88878) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 92.8 bits (229), Expect = 8e-19 Identities = 39/60 (65%), Positives = 46/60 (76%) Frame = -1 Query: 536 CSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 357 C CRK+VGLTGF+CRCGNL+C HRYSDKH C +DY+A A I K NPVV AEK+ +I Sbjct: 154 CFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>Z20D2_HUMAN (O76080) Zinc finger A20 domain-containing protein 2 (Zinc finger| protein 216) Length = 213 Score = 92.8 bits (229), Expect = 8e-19 Identities = 39/60 (65%), Positives = 46/60 (76%) Frame = -1 Query: 536 CSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 357 C CRK+VGLTGF+CRCGNL+C HRYSDKH C +DY+A A I K NPVV AEK+ +I Sbjct: 154 CFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAAAKIRKENPVVVAEKIQRI 213
>ZF2N3_ARATH (Q9SZ69) Zinc finger A20 and AN1 domains-containing protein| At4g12040 Length = 175 Score = 87.8 bits (216), Expect = 2e-17 Identities = 33/60 (55%), Positives = 47/60 (78%) Frame = -1 Query: 536 CSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 357 C +C K+VG+ GF C+CG+ +C +HRY +KHEC FD++ DAIAKANP+VKA+K+ +I Sbjct: 116 CFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQRI 175
>ZF2N2_ARATH (Q9SJM6) Zinc finger A20 and AN1 domains-containing protein| At2g36320 Length = 161 Score = 86.3 bits (212), Expect = 7e-17 Identities = 36/60 (60%), Positives = 45/60 (75%) Frame = -1 Query: 536 CSTCRKRVGLTGFNCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI 357 C+ CRKRVGLTGF CRCG +C +HRY + H C FD+++A + IAKANP+V A KL KI Sbjct: 102 CTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQKI 161
>ZFAN3_RAT (Q5U2M7) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Frame = -1 Query: 536 CSTCRKRVGLTGF---NCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKL 366 C C+ ++ L +CRCG ++C HR ++H+C FD+ + ++K KL Sbjct: 157 CFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR-----GREEAIMKMVKL 211 Query: 365 DKI*ERVGKT 336 D+ +VG++ Sbjct: 212 DR---KVGRS 218
>ZFAN3_MOUSE (Q497H0) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Frame = -1 Query: 536 CSTCRKRVGLTGF---NCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKL 366 C C+ ++ L +CRCG ++C HR ++H+C FD+ + ++K KL Sbjct: 157 CFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR-----GREEAIMKMVKL 211 Query: 365 DKI*ERVGKT 336 D+ +VG++ Sbjct: 212 DR---KVGRS 218
>ZFAN3_HUMAN (Q9H8U3) AN1-type zinc finger protein 3 (Testis-expressed sequence| 27) Length = 227 Score = 40.0 bits (92), Expect = 0.006 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 3/70 (4%) Frame = -1 Query: 536 CSTCRKRVGLTGF---NCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKL 366 C C+ ++ L +CRCG ++C HR ++H+C FD+ + ++K KL Sbjct: 157 CFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGR-----GREEAIMKMVKL 211 Query: 365 DKI*ERVGKT 336 D+ +VG++ Sbjct: 212 DR---KVGRS 218
>ZFAN3_XENLA (Q66J85) AN1-type zinc finger protein 3 homolog| Length = 226 Score = 39.7 bits (91), Expect = 0.008 Identities = 17/54 (31%), Positives = 31/54 (57%) Frame = -1 Query: 497 NCRCGNLYCATHRYSDKHECKFDYRAAAMDAIAKANPVVKAEKLDKI*ERVGKT 336 +CRCG ++C HR ++H+C FD+ + ++K KLD+ +VG++ Sbjct: 172 SCRCGYVFCMLHRLPEQHDCTFDHMGR-----GREEAIMKMVKLDR---KVGRS 217
>ERBB2_MESAU (Q60553) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1254 Score = 35.0 bits (79), Expect = 0.19 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -2 Query: 304 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 188 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_HUMAN (P04626) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Tyrosine kinase-type cell surface receptor HER2) (MLN 19) Length = 1255 Score = 35.0 bits (79), Expect = 0.19 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -2 Query: 304 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 188 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_CANFA (O18735) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) Length = 1259 Score = 35.0 bits (79), Expect = 0.19 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = -2 Query: 304 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 188 S C+ A L F+H+G C L C A+V + T + P P G Sbjct: 250 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMPNPEG 287
>ERBB2_RAT (P06494) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) (Epidermal growth factor receptor-related protein) Length = 1257 Score = 31.6 bits (70), Expect = 2.1 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = -2 Query: 304 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 188 S C+ A L F+H+G C L C A+V + T + P G Sbjct: 251 SDCL-ACLHFNHSGICELHCPALVTYNTDTFESMHNPEG 288
>ECAR_ECHCA (Q90495) Ecarin precursor (EC 3.4.24.-)| Length = 616 Score = 31.2 bits (69), Expect = 2.7 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 7/44 (15%) Frame = -1 Query: 527 CRKRVGLTG--FNC-----RCGNLYCATHRYSDKHECKFDYRAA 417 C K +G G F C +CG LYC + + CK DY A Sbjct: 542 CTKEIGYYGKRFPCAPQDVKCGRLYCLDNSFKKNMRCKNDYSYA 585
>OMLA_PSEAE (O68562) Outer membrane lipoprotein omlA precursor| Length = 176 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Frame = -3 Query: 621 EGA*SPAQPADIAVPSEAAMESPKGPKPVQHLQKE-GRAHRIQLPVREPL 475 EG+ + QPAD P E PK ++ LQ+E A + +P EPL Sbjct: 122 EGSTTVTQPADQQKPEAQKEEPPKPGSTLEQLQREVDEAQPVPVPTPEPL 171
>ERBB2_MOUSE (P70424) Receptor tyrosine-protein kinase erbB-2 precursor (EC| 2.7.10.1) (p185erbB2) (C-erbB-2) (NEU proto-oncogene) Length = 1256 Score = 30.8 bits (68), Expect = 3.6 Identities = 14/39 (35%), Positives = 21/39 (53%) Frame = -2 Query: 304 SSCVFAALSFHHAGFCNLSCWAIVMHGTRASAAAPGPNG 188 S C+ A L F+H+G C L C A++ + T + P G Sbjct: 251 SDCL-ACLHFNHSGICELHCPALITYNTDTFESMLNPEG 288
>HELS_METTH (O26901) Putative ski2-type helicase (EC 3.6.1.-)| Length = 690 Score = 29.6 bits (65), Expect = 7.9 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -2 Query: 328 PKSICATSSSCVFAALSFHHAGFCN 254 P S C + C+ A ++FHHAG N Sbjct: 278 PTSTCLKLAECLEAGIAFHHAGLFN 302
>RUVC_PORGI (Q7MUZ6) Crossover junction endodeoxyribonuclease ruvC (EC| 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) Length = 189 Score = 29.6 bits (65), Expect = 7.9 Identities = 18/54 (33%), Positives = 29/54 (53%) Frame = -3 Query: 591 DIAVPSEAAMESPKGPKPVQHLQKEGRAHRIQLPVREPLLRDAPLLGQARVQVR 430 D +P E A+E+P K VQ + K GRA + + L RD P+ A ++++ Sbjct: 62 DEFLPDEMAIEAPFFGKNVQSMLKLGRAQGVAMAA--ALARDIPITEYAPMRIK 113
>RUVC_BACFN (Q5LAS7) Crossover junction endodeoxyribonuclease ruvC (EC| 3.1.22.4) (Holliday junction nuclease ruvC) (Holliday juction resolvase ruvC) Length = 188 Score = 29.6 bits (65), Expect = 7.9 Identities = 17/52 (32%), Positives = 29/52 (55%) Frame = -3 Query: 582 VPSEAAMESPKGPKPVQHLQKEGRAHRIQLPVREPLLRDAPLLGQARVQVRL 427 +P E A+E+P K VQ + K GRA + + L RD P+ A +++++ Sbjct: 67 LPDELAIEAPFFGKNVQSMLKLGRAQGVAMAA--ALSRDIPITEYAPLKIKM 116
>PALA_ASPOR (Q5KU05) pH-response regulator protein palA/RIM20| Length = 828 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/55 (34%), Positives = 22/55 (40%) Frame = -3 Query: 606 PAQPADIAVPSEAAMESPKGPKPVQHLQKEGRAHRIQLPVREPLLRDAPLLGQAR 442 PAQP A P + + P P+PVQH Q P EPL P R Sbjct: 753 PAQPVQPAQPVQPPNQLPPQPQPVQH----------QPPRDEPLTAPQPTRANTR 797 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,197,060 Number of Sequences: 219361 Number of extensions: 1528772 Number of successful extensions: 5467 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 4993 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5464 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
