>ADC_CLOAB (P23670) Acetoacetate decarboxylase (EC 4.1.1.4) (ADC) (AAD)|
          Length = 244

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +1

Query: 49  SDITTHAVSSSPSRLQDNTFKASTLPNMP---LLLSIHFLLDIELPSRAVI 192
           +D+T H   + P+RLQ      + L ++P   ++ S H L DI LP   VI
Sbjct: 189 TDVTVHEAWTGPTRLQLFDHAMAPLNDLPVKEIVSSSHILADIILPRAEVI 239

>AOC2_HUMAN (O75106) Retina-specific copper amine oxidase precursor (EC|
           1.4.3.6) (RAO) (Amine oxidase [copper-containing])
          Length = 756

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 187 VIRKPIPPPRGAQFAGNRPWPMPAP 261
           V+R P+PPP GA    +R  P P P
Sbjct: 282 VVRVPLPPPNGASSLRSRNSPGPLP 306

>SMN_HUMAN (Q16637) Survival motor neuron protein (Component of gems 1)|
           (Gemin-1)
          Length = 294

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 6/34 (17%)
 Frame = +1

Query: 199 PIPPPR------GAQFAGNRPWPMPAPSHILPIW 282
           P+P PR      G +F G  P P P P H+L  W
Sbjct: 199 PMPGPRLGPGKPGLKFNGPPPPPPPPPPHLLSCW 232

>CASC3_MOUSE (Q8K3W3) Protein CASC3 (Cancer susceptibility candidate gene 3|
           protein homolog) (Metastatic lymph node protein 51
           homolog) (MLN 51 protein homolog) (Barentsz protein)
           (Btz)
          Length = 697

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 3/71 (4%)
 Frame = -2

Query: 275 GRICEGA--GIGQGLFPAN*APRGGGMGLRITARDGNSMSRRKWMERRRGMFG-RVEALK 105
           G  C G+  G G G  P+    RGGG+ LR     G   +     E   GM G  V +  
Sbjct: 32  GGSCSGSVGGGGSGSLPSQRGGRGGGLHLRRVESGGAKSAEESECESEDGMEGDAVLSDY 91

Query: 104 VLS*SLEGEED 72
             +   EGEED
Sbjct: 92  ESAEDSEGEED 102

>CO020_HUMAN (Q9H611) Protein C15orf20|
          Length = 266

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +1

Query: 172 LPSRAVIRKPIPPPRGAQFAGNRP-WPMPAPSHILP 276
           +P   ++++P+ P  GA+ +   P WP+P     LP
Sbjct: 166 VPDTTLVKRPVEPQAGAEPSTEAPRWPLPVKRLSLP 201

>CASC3_RAT (Q8K3X0) Protein CASC3 (Cancer susceptibility candidate gene 3|
           protein homolog) (Barentsz protein) (Btz)
          Length = 699

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -2

Query: 275 GRICEGA--GIGQGLFPAN*APRGGGMGLRITARDGNSMSRRKWMERRRGMFG 123
           G  C G+  G G G  P+    RGGG+ LR     G   +     E   GM G
Sbjct: 32  GGSCSGSAGGGGSGSLPSQRGGRGGGLHLRRVESGGAKSAEESECESEDGMEG 84

>FOR3_SCHPO (O94532) Formin-3|
          Length = 1461

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +1

Query: 79  SPSRLQD--NTFKASTLPNMPLLLSIHFLLDIELPSRAVIRKPIPPPRGAQFAGNRPWPM 252
           +PS+ +D   +F  S + + P  L       +E   + +++ P PPP         P P+
Sbjct: 690 TPSKTEDLDESFSGSEISSSPSPLLPDVSDTVEEQQKLLLKSPPPPPPAVIVPTPAPAPI 749

Query: 253 PAP 261
           P P
Sbjct: 750 PVP 752

>UBQL1_MOUSE (Q8R317) Ubiquilin-1 (Protein linking IAP with cytoskeleton 1)|
           (PLIC-1)
          Length = 582

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 10  IQKKKDXPS-HPVHSDITTHAVSSSPSRLQDNTFKASTLP 126
           I K +D  S H +H  +T H V  + +R QDN+ + +  P
Sbjct: 75  ILKDQDTLSQHGIHDGLTVHLVIKTQNRPQDNSAQQTNAP 114

>SNX41_CRYNE (Q5KKB9) Sorting nexin-41|
          Length = 638

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 21/80 (26%), Positives = 31/80 (38%)
 Frame = +1

Query: 22  KDXPSHPVHSDITTHAVSSSPSRLQDNTFKASTLPNMPLLLSIHFLLDIELPSRAVIRKP 201
           ++   HP     T   V S  S    +T  A T  ++  L       +IE     +  KP
Sbjct: 541 REIDPHPNRPAQTQTQVQSQQSHAGPSTLHAQTEDDVSKLGVDAMKNEIERVEIEIADKP 600

Query: 202 IPPPRGAQFAGNRPWPMPAP 261
           +P P  A+  G+   P P P
Sbjct: 601 LPKPSLAETGGDGVVPSPQP 620


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 48,439,216
Number of Sequences: 219361
Number of extensions: 1014000
Number of successful extensions: 3383
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3368
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)