>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 139      ctcctctccatccacttcctcc 160
                ||||||||||||||||||||||
Sbjct: 23514892 ctcctctccatccacttcctcc 23514913

>gb|AC092780.6| Oryza sativa chromosome 3 BAC OSJNBb0079B16 genomic sequence, complete
             sequence
          Length = 144383

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 139   ctcctctccatccacttcctcc 160
             ||||||||||||||||||||||
Sbjct: 67365 ctcctctccatccacttcctcc 67344

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.26
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 139      ctcctctccatccacttcctcc 160
                ||||||||||||||||||||||
Sbjct: 23507920 ctcctctccatccacttcctcc 23507941

>gb|AC144902.2| Mus musculus BAC clone RP23-400D9 from chromosome 5, complete sequence
          Length = 204858

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 139    ctcctctccatccacttcctc 159
              |||||||||||||||||||||
Sbjct: 159531 ctcctctccatccacttcctc 159551

>emb|AL035209.1|HS7H11 Human DNA sequence from clone XX-D7H11 on chromosome 1q32.2-32.3
             Contains the 3' end of the MCP gene for membrane cofactor
             protein (CD46, trophoblast-lymphocyte cross-reactive
             antigen) and the 3' end of a novel gene, complete sequence
          Length = 77551

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 129   catgcctcttctcctctccatccac 153
             ||||||||||||||||| |||||||
Sbjct: 35546 catgcctcttctcctctgcatccac 35522

>dbj|AK125868.1| Homo sapiens cDNA FLJ43880 fis, clone TESTI4009022
          Length = 3526

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 129  catgcctcttctcctctccatccac 153
            ||||||||||||||||| |||||||
Sbjct: 2171 catgcctcttctcctctgcatccac 2147

>gb|AE012269.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 177
            of 460 of the complete genome
          Length = 11138

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 239  ggccttggccgatgccagctc 259
            |||||||||||||||||||||
Sbjct: 9737 ggccttggccgatgccagctc 9757

>gb|AC084393.20| Homo sapiens 12q BAC RP11-453E3 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 182489

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 129   catgcctcttctcctctccatccac 153
             ||||||||||||||||| |||||||
Sbjct: 72956 catgcctcttctcctctgcatccac 72932

>ref|NM_001039568.1| Homo sapiens hypothetical protein LOC148696 (LOC148696), mRNA
          Length = 3526

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 129  catgcctcttctcctctccatccac 153
            ||||||||||||||||| |||||||
Sbjct: 2171 catgcctcttctcctctgcatccac 2147

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 239     ggccttggccgatgccagctc 259
               |||||||||||||||||||||
Sbjct: 3080769 ggccttggccgatgccagctc 3080749

>gb|AC154458.2| Mus musculus BAC clone RP24-162I9 from chromosome 17, complete sequence
          Length = 183027

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 137    ttctcctctccatccacttcctcct 161
              ||||||||||| |||||||||||||
Sbjct: 120957 ttctcctctccctccacttcctcct 120933

>emb|AL805950.11| Mouse DNA sequence from clone RP23-134I15 on chromosome 2, complete
              sequence
          Length = 237337

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 135    tcttctcctctccatccacttcctccttg 163
              ||||||||||| || ||||||||||||||
Sbjct: 147353 tcttctcctcttcacccacttcctccttg 147325

>gb|AC137120.22| Mus musculus chromosome 15, clone RP23-255G14, complete sequence
          Length = 203811

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    caaggcttcaagacaacacc 105
             ||||||||||||||||||||
Sbjct: 37438 caaggcttcaagacaacacc 37419

>ref|XM_419369.1| PREDICTED: Gallus gallus similar to MGC53127 protein (LOC421304),
           mRNA
          Length = 2601

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 136 cttctcctctccatccactt 155
           ||||||||||||||||||||
Sbjct: 408 cttctcctctccatccactt 389

>gb|AC127554.4| Mus musculus BAC clone RP24-323K23 from chromosome 8, complete sequence
          Length = 178416

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                         
Query: 133   cctcttctcctctccatccacttcctcc 160
             |||||||||||||| |||||||||||||
Sbjct: 73213 cctcttctcctctc-atccacttcctcc 73239

>gb|AC087392.10| Homo sapiens chromosome 17, clone RP11-676J12, complete sequence
          Length = 196772

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 31    ccatctcatcctgtccactc 50
             ||||||||||||||||||||
Sbjct: 96266 ccatctcatcctgtccactc 96247

>gb|AF047651.1| Caenorhabditis elegans cosmid C05D2, complete sequence
          Length = 46437

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 69    tgtgtcttcttccccttcaa 88
             ||||||||||||||||||||
Sbjct: 41602 tgtgtcttcttccccttcaa 41621

>emb|AL137845.9| Human DNA sequence from clone RP5-961K14 on chromosome X Contains a
             MYST histone acetyltransferase 2 (MYST2) pseudogene, a
             zinc finger protein 265 (ZNF265) pseudogene and a CpG
             island, complete sequence
          Length = 116457

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 68    ctgtgtcttcttccccttcaaggc 91
             |||||||||| |||||||||||||
Sbjct: 21142 ctgtgtcttcctccccttcaaggc 21119

>gb|BC079199.1| Rattus norvegicus hypothetical protein LOC500825, mRNA (cDNA clone
            MGC:94252 IMAGE:7131579), complete cds
          Length = 1759

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  ctctccatccacttcctcct 161
            ||||||||||||||||||||
Sbjct: 1298 ctctccatccacttcctcct 1279

>ref|NM_001025052.1| Rattus norvegicus hypothetical protein LOC500825 (LOC500825), mRNA
          Length = 1759

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  ctctccatccacttcctcct 161
            ||||||||||||||||||||
Sbjct: 1298 ctctccatccacttcctcct 1279

>gb|AC107057.5| Homo sapiens BAC clone RP11-554B4 from 2, complete sequence
          Length = 87560

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 67    gctgtgtcttcttccccttc 86
             ||||||||||||||||||||
Sbjct: 85093 gctgtgtcttcttccccttc 85112

>emb|BX005290.10| Zebrafish DNA sequence from clone CH211-127M10 in linkage group 6,
             complete sequence
          Length = 186793

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 133   cctcttctcctctccatccacttc 156
             ||||||||||||||| ||||||||
Sbjct: 65203 cctcttctcctctccttccacttc 65180

>gb|AC140198.4| Mus musculus BAC clone RP23-255C4 from 16, complete sequence
          Length = 198007

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 93     tcaagacaacaccttcaagg 112
              ||||||||||||||||||||
Sbjct: 121353 tcaagacaacaccttcaagg 121334


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,261,533
Number of Sequences: 3902068
Number of extensions: 2261533
Number of successful extensions: 50013
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 49918
Number of HSP's gapped (non-prelim): 95
length of query: 306
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 284
effective length of database: 17,147,199,772
effective search space: 4869804735248
effective search space used: 4869804735248
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)