ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34o10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105872.1| Zea mays PCO079046 mRNA sequence 111 3e-21
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 82 2e-12
4emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa... 82 2e-12
5gb|BT017471.1| Zea mays clone EL01N0408D01.c mRNA sequence 76 1e-10
6dbj|AK101913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.032
7gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 46 0.13
8emb|BX005072.20| Human DNA sequence from clone XXyac-59F3 on chr... 44 0.51
9emb|AL450334.15| Human DNA sequence from clone RP11-556L1 on chr... 44 0.51
10gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, compl... 44 0.51
11gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, compl... 44 0.51
12gb|AC092243.1|AC092243 Drosophila melanogaster, chromosome 2L, r... 44 0.51
13gb|AC092223.1|AC092223 Drosophila melanogaster, chromosome 2L, r... 44 0.51
14gb|AE003641.3| Drosophila melanogaster chromosome 2L, section 50... 44 0.51
15ref|NM_101374.2| Arabidopsis thaliana unknown protein AT1G15040 ... 42 2.0
16gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8... 42 2.0
17emb|AL590995.14| Human DNA sequence from clone RP11-475B22 on ch... 42 2.0
18emb|AL590673.6| Human DNA sequence from clone RP11-202K9 on chro... 42 2.0
19gb|AF332456.1| Arabidopsis thaliana clone C00162 (e) unknown pro... 42 2.0
20emb|BX817147.1|CNS0AD8C Arabidopsis thaliana Full-length cDNA Co... 42 2.0
21dbj|AB205497.1| Uncultured bacterium gene for putative aminotran... 42 2.0
22gb|AC012189.3|T15D22 Arabidopsis thaliana chromosome 1 BAC T15D2... 42 2.0
23ref|NM_214275.1| Sus scrofa formiminotransferase-cyclodeaminase ... 42 2.0
24gb|L16507.1|PIGFORM Sus scrofa formiminotransferase-cyclodeamina... 42 2.0
25gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 7.9
26gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 7.9
27gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
28gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 7.9
29gb|BC044759.2| Mus musculus progesterone receptor membrane compo... 40 7.9
30ref|XM_987808.1| PREDICTED: Mus musculus progesterone receptor m... 40 7.9
31ref|XM_130859.8| PREDICTED: Mus musculus progesterone receptor m... 40 7.9
32ref|XM_911696.2| PREDICTED: Mus musculus progesterone receptor m... 40 7.9
33gb|AC102769.11| Mus musculus chromosome 17, clone RP23-89A3, com... 40 7.9
34gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, comple... 40 7.9
35gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, co... 40 7.9
36gb|AC117573.9| Mus musculus chromosome 3, clone RP23-30D1, compl... 40 7.9
37emb|AL356953.17| Human DNA sequence from clone RP11-572A16 on ch... 40 7.9
38gb|AC116459.8| Mus musculus, clone RP23-35F4, complete sequence 40 7.9
39gb|AF542968.1| Triticum aestivum myo-inositol 1-phosphate syntha... 40 7.9
40emb|AL022149.2|HS122K23 Human DNA sequence from clone RP1-122K23... 40 7.9
41gb|BT009043.1| Triticum aestivum clone wdk5c.pk006.i16:fis, full... 40 7.9
42ref|XM_778876.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.9
43emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.9
44dbj|AK140064.1| Mus musculus adult male corpora quadrigemina cDN... 40 7.9
45dbj|AK165560.1| Mus musculus brain CRL-1443 BC3H1 cDNA, RIKEN fu... 40 7.9
46gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 7.9
47dbj|AK014543.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 40 7.9
48dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.9
49gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, com... 40 7.9
50gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromo... 40 7.9
51dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.9
52emb|BX842238.2| Mouse DNA sequence from clone RP24-159M2 on chro... 40 7.9
53gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 7.9
54gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 7.9
55gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.9
56gb|AF056325.1|AF056325 Hordeum vulgare myo-inositol 1-phosphate ... 40 7.9
57emb|CT025641.10| Mouse DNA sequence from clone RP24-322A17 on ch... 40 7.9 
>gb|AY105872.1| Zea mays PCO079046 mRNA sequence
          Length = 1346

 Score =  111 bits (56), Expect = 3e-21
 Identities = 95/108 (87%)
 Strand = Plus / Minus

                                                                       
Query: 475 ccaccggcgtcgcgttcatgtagaacatgtagaggaccatctggatcatcccgaaggtga 534
           |||||||||||  |||||||||||||| |||||| |||||||||| ||  |||||| |||
Sbjct: 902 ccaccggcgtcttgttcatgtagaacacgtagagcaccatctggaccacgccgaagatga 843

                                                           
Query: 535 agccaaggatgtttgggagcgcgacgtatttgtccttgatgagcaggc 582
           | || |||| |||||| |||||||||||||||||||||||||| ||||
Sbjct: 842 accccaggacgtttggaagcgcgacgtatttgtccttgatgaggaggc 795
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                            
Query: 475      ccaccggcgtcgcgttcatgtagaacatgtagaggaccatctggatcatcccgaaggtga 534
                ||||||||||||||||||||||||||| ||||||  ||||||||| ||  ||||| ||||
Sbjct: 17343809 ccaccggcgtcgcgttcatgtagaacacgtagagccccatctggaccacaccgaatgtga 17343868

                             
Query: 535      agccaaggatgtt 547
                |||| ||||||||
Sbjct: 17343869 agcccaggatgtt 17343881



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 554      cgcgacgtatttgtccttgatgagcaggc 582
                |||||||||||||||||||||||| ||||
Sbjct: 17344003 cgcgacgtatttgtccttgatgagaaggc 17344031
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Plus

                                                                            
Query: 475      ccaccggcgtcgcgttcatgtagaacatgtagaggaccatctggatcatcccgaaggtga 534
                ||||||||||||||||||||||||||| ||||||  ||||||||| ||  ||||| ||||
Sbjct: 17298180 ccaccggcgtcgcgttcatgtagaacacgtagagccccatctggaccacaccgaatgtga 17298239

                             
Query: 535      agccaaggatgtt 547
                |||| ||||||||
Sbjct: 17298240 agcccaggatgtt 17298252



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 554      cgcgacgtatttgtccttgatgagcaggc 582
                |||||||||||||||||||||||| ||||
Sbjct: 17298374 cgcgacgtatttgtccttgatgagaaggc 17298402
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>emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa0021B03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 154826

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 65/73 (89%)
 Strand = Plus / Minus

                                                                         
Query: 475   ccaccggcgtcgcgttcatgtagaacatgtagaggaccatctggatcatcccgaaggtga 534
             ||||||||||||||||||||||||||| ||||||  ||||||||| ||  ||||| ||||
Sbjct: 59560 ccaccggcgtcgcgttcatgtagaacacgtagagccccatctggaccacaccgaatgtga 59501

                          
Query: 535   agccaaggatgtt 547
             |||| ||||||||
Sbjct: 59500 agcccaggatgtt 59488



 Score = 50.1 bits (25), Expect = 0.008
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 554   cgcgacgtatttgtccttgatgagcaggc 582
             |||||||||||||||||||||||| ||||
Sbjct: 59366 cgcgacgtatttgtccttgatgagaaggc 59338
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>gb|BT017471.1| Zea mays clone EL01N0408D01.c mRNA sequence
          Length = 1159

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 53/58 (91%)
 Strand = Plus / Minus

                                                                     
Query: 525 ccgaaggtgaagccaaggatgtttgggagcgcgacgtatttgtccttgatgagcaggc 582
           |||||||||||||| || | |||||| || ||||||||||||||||||||||||||||
Sbjct: 487 ccgaaggtgaagccgagcacgtttggcagggcgacgtatttgtccttgatgagcaggc 430
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>dbj|AK101913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071H09, full
           insert sequence
          Length = 1494

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 60/72 (83%)
 Strand = Plus / Minus

                                                                       
Query: 511 ccatctggatcatcccgaaggtgaagccaaggatgtttgggagcgcgacgtatttgtcct 570
           |||||||||| |  ||||||| |||||| || | ||| || || ||||| ||||||||||
Sbjct: 854 ccatctggatgacgccgaaggagaagcccagcacgttgggaagagcgacatatttgtcct 795

                       
Query: 571 tgatgagcaggc 582
           ||||||| ||||
Sbjct: 794 tgatgaggaggc 783
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 46.1 bits (23), Expect = 0.13
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 394     ccttgccgacgttgatcacgacgacgtggtc 424
               ||||| || ||||||||||||||||||||||
Sbjct: 3505081 ccttgtcggcgttgatcacgacgacgtggtc 3505111
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>emb|BX005072.20| Human DNA sequence from clone XXyac-59F3 on chromosome 10 Contains the
             5' end of a novel gene, a novel gene (MGC35285) and a CpG
             island, complete sequence
          Length = 97407

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 436   ccttccatgcctctttcccctccttg 461
             |||||||| |||||||||||||||||
Sbjct: 44275 ccttccatacctctttcccctccttg 44250
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>emb|AL450334.15| Human DNA sequence from clone RP11-556L1 on chromosome 10 Contains gene
             DKFZP566K0524, the gene for a novel protein similar to
             tyrosine phosphatase (MGC35285), the 3' end of a KIAA0187
             pseudogene, the 3' end of a novel gene, the gene for a
             novel protein similar to ARF GTPase-activating protein
             (MRIP2) and a CpG island, complete sequence
          Length = 171930

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 436   ccttccatgcctctttcccctccttg 461
             |||||||| |||||||||||||||||
Sbjct: 63794 ccttccatacctctttcccctccttg 63769
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>gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, complete sequence
          Length = 154259

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 436   ccttccatgcctctttcccctccttg 461
             |||||||| |||||||||||||||||
Sbjct: 97949 ccttccatacctctttcccctccttg 97974
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>gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, complete sequence
          Length = 186308

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 436   ccttccatgcctctttcccctccttg 461
             |||||||| |||||||||||||||||
Sbjct: 61153 ccttccatacctctttcccctccttg 61128
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>gb|AC092243.1|AC092243 Drosophila melanogaster, chromosome 2L, region 34D-34E, BAC clone
              BACR09N24, complete sequence
          Length = 158758

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 78     ccgaatatacggaatcatcatc 99
              ||||||||||||||||||||||
Sbjct: 145477 ccgaatatacggaatcatcatc 145498
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>gb|AC092223.1|AC092223 Drosophila melanogaster, chromosome 2L, region 34D-35X, BAC clone
              BACR16P12, complete sequence
          Length = 171598

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 78     ccgaatatacggaatcatcatc 99
              ||||||||||||||||||||||
Sbjct: 128098 ccgaatatacggaatcatcatc 128077
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>gb|AE003641.3| Drosophila melanogaster chromosome 2L, section 50 of 83 of the complete
              sequence
          Length = 304772

 Score = 44.1 bits (22), Expect = 0.51
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 78     ccgaatatacggaatcatcatc 99
              ||||||||||||||||||||||
Sbjct: 277470 ccgaatatacggaatcatcatc 277449
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>ref|NM_101374.2| Arabidopsis thaliana unknown protein AT1G15040 transcript variant
            AT1G15040.2 mRNA, complete cds
          Length = 1753

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 109  gtttgttttacatacatacag 129
            |||||||||||||||||||||
Sbjct: 992  gtttgttttacatacatacag 1012
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>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete
             sequence
          Length = 271546

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 160   aatattatttttcttggaaaa 180
             |||||||||||||||||||||
Sbjct: 37263 aatattatttttcttggaaaa 37243
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>emb|AL590995.14| Human DNA sequence from clone RP11-475B22 on chromosome 6, complete
           sequence
          Length = 113362

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 107 tagtttgttttacatacatacagta 131
           |||||||||||||||| ||||||||
Sbjct: 402 tagtttgttttacataaatacagta 378
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>emb|AL590673.6| Human DNA sequence from clone RP11-202K9 on chromosome 6, complete
              sequence
          Length = 123236

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 107    tagtttgttttacatacatacagta 131
              |||||||||||||||| ||||||||
Sbjct: 121638 tagtttgttttacataaatacagta 121614
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>gb|AF332456.1| Arabidopsis thaliana clone C00162 (e) unknown protein (At1g15045)
           mRNA, complete cds
          Length = 1002

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 109 gtttgttttacatacatacag 129
           |||||||||||||||||||||
Sbjct: 933 gtttgttttacatacatacag 953
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>emb|BX817147.1|CNS0AD8C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH89ZF09 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1446

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 109  gtttgttttacatacatacag 129
            |||||||||||||||||||||
Sbjct: 988  gtttgttttacatacatacag 1008
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>dbj|AB205497.1| Uncultured bacterium gene for putative aminotransferase, partial
           cds, clone:sd2
          Length = 303

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 472 ccaccaccggcgtcgcgttca 492
           |||||||||||||||||||||
Sbjct: 56  ccaccaccggcgtcgcgttca 36
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>gb|AC012189.3|T15D22 Arabidopsis thaliana chromosome 1 BAC T15D22 sequence, complete
             sequence
          Length = 23652

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 109   gtttgttttacatacatacag 129
             |||||||||||||||||||||
Sbjct: 19365 gtttgttttacatacatacag 19345
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>ref|NM_214275.1| Sus scrofa formiminotransferase-cyclodeaminase (FTCD), mRNA
          Length = 1843

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 295  agcccgcccccggggccgccg 315
            |||||||||||||||||||||
Sbjct: 1099 agcccgcccccggggccgccg 1079
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>gb|L16507.1|PIGFORM Sus scrofa formiminotransferase-cyclodeaminase mRNA, complete cds
          Length = 1843

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 295  agcccgcccccggggccgccg 315
            |||||||||||||||||||||
Sbjct: 1099 agcccgcccccggggccgccg 1079
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 353    ctcggtgaccgggcgcacctcggc 376
              |||| |||||||||||||||||||
Sbjct: 976390 ctcgatgaccgggcgcacctcggc 976367
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 479     cggcgtcgcgttcatgtaga 498
               ||||||||||||||||||||
Sbjct: 2170327 cggcgtcgcgttcatgtaga 2170308
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>gb|AC137759.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0008H02, complete sequence
          Length = 143438

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 555   gcgacgtatttgtccttgatgagcaggc 582
             ||||| ||||||||||||||||| ||||
Sbjct: 81975 gcgacatatttgtccttgatgaggaggc 82002
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 479     cggcgtcgcgttcatgtaga 498
               ||||||||||||||||||||
Sbjct: 2300040 cggcgtcgcgttcatgtaga 2300059
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>gb|BC044759.2| Mus musculus progesterone receptor membrane component 2, mRNA (cDNA
            clone IMAGE:5061936), partial cds
          Length = 2951

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  atttttcttggaaaagaaaa 185
            ||||||||||||||||||||
Sbjct: 1580 atttttcttggaaaagaaaa 1561
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>ref|XM_987808.1| PREDICTED: Mus musculus progesterone receptor membrane component 2
            (Pgrmc2), mRNA
          Length = 3017

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  atttttcttggaaaagaaaa 185
            ||||||||||||||||||||
Sbjct: 1649 atttttcttggaaaagaaaa 1630
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>ref|XM_130859.8| PREDICTED: Mus musculus progesterone receptor membrane component 2,
            transcript variant 1 (Pgrmc2), mRNA
          Length = 3017

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  atttttcttggaaaagaaaa 185
            ||||||||||||||||||||
Sbjct: 1649 atttttcttggaaaagaaaa 1630
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>ref|XM_911696.2| PREDICTED: Mus musculus progesterone receptor membrane component 2,
            transcript variant 3 (Pgrmc2), mRNA
          Length = 3017

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  atttttcttggaaaagaaaa 185
            ||||||||||||||||||||
Sbjct: 1649 atttttcttggaaaagaaaa 1630
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>gb|AC102769.11| Mus musculus chromosome 17, clone RP23-89A3, complete sequence
          Length = 162417

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 27     cgtggtctataaacacacagaata 50
              |||||| |||||||||||||||||
Sbjct: 105757 cgtggtatataaacacacagaata 105734
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>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence
          Length = 141509

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   ctcatgcatgagccatgcat 236
             ||||||||||||||||||||
Sbjct: 65253 ctcatgcatgagccatgcat 65234
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>gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, complete sequence
          Length = 200790

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   atttttcttggaaaagaaaa 185
             ||||||||||||||||||||
Sbjct: 40220 atttttcttggaaaagaaaa 40239
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>gb|AC117573.9| Mus musculus chromosome 3, clone RP23-30D1, complete sequence
          Length = 239439

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    tttgttttacatacatacag 129
              ||||||||||||||||||||
Sbjct: 216401 tttgttttacatacatacag 216382
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>emb|AL356953.17| Human DNA sequence from clone RP11-572A16 on chromosome 1 Contains the
             3' end of a pseudogene similar to Mus musculus protein
             tyrosine phosphatase receptor type V Ptprv, the LGR6 gene
             for leucine-rich repeat-containing G protein-coupled
             receptor 6, the gene for a ubiquitin conjugating enzyme,
             the 5' end of the PPP1R12B gene for protein phosphatase 1
             regulatory (inhibitor) subunit 12B and four CpG islands,
             complete sequence
          Length = 177344

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 297   cccgcccccggggccgccgc 316
             ||||||||||||||||||||
Sbjct: 31515 cccgcccccggggccgccgc 31534
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>gb|AC116459.8| Mus musculus, clone RP23-35F4, complete sequence
          Length = 215030

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 110   tttgttttacatacatacag 129
             ||||||||||||||||||||
Sbjct: 25848 tttgttttacatacatacag 25829
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>gb|AF542968.1| Triticum aestivum myo-inositol 1-phosphate synthase-like mRNA,
           partial sequence
          Length = 819

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 405 ttgatcacgacgacgtggtc 424
           ||||||||||||||||||||
Sbjct: 377 ttgatcacgacgacgtggtc 358
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>emb|AL022149.2|HS122K23 Human DNA sequence from clone RP1-122K23 on chromosome Xq21.21-22.1,
             complete sequence
          Length = 122777

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   gaatattatttttcttggaa 178
             ||||||||||||||||||||
Sbjct: 58941 gaatattatttttcttggaa 58922
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>gb|BT009043.1| Triticum aestivum clone wdk5c.pk006.i16:fis, full insert mRNA
           sequence
          Length = 790

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 405 ttgatcacgacgacgtggtc 424
           ||||||||||||||||||||
Sbjct: 54  ttgatcacgacgacgtggtc 35
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>ref|XM_778876.1| PREDICTED: Strongylocentrotus purpuratus similar to Proprotein
            convertase subtilisin/kexin type 5 precursor (Proprotein
            convertase PC5) (Subtilisin/kexin-like protease PC5)
            (PC6) (Subtilisin-like proprotein convertase 6) (SPC6)
            (LOC578721), mRNA
          Length = 4011

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 552  agcgcgacgtatttgtccttgatg 575
            |||||||| |||||||||||||||
Sbjct: 3860 agcgcgacatatttgtccttgatg 3837
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    cggcgtcgcgttcatgtaga 498
              ||||||||||||||||||||
Sbjct: 461518 cggcgtcgcgttcatgtaga 461537
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>dbj|AK140064.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230117D02 product:progesterone
            receptor membrane component 2, full insert sequence
          Length = 2972

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  atttttcttggaaaagaaaa 185
            ||||||||||||||||||||
Sbjct: 1619 atttttcttggaaaagaaaa 1600
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>dbj|AK165560.1| Mus musculus brain CRL-1443 BC3H1 cDNA, RIKEN full-length enriched
           library, clone:G430007N18 product:progesterone receptor
           membrane component 2, full insert sequence
          Length = 1019

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 166 atttttcttggaaaagaaaa 185
           ||||||||||||||||||||
Sbjct: 822 atttttcttggaaaagaaaa 803
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 479     cggcgtcgcgttcatgtaga 498
               ||||||||||||||||||||
Sbjct: 1527026 cggcgtcgcgttcatgtaga 1527007
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>dbj|AK014543.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
            library, clone:4631434O19 product:MEMBRANE ASSOCIATED
            PROGESTERONE RECEPTOR COMPONENT 2 (PROGESTERONE MEMBRANE
            BINDING PROTEIN) (STEROID RECEPTOR PROTEIN DG6) homolog
            [Homo sapiens], full insert sequence
          Length = 2558

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 166  atttttcttggaaaagaaaa 185
            ||||||||||||||||||||
Sbjct: 1538 atttttcttggaaaagaaaa 1519
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 555      gcgacgtatttgtccttgatgagcaggc 582
                ||||| ||||||||||||||||| ||||
Sbjct: 17574164 gcgacatatttgtccttgatgaggaggc 17574191
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>gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, complete sequence
          Length = 183088

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 168   ttttcttggaaaagaaaaac 187
             ||||||||||||||||||||
Sbjct: 27202 ttttcttggaaaagaaaaac 27183
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>gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromosome 7, complete
              sequence
          Length = 168606

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 161    atattatttttcttggaaaagaaa 184
              |||||||||||||| |||||||||
Sbjct: 164789 atattatttttctttgaaaagaaa 164812
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 289     gggcaaagcccgcccccggggccg 312
               ||||||||||||||||||| ||||
Sbjct: 2551700 gggcaaagcccgcccccggcgccg 2551677
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>emb|BX842238.2| Mouse DNA sequence from clone RP24-159M2 on chromosome 2, complete
             sequence
          Length = 86221

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 441   catgcctctttcccctcctt 460
             ||||||||||||||||||||
Sbjct: 77280 catgcctctttcccctcctt 77261
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 479     cggcgtcgcgttcatgtaga 498
               ||||||||||||||||||||
Sbjct: 2522300 cggcgtcgcgttcatgtaga 2522281
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 382     agctcttgtcggccttgccg 401
               ||||||||||||||||||||
Sbjct: 2085171 agctcttgtcggccttgccg 2085152
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                            
Query: 555      gcgacgtatttgtccttgatgagcaggc 582
                ||||| ||||||||||||||||| ||||
Sbjct: 17667988 gcgacatatttgtccttgatgaggaggc 17668015
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>gb|AF056325.1|AF056325 Hordeum vulgare myo-inositol 1-phosphate synthase mRNA, complete cds
          Length = 2152

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 405  ttgatcacgacgacgtggtc 424
            ||||||||||||||||||||
Sbjct: 1302 ttgatcacgacgacgtggtc 1283
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>emb|CT025641.10| Mouse DNA sequence from clone RP24-322A17 on chromosome 17, complete
             sequence
          Length = 122522

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 27    cgtggtctataaacacacagaata 50
             |||||| |||||||||||||||||
Sbjct: 23715 cgtggtatataaacacacagaata 23692


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,419,623
Number of Sequences: 3902068
Number of extensions: 5419623
Number of successful extensions: 107500
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 106800
Number of HSP's gapped (non-prelim): 700
length of query: 582
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 559
effective length of database: 17,143,297,704
effective search space: 9583103416536
effective search space used: 9583103416536
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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