ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34o05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1THIO_RAT (P11232) Thioredoxin 31 4.6
2THIO_MOUSE (P10639) Thioredoxin (ATL-derived factor) (ADF) 31 4.6
31433_TRIHA (Q99002) 14-3-3 protein homolog (Th1433) 31 4.6
4COLI_LEPOS (Q91082) Corticotropin-lipotropin precursor (Pro-opio... 30 6.1
5AA2DB_BRARE (Q8JG69) Alpha-2Db adrenergic receptor (Alpha-2Db ad... 30 7.9
6PRP1_BOMMO (Q27451) Phenoloxidase subunit 1 precursor (EC 1.14.1... 30 7.9

>THIO_RAT (P11232) Thioredoxin|
          Length = 104

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 666 SLCEKYPHIVHEEYSEEIDHEKCQDLVPDCD 574
           SLC+KY ++V  E    +D + CQD+  DC+
Sbjct: 43  SLCDKYSNVVFLE----VDVDDCQDVAADCE 69



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>THIO_MOUSE (P10639) Thioredoxin (ATL-derived factor) (ADF)|
          Length = 104

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -3

Query: 666 SLCEKYPHIVHEEYSEEIDHEKCQDLVPDCD 574
           SLC+KY ++V  E    +D + CQD+  DC+
Sbjct: 43  SLCDKYSNVVFLE----VDVDDCQDVAADCE 69



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>1433_TRIHA (Q99002) 14-3-3 protein homolog (Th1433)|
          Length = 262

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = -3

Query: 729 DIVGWRTSSIRRNTELPKWEESLCEKYPHIVHEEYSEEIDHEK---CQDLVPDCDFDLLE 559
           +++G R +S R  T + + EES        + +EY ++I++E    C D++   D  L+ 
Sbjct: 50  NVIGARRASWRIVTSIEQKEESKGNSSQVTLIKEYRQKIENELAKICDDILEVLDQHLIP 109

Query: 558 EKMVTGLRRVSWEKVDVSFHASMRSFA 478
               +G  +V + K+   +H  +  FA
Sbjct: 110 SAK-SGESKVFYHKIKGDYHRYLAEFA 135



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>COLI_LEPOS (Q91082) Corticotropin-lipotropin precursor (Pro-opiomelanocortin)|
           (POMC) [Contains: NPP; Gamma-melanotropin-like segment;
           Corticotropin (Adrenocorticotropic hormone) (ACTH);
           Melanotropin alpha (Alpha-MSH); Corticotropin-like
           intermediary pept
          Length = 259

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 651 YPHIVHEEYSEEIDHEKCQDLVPDCDFDLLEE 556
           YP+ V EE +E    E  +DL+ D D+ LLEE
Sbjct: 157 YPNGVEEESAEAYPTEMRRDLMSDLDYPLLEE 188



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>AA2DB_BRARE (Q8JG69) Alpha-2Db adrenergic receptor (Alpha-2Db adrenoceptor)|
           (Alpha-2Db adrenoreceptor) (Alpha(2Db)AR)
          Length = 415

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 415 VMNFHHNARFAEGRHLDNAVRCETPHARV 501
           V N H N+RFA+ R ++ A  C  P+ R+
Sbjct: 274 VSNRHRNSRFAKSRKVEGAQSCPKPNGRL 302



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>PRP1_BOMMO (Q27451) Phenoloxidase subunit 1 precursor (EC 1.14.18.1)|
           (Tyrosinase 1) (PO 1)
          Length = 685

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 15/26 (57%), Positives = 19/26 (73%)
 Frame = +3

Query: 561 PVSQNRSLVPNLDTSRDRFLQSIPHV 638
           PV Q RS V  L+T RDRFLQ+I ++
Sbjct: 300 PVDQIRSDVSELETWRDRFLQAIENM 325


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,031,757
Number of Sequences: 219361
Number of extensions: 2278603
Number of successful extensions: 5594
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5592
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7819576386
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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