ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal35c22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RK34_SPIOL (P82244) 50S ribosomal protein L34, chloroplast precu... 64 3e-10
2TATB_RHIME (Q92Q24) Sec-independent protein translocase protein ... 31 2.4
3EAF3_CANGA (Q6FN68) Chromatin modification-related protein EAF3 30 7.1

>RK34_SPIOL (P82244) 50S ribosomal protein L34, chloroplast precursor|
          Length = 152

 Score = 64.3 bits (155), Expect = 3e-10
 Identities = 35/71 (49%), Positives = 41/71 (57%)
 Frame = -1

Query: 330 LTTRRPRGLQIRAGKAALCLTKRSRSRKSLARVHGFXXXXXXXXXXXXXXXXXXXXXKIL 151
           ++T R R   +RAGKAALCLTKRSRSRKSLAR HGF                     KIL
Sbjct: 79  VSTDRCRRFVVRAGKAALCLTKRSRSRKSLARTHGFRLRMSTTSGRALLKRRRAKGRKIL 138

Query: 150 CTKSNSPTGTK 118
           CTK+N  +G +
Sbjct: 139 CTKTNPSSGKR 149



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>TATB_RHIME (Q92Q24) Sec-independent protein translocase protein tatB homolog|
          Length = 215

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 21/49 (42%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = +2

Query: 458 MNELRRNG-EAEAPMGPALWGRRPPPIATAEILPEWSERDAIGEARANA 601
           MN LR+ G E ++ +  A    RPP  AT E L E    DA+GE  A A
Sbjct: 82  MNPLRQLGNEIKSDLQKATTPDRPPASATPEPLVEPVNTDAVGETAAKA 130



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>EAF3_CANGA (Q6FN68) Chromatin modification-related protein EAF3|
          Length = 355

 Score = 29.6 bits (65), Expect = 7.1
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +1

Query: 475 KRGGGGPHGASLMGAETAADSHRRDPPGVER 567
           KRGGGG H  S  G   +    RRD    ER
Sbjct: 113 KRGGGGAHSESNHGGRRSGSGDRRDSNAEER 143


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,813,884
Number of Sequences: 219361
Number of extensions: 1276165
Number of successful extensions: 3536
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3534
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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