ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal34n11 |
|---|---|
| Clone Library Name | barley_pub |
>LBD16_ARATH (Q9SLB7) LOB domain protein 16| Length = 245 Score = 32.7 bits (73), Expect = 1.0 Identities = 18/49 (36%), Positives = 24/49 (48%) Frame = +1 Query: 169 SHHLPLHNILFPLSPVDSQKIAEVSQSIKSNMTNSTENVGSTEFGPGGG 315 +HH P + + P +PV Q E S S S+ +T NV T GGG Sbjct: 157 NHHQPYYGHVNPNNPVSPQSSLEESFSNTSSDVTTTANVRETHHQTGGG 205
>HMOC_DROME (P22810) Homeotic protein ocelliless (Protein orthodenticle)| Length = 671 Score = 31.2 bits (69), Expect = 2.9 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 7/86 (8%) Frame = +1 Query: 241 SQSIKSNMTNSTENVGSTEFGPGGGDLVVLASRCGGFVSSGATS----MVSVHQTSSPNI 408 + S +N NST N S+ GGG S+ GG +S+ A + + + HQ SSP + Sbjct: 275 NNSNNNNQGNSTPNSSSS----GGG------SQAGGHLSAAAAAAALNVTAAHQNSSPLL 324 Query: 409 ---ASSSGPNFHACIHENMKNQIGKS 477 A+S P C E++ G S Sbjct: 325 PTPATSVSPVSIVCKKEHLSGGYGSS 350
>ULP2_YEAST (P40537) Ubiquitin-like-specific protease 2 (EC 3.4.22.-)| Length = 1034 Score = 30.8 bits (68), Expect = 3.8 Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 9/106 (8%) Frame = +1 Query: 187 HNILFPLSP-----VDSQKIAEVSQSIKSNMTNSTENVGSTEFGPGGGDLVVLA----SR 339 H+I+ P SP S+KI ++S ++S T+S E S P ++V+ SR Sbjct: 856 HDIMMP-SPKPKRIYPSKKIPQLSSHVQSLSTDSMERQSS----PNNTNIVISDTEQDSR 910 Query: 340 CGGFVSSGATSMVSVHQTSSPNIASSSGPNFHACIHENMKNQIGKS 477 G S TS + S N+ SS PN H+N + G + Sbjct: 911 LGVNSESKNTSGIVNRDDSDVNLIGSSLPNVAEKNHDNTQESNGNN 956
>NLAL1_ARATH (Q8VZT0) Putative H/ACA ribonucleoprotein complex subunit 1-like| protein 1 Length = 202 Score = 30.8 bits (68), Expect = 3.8 Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 8/71 (11%) Frame = +1 Query: 286 GSTEFGPGGGDLVVLASRCGGFVSSGATSMV-----SVHQTSSPNIASSSG---PNFHAC 441 G FG GGG R GGF G S V VH + S P+F+A Sbjct: 28 GGGRFGGGGGRFGGGGGRFGGFRDEGPPSEVVEVATFVHACEGDAVTKLSQEKIPHFNAP 87 Query: 442 IHENMKNQIGK 474 I+ K QIGK Sbjct: 88 IYLENKTQIGK 98
>OMPB_RICTY (P96989) Outer membrane protein B precursor (168 kDa surface-layer| protein) (Surface protein antigen) (Cell surface antigen 5) (Sca5) (rOmpB) (rOmp B) [Contains: 120 kDa surface-exposed protein (Surface protein antigen) (120 kDa outer membrane Length = 1645 Score = 30.8 bits (68), Expect = 3.8 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%) Frame = +1 Query: 163 VSSHHLPLHNILFPLSPVDSQKIAEVSQSIK---SNMTNSTENVGSTEFGPGGGDLV 324 + S PL NI F + I + + + +N+T + NVGS F GG +V Sbjct: 696 LGSAESPLSNIHFATKAANGDSILHIGKGVNLYANNITTTDANVGSLHFRSGGTSIV 752
>ICAM1_MOUSE (P13597) Intercellular adhesion molecule 1 precursor (ICAM-1)| (MALA-2) Length = 537 Score = 30.4 bits (67), Expect = 5.0 Identities = 13/46 (28%), Positives = 23/46 (50%) Frame = -3 Query: 623 CYHGEVPVESGGTRLPTVVSFPNTSSARSSP*WPRIYPSLLIQCNI 486 C+ V+S + TV SFP + R P W ++ L ++C++ Sbjct: 91 CFENCGTVQSSASATITVYSFPESVELRPLPAWQQVGKDLTLRCHV 136
>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 30.4 bits (67), Expect = 5.0 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = +1 Query: 211 PVDS--QKIAEVSQSIKSNMTNSTENVGSTEFGPGGGDLVVLASRCGGFVSSGATSMVSV 384 P D+ + A ++ + ++ NS N +T P LVV AS+CG + G + + + Sbjct: 64 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123 Query: 385 HQTSSPNI 408 +++ + Sbjct: 124 RESTGAQV 131
>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 30.4 bits (67), Expect = 5.0 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = +1 Query: 211 PVDS--QKIAEVSQSIKSNMTNSTENVGSTEFGPGGGDLVVLASRCGGFVSSGATSMVSV 384 P D+ + A ++ + ++ NS N +T P LVV AS+CG + G + + + Sbjct: 64 PTDAIFKAFAMIAYKFEEDIINSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEI 123 Query: 385 HQTSSPNI 408 +++ + Sbjct: 124 RESTGAQV 131
>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative| heterogeneous nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP) Length = 362 Score = 30.0 bits (66), Expect = 6.6 Identities = 17/60 (28%), Positives = 30/60 (50%) Frame = +1 Query: 229 IAEVSQSIKSNMTNSTENVGSTEFGPGGGDLVVLASRCGGFVSSGATSMVSVHQTSSPNI 408 I ++ + I S+MTNST + P LVV AS+CG + G + + +++ + Sbjct: 76 IDKLEEDISSSMTNST----AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
>CASR_RAT (P48442) Extracellular calcium-sensing receptor precursor (CaSR)| (Parathyroid Cell calcium-sensing receptor) Length = 1079 Score = 30.0 bits (66), Expect = 6.6 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 3/96 (3%) Frame = +1 Query: 103 PNKYTIAHKESSTKIG*EPQVSSHHLPLHNILFPLSPVDSQKIAEVSQS-IKSNMT--NS 273 P K +AH+ S + E Q S+ L H L PL D+ + ++ ++ M + Sbjct: 983 PQKNAMAHRNSMRQNSLEAQRSNDTLGRHQALLPLQCADADSEMTIQETGLQGPMVGDHQ 1042 Query: 274 TENVGSTEFGPGGGDLVVLASRCGGFVSSGATSMVS 381 E S E P LV+ SR FV SG S V+ Sbjct: 1043 PEMESSDEMSPA---LVMSTSR--SFVISGGGSSVT 1073
>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)| Length = 365 Score = 30.0 bits (66), Expect = 6.6 Identities = 17/60 (28%), Positives = 30/60 (50%) Frame = +1 Query: 229 IAEVSQSIKSNMTNSTENVGSTEFGPGGGDLVVLASRCGGFVSSGATSMVSVHQTSSPNI 408 I ++ + I S+MTNST + P LVV AS+CG + G + + +++ + Sbjct: 76 IDKLEEDISSSMTNST----AASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQV 131
>OMPB_RICRI (Q53047) Outer membrane protein B precursor (168 kDa surface-layer| protein) (Surface protein antigen) (Cell surface antigen 5) (Sca5) (rOmpB) (rOmp B) [Contains: 120 kDa surface-exposed protein (Surface protein antigen) (120 kDa outer membrane Length = 1654 Score = 30.0 bits (66), Expect = 6.6 Identities = 26/103 (25%), Positives = 44/103 (42%), Gaps = 3/103 (2%) Frame = +1 Query: 181 PLHNILFPLSPVDSQKIAEVSQSIK---SNMTNSTENVGSTEFGPGGGDLVVLASRCGGF 351 PL I F V+ + V + + +N+T + NVGS F GG ++V S G Sbjct: 700 PLAEINFGSKGVNVDTVLNVGEGVNLYATNITTTDANVGSFVFNAGGTNIV---SGTVGG 756 Query: 352 VSSGATSMVSVHQTSSPNIASSSGPNFHACIHENMKNQIGKSY 480 + V++ ++ ++ N + I N QIG +Y Sbjct: 757 QQGNKFNTVALENGTTVKFLGNATFNGNTTIAANSTLQIGGNY 799
>SAMD4_HUMAN (Q9UPU9) Sterile alpha motif domain-containing protein 4| Length = 529 Score = 30.0 bits (66), Expect = 6.6 Identities = 14/40 (35%), Positives = 23/40 (57%) Frame = -3 Query: 644 WVIHSAGCYHGEVPVESGGTRLPTVVSFPNTSSARSSP*W 525 W S GC +G VP+ S + +PT ++ TS++ + P W Sbjct: 104 WQDKSMGCENGHVPLYSSSS-VPTTINTIGTSTSTNVPAW 142 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 103,625,382 Number of Sequences: 219361 Number of extensions: 2287877 Number of successful extensions: 6719 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 6341 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6713 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6484657212 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
