ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34n11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|CT573052.2| Medicago truncatula chromosome 5 clone mth2-60f2... 48 0.038
2emb|CT027664.2| Medicago truncatula chromosome 5 clone mth2-160e... 48 0.038
3emb|AL935055.8| Mouse DNA sequence from clone RP23-131J21 on chr... 48 0.038
4emb|CR361555.8| Zebrafish DNA sequence from clone CH211-215D20 i... 46 0.15
5emb|BX957310.7| Zebrafish DNA sequence from clone DKEY-164P6 in ... 46 0.15
6emb|AL929077.19| Zebrafish DNA sequence from clone CH211-129K19 ... 46 0.15
7emb|BX255944.7| Zebrafish DNA sequence from clone CH211-241L20, ... 46 0.15
8emb|BX322597.3| Zebrafish DNA sequence from clone RP71-7L19 in l... 46 0.15
9emb|BX545855.16| Zebrafish DNA sequence from clone CH211-212N6 i... 46 0.15
10ref|NM_025218.2| Homo sapiens UL16 binding protein 1 (ULBP1), mRNA 42 2.3
11gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosom... 42 2.3
12gb|AF346595.1| Homo sapiens NKG2D ligand 1 (N2DL1) mRNA, partial... 42 2.3
13gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, com... 42 2.3
14emb|AL355497.14| Human DNA sequence from clone RP11-472G23 on ch... 42 2.3
15gb|AF425265.1| Homo sapiens UL16 binding protein 1 (ULBP1) mRNA,... 42 2.3
16gb|BC035416.1| Homo sapiens UL16 binding protein 1, mRNA (cDNA c... 42 2.3
17gb|AC103816.2| Homo sapiens chromosome 8, clone CTC-497K19, comp... 42 2.3
18gb|AF346416.1| Homo sapiens retinoic acid early transcript 1 (RA... 42 2.3
19gb|DP000004.1| Lemur catta target 1 genomic scaffold 42 2.3
20gb|AF304377.1|AF304377 Homo sapiens ULBP1 protein mRNA, complete... 42 2.3
21gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold 42 2.3
22gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence 42 2.3
23dbj|AP004920.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 2.3
24emb|AL831733.4| Mouse DNA sequence from clone RP23-109O11 on chr... 42 2.3
25dbj|AB052907.1| Homo sapiens mRNA for ALCAN-beta, complete cds 42 2.3
26ref|NM_121022.2| Arabidopsis thaliana unknown protein AT5G09850 ... 40 9.2
27gb|AC150544.3| Bos taurus BAC CH240-75C8 (Children's Hospital O... 40 9.2
28gb|AC137980.4| Mus musculus BAC clone RP24-69K24 from chromosome... 40 9.2
29gb|AY812125.1| Schistosoma japonicum SJCHGC01182 protein mRNA, p... 40 9.2
30gb|AC160864.9| Mus musculus 10 BAC RP23-425N2 (Roswell Park Canc... 40 9.2
31gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, co... 40 9.2
32gb|AC115741.9| Mus musculus chromosome 14, clone RP23-476L2, com... 40 9.2
33gb|AC121915.2| Mus musculus BAC clone RP24-190P20 from 5, comple... 40 9.2
34gb|AC115970.8| Mus musculus chromosome 10, clone RP24-77I13, com... 40 9.2
35emb|AL592153.6| Human DNA sequence from clone RP11-58K1 on chrom... 40 9.2
36emb|AL590423.14| Human DNA sequence from clone RP13-364K23 on ch... 40 9.2
37emb|AL354871.12| Human DNA sequence from clone RP11-66G15 on chr... 40 9.2
38emb|AL109940.18|HSJ421D16 Human DNA sequence from clone RP3-421D... 40 9.2
39gb|AC090363.16| Homo sapiens chromosome 18, clone RP11-885J19, c... 40 9.2
40emb|AL645792.7| Zebrafish DNA sequence from clone RP71-1D10 in l... 40 9.2
41emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, stra... 40 9.2
42emb|BX321856.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 9.2
43gb|AC159325.13| Mus musculus 10 BAC RP23-382A21 (Roswell Park Ca... 40 9.2
44gb|AC084855.4| Homo sapiens chromosome 15, clone CTD-3076O17, co... 40 9.2
45gb|AC154602.3| Mus musculus BAC clone RP23-343M11 from chromosom... 40 9.2
46gb|AC103814.2| Homo sapiens chromosome 18, clone CTD-3111I19, co... 40 9.2
47gb|AC090825.5| Homo sapiens chromosome 15, clone CTD-2054N24, co... 40 9.2
48gb|AC106816.3| Homo sapiens chromosome 5 clone RP11-632F2, compl... 40 9.2
49emb|BX569796.6| Zebrafish DNA sequence from clone CH211-106K21 i... 40 9.2
50gb|AC114958.2| Homo sapiens chromosome 5 clone RP11-167O18, comp... 40 9.2
51gb|AC005184.1| Homo sapiens Xp22 bins 45-47 BAC GSHB-665N22 (Gen... 40 9.2
52gb|AY058141.1| Arabidopsis thaliana AT5g09850/MYH9_6 mRNA, compl... 40 9.2
53emb|BX248233.7| Zebrafish DNA sequence from clone CH211-125N11 i... 40 9.2
54dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
55emb|BX830794.1|CNS0A1KP Arabidopsis thaliana Full-length cDNA Co... 40 9.2
56gb|AC154458.2| Mus musculus BAC clone RP24-162I9 from chromosome... 40 9.2
57gb|AC010663.6| Drosophila melanogaster 3L BAC RP98-17M18 (Roswel... 40 9.2
58gb|AC020655.10| Homo sapiens 3 BAC RP11-15B4 (Roswell Park Cance... 40 9.2
59emb|BX548006.10| Zebrafish DNA sequence from clone DKEY-127P11, ... 40 9.2
60dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic D... 40 9.2
61emb|AL928693.9| Mouse DNA sequence from clone RP23-407K8 on chro... 40 9.2
62dbj|AB016893.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 40 9.2
63emb|BX927116.18| Zebrafish DNA sequence from clone DKEY-261D11 i... 40 9.2
64emb|BX936416.11| Zebrafish DNA sequence from clone CH211-194I16 ... 40 9.2
65emb|BX571976.11| Zebrafish DNA sequence from clone DKEY-174I19 i... 40 9.2
66emb|AL929274.7| Zebrafish DNA sequence from clone CH211-79M20 in... 40 9.2
67gb|AE003599.2| Drosophila melanogaster chromosome 3L, section 80... 40 9.2
68dbj|AP000770.4| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.2
69gb|AC132471.4| Mus musculus BAC clone RP23-106E17 from 10, compl... 40 9.2
70emb|AL611969.15| Mouse DNA sequence from clone RP23-392K10 on ch... 40 9.2
71emb|AL160052.21| Human DNA sequence from clone RP11-531C18 on ch... 40 9.2
72emb|AL671976.6| Mouse DNA sequence from clone RP23-320H14 on chr... 40 9.2
73gb|AC170595.2| Mus musculus BAC clone RP23-444B8 from chromosome... 40 9.2
74emb|AL772290.3| Mouse DNA sequence from clone RP23-66O4 on chrom... 40 9.2 
>emb|CT573052.2| Medicago truncatula chromosome 5 clone mth2-60f21, COMPLETE SEQUENCE
          Length = 131869

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                     
Query: 30    acaaggacaaataaaataatttta 53
             ||||||||||||||||||||||||
Sbjct: 20167 acaaggacaaataaaataatttta 20144
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>emb|CT027664.2| Medicago truncatula chromosome 5 clone mth2-160e5, COMPLETE SEQUENCE
          Length = 146823

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 30   acaaggacaaataaaataatttta 53
            ||||||||||||||||||||||||
Sbjct: 2048 acaaggacaaataaaataatttta 2071
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>emb|AL935055.8| Mouse DNA sequence from clone RP23-131J21 on chromosome 2, complete
             sequence
          Length = 210691

 Score = 48.1 bits (24), Expect = 0.038
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 494   actggattaagagagaggggtaaa 517
             ||||||||||||||||||||||||
Sbjct: 39764 actggattaagagagaggggtaaa 39787
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>emb|CR361555.8| Zebrafish DNA sequence from clone CH211-215D20 in linkage group 11,
              complete sequence
          Length = 202951

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 36     acaaataaaataattttacatgt 58
              |||||||||||||||||||||||
Sbjct: 190691 acaaataaaataattttacatgt 190713



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 36     acaaataaaataattttacatgt 58
              |||||||||||||||||||||||
Sbjct: 182512 acaaataaaataattttacatgt 182534
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>emb|BX957310.7| Zebrafish DNA sequence from clone DKEY-164P6 in linkage group 17,
            complete sequence
          Length = 14524

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                   
Query: 36   acaaataaaataattttacatgt 58
            |||||||||||||||||||||||
Sbjct: 8040 acaaataaaataattttacatgt 8062
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>emb|AL929077.19| Zebrafish DNA sequence from clone CH211-129K19 in linkage group 15,
             complete sequence
          Length = 167866

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 36    acaaataaaataattttacatgt 58
             |||||||||||||||||||||||
Sbjct: 13194 acaaataaaataattttacatgt 13172



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 36   acaaataaaataattttacatgt 58
            |||||||||||||||||||||||
Sbjct: 4490 acaaataaaataattttacatgt 4468
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>emb|BX255944.7| Zebrafish DNA sequence from clone CH211-241L20, complete sequence
          Length = 169165

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 36     acaaataaaataattttacatgt 58
              |||||||||||||||||||||||
Sbjct: 164951 acaaataaaataattttacatgt 164929
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>emb|BX322597.3| Zebrafish DNA sequence from clone RP71-7L19 in linkage group 4,
             complete sequence
          Length = 173945

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 36    acaaataaaataattttacatgt 58
             |||||||||||||||||||||||
Sbjct: 62699 acaaataaaataattttacatgt 62677
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>emb|BX545855.16| Zebrafish DNA sequence from clone CH211-212N6 in linkage group 9,
             complete sequence
          Length = 204962

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 36    acaaataaaataattttacatgt 58
             |||||||||||||||||||||||
Sbjct: 74233 acaaataaaataattttacatgt 74211



 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 36    acaaataaaataattttacatgt 58
             |||||||||||||||||||||||
Sbjct: 69591 acaaataaaataattttacatgt 69569
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>ref|NM_025218.2| Homo sapiens UL16 binding protein 1 (ULBP1), mRNA
          Length = 3160

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 167 cttctcatcatcttcctctgc 187
           |||||||||||||||||||||
Sbjct: 737 cttctcatcatcttcctctgc 757
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>gb|AC129326.3| Mus musculus BAC clone RP23-326H12 from chromosome 19, complete
             sequence
          Length = 184128

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 150   atgagaaccacaagtttcttc 170
             |||||||||||||||||||||
Sbjct: 85294 atgagaaccacaagtttcttc 85274
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>gb|AF346595.1| Homo sapiens NKG2D ligand 1 (N2DL1) mRNA, partial cds
          Length = 705

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 167 cttctcatcatcttcctctgc 187
           |||||||||||||||||||||
Sbjct: 664 cttctcatcatcttcctctgc 684
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>gb|AC116451.7| Mus musculus chromosome 19, clone RP24-273P9, complete sequence
          Length = 218079

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 150    atgagaaccacaagtttcttc 170
              |||||||||||||||||||||
Sbjct: 184501 atgagaaccacaagtttcttc 184481
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>emb|AL355497.14| Human DNA sequence from clone RP11-472G23 on chromosome 6 Contains the
             ULBP1 gene for UL16 binding protein 1, a basic
             transcription factor 3 (BTF3) pseudogene, a pseudogene
             similar to UL16 binding protein 1 (ULBP1), two retinoic
             acid early transcript 1 (RAET1L) pseudogenes, the gene for
             retinoic acid early transcript 1 (RAET1L), a prohibitin
             (PHB) pseudogene, the ULBP3 gene for UL16 binding protein
             3, the 5' end of the PPP1R14C gene for PPP1R14C gene for
             protein phosphatase 1 regulatory (inhibitor) subunit 14C
             (KEPI NY-BR-81 CPI17-like), a novel gene and eight CpG
             islands, complete sequence
          Length = 215397

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 167   cttctcatcatcttcctctgc 187
             |||||||||||||||||||||
Sbjct: 16198 cttctcatcatcttcctctgc 16218
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>gb|AF425265.1| Homo sapiens UL16 binding protein 1 (ULBP1) mRNA, partial cds
          Length = 1449

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 167 cttctcatcatcttcctctgc 187
           |||||||||||||||||||||
Sbjct: 681 cttctcatcatcttcctctgc 701
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>gb|BC035416.1| Homo sapiens UL16 binding protein 1, mRNA (cDNA clone MGC:41778
           IMAGE:4822311), complete cds
          Length = 3160

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 167 cttctcatcatcttcctctgc 187
           |||||||||||||||||||||
Sbjct: 737 cttctcatcatcttcctctgc 757
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>gb|AC103816.2| Homo sapiens chromosome 8, clone CTC-497K19, complete sequence
          Length = 161827

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 26     cctaacaaggacaaataaaat 46
              |||||||||||||||||||||
Sbjct: 132931 cctaacaaggacaaataaaat 132911
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>gb|AF346416.1| Homo sapiens retinoic acid early transcript 1 (RAET1I) mRNA,
           complete cds
          Length = 735

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 167 cttctcatcatcttcctctgc 187
           |||||||||||||||||||||
Sbjct: 694 cttctcatcatcttcctctgc 714
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>gb|DP000004.1| Lemur catta target 1 genomic scaffold
          Length = 1399362

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 49     ttttacatgtgcacaacagaatact 73
              ||||| |||||||||||||||||||
Sbjct: 279573 ttttatatgtgcacaacagaatact 279549
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>gb|AF304377.1|AF304377 Homo sapiens ULBP1 protein mRNA, complete cds
          Length = 735

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 167 cttctcatcatcttcctctgc 187
           |||||||||||||||||||||
Sbjct: 694 cttctcatcatcttcctctgc 714
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>gb|DP000024.1| Eulemur macaco macaco target 1 genomic scaffold
          Length = 1570569

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 49     ttttacatgtgcacaacagaatact 73
              ||||| |||||||||||||||||||
Sbjct: 309020 ttttatatgtgcacaacagaatact 308996
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>gb|AC123970.3| Lemur catta clone LB2-159J16, complete sequence
          Length = 183268

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 49    ttttacatgtgcacaacagaatact 73
             ||||| |||||||||||||||||||
Sbjct: 13622 ttttatatgtgcacaacagaatact 13598
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>dbj|AP004920.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT13I21, TM0076c,
             complete sequence
          Length = 67145

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 163   gtttcttctcatcatcttcctctgc 187
             |||||||||| ||||||||||||||
Sbjct: 57639 gtttcttctcctcatcttcctctgc 57663
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>emb|AL831733.4| Mouse DNA sequence from clone RP23-109O11 on chromosome 4, complete
             sequence
          Length = 196863

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 428   acttccatgcatgcatacatg 448
             |||||||||||||||||||||
Sbjct: 74597 acttccatgcatgcatacatg 74617
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>dbj|AB052907.1| Homo sapiens mRNA for ALCAN-beta, complete cds
          Length = 735

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 167 cttctcatcatcttcctctgc 187
           |||||||||||||||||||||
Sbjct: 694 cttctcatcatcttcctctgc 714
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>ref|NM_121022.2| Arabidopsis thaliana unknown protein AT5G09850 mRNA, complete cds
          Length = 1967

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 456 gaagaatcagattggtaaat 475
           ||||||||||||||||||||
Sbjct: 451 gaagaatcagattggtaaat 432
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>gb|AC150544.3| Bos taurus  BAC CH240-75C8 (Children's Hospital Oakland Research
             Institute Bovine BAC Library (male)) complete sequence
          Length = 190186

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 222   tcaaaagatagctgaagtga 241
             ||||||||||||||||||||
Sbjct: 90198 tcaaaagatagctgaagtga 90179
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>gb|AC137980.4| Mus musculus BAC clone RP24-69K24 from chromosome 9, complete sequence
          Length = 221263

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 429    cttccatgcatgcatacatg 448
              ||||||||||||||||||||
Sbjct: 180206 cttccatgcatgcatacatg 180187
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>gb|AY812125.1| Schistosoma japonicum SJCHGC01182 protein mRNA, partial cds
          Length = 2027

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   acaaataaaataattttaca 55
            ||||||||||||||||||||
Sbjct: 1980 acaaataaaataattttaca 1999
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>gb|AC160864.9| Mus musculus 10 BAC RP23-425N2 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 190336

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aaggacaaataaaataattt 51
             ||||||||||||||||||||
Sbjct: 62505 aaggacaaataaaataattt 62524
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>gb|AC137108.12| Mus musculus chromosome 9, clone RP23-277J20, complete sequence
          Length = 204108

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 38     aaataaaataattttacatgtgca 61
              |||||||||||||||| |||||||
Sbjct: 153787 aaataaaataattttaaatgtgca 153810
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>gb|AC115741.9| Mus musculus chromosome 14, clone RP23-476L2, complete sequence
          Length = 188141

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 508    gaggggtaaatccttggcca 527
              ||||||||||||||||||||
Sbjct: 170724 gaggggtaaatccttggcca 170705
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>gb|AC121915.2| Mus musculus BAC clone RP24-190P20 from 5, complete sequence
          Length = 164008

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    aacaaggacaaataaaataa 48
             ||||||||||||||||||||
Sbjct: 97838 aacaaggacaaataaaataa 97857
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>gb|AC115970.8| Mus musculus chromosome 10, clone RP24-77I13, complete sequence
          Length = 170563

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     aaggacaaataaaataattt 51
              ||||||||||||||||||||
Sbjct: 159014 aaggacaaataaaataattt 159033
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>emb|AL592153.6| Human DNA sequence from clone RP11-58K1 on chromosome 9 Contains the 3'
             end of the C9orf93 gene for chromosome 9 open reading
             frame 93, complete sequence
          Length = 160425

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    acaaataaaataattttaca 55
             ||||||||||||||||||||
Sbjct: 39193 acaaataaaataattttaca 39174
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>emb|AL590423.14| Human DNA sequence from clone RP13-364K23 on chromosome Xq22.1-23
            Contains the DSIPI gene for delta sleep inducing peptide,
            immunoreactor (DIP, GILZ, TSC-22R), the 5' end of a novel
            gene and two CpG islands, complete sequence
          Length = 83167

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 164  tttcttctcatcatcttcct 183
            ||||||||||||||||||||
Sbjct: 8593 tttcttctcatcatcttcct 8574
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>emb|AL354871.12| Human DNA sequence from clone RP11-66G15 on chromosome 13, complete
             sequence
          Length = 96159

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 495   ctggattaagagagaggggtaaat 518
             |||||||||||||||||| |||||
Sbjct: 70611 ctggattaagagagagggttaaat 70634
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>emb|AL109940.18|HSJ421D16 Human DNA sequence from clone RP3-421D16 on chromosome 6q26-27 Contains
             part of the gene for smooth muscle cell associated protein
             2 (SMAP2) or secreted modular calcium binding protein 2
             (SMOC2) and two CpG islands, complete sequence
          Length = 110603

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   gtttcttctcatcatcttcc 182
             ||||||||||||||||||||
Sbjct: 45074 gtttcttctcatcatcttcc 45093
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>gb|AC090363.16| Homo sapiens chromosome 18, clone RP11-885J19, complete sequence
          Length = 152200

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aaataaaataattttacatg 57
             ||||||||||||||||||||
Sbjct: 19753 aaataaaataattttacatg 19734
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>emb|AL645792.7| Zebrafish DNA sequence from clone RP71-1D10 in linkage group 14
             Contains two novel genes similar to MATR3 (matrin 3), a
             novel gene similar to PDE6A (cGMP-specific
             phosphodiesterase 6A alpha (rod)), a novel gene similar to
             PERC (PGC-1-related estrogen receptor alpha coactivator)
             and two CpG islands, complete sequence
          Length = 170221

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    aacaaggacaaataaaataa 48
             ||||||||||||||||||||
Sbjct: 53099 aacaaggacaaataaaataa 53118
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>emb|BX842650.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 5/11
          Length = 349723

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 364    gcaacatcaatggtttccgt 383
              ||||||||||||||||||||
Sbjct: 136761 gcaacatcaatggtttccgt 136742
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>emb|BX321856.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 1/10
          Length = 302050

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 599    ccactggaacctcaccatga 618
              ||||||||||||||||||||
Sbjct: 186261 ccactggaacctcaccatga 186242
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>gb|AC159325.13| Mus musculus 10 BAC RP23-382A21 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 201815

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 428    acttccatgcatgcatacat 447
              ||||||||||||||||||||
Sbjct: 127292 acttccatgcatgcatacat 127273
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>gb|AC084855.4| Homo sapiens chromosome 15, clone CTD-3076O17, complete sequence
          Length = 180944

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 495   ctggattaagagagaggggtaaat 518
             |||||||||||||||||| |||||
Sbjct: 22144 ctggattaagagagagggttaaat 22121
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>gb|AC154602.3| Mus musculus BAC clone RP23-343M11 from chromosome 17, complete
             sequence
          Length = 196564

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   cacaagtttcttctcatcat 177
             ||||||||||||||||||||
Sbjct: 28324 cacaagtttcttctcatcat 28343
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>gb|AC103814.2| Homo sapiens chromosome 18, clone CTD-3111I19, complete sequence
          Length = 172461

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aaataaaataattttacatg 57
             ||||||||||||||||||||
Sbjct: 55260 aaataaaataattttacatg 55241
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>gb|AC090825.5| Homo sapiens chromosome 15, clone CTD-2054N24, complete sequence
          Length = 170507

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 495    ctggattaagagagaggggtaaat 518
              |||||||||||||||||| |||||
Sbjct: 159565 ctggattaagagagagggttaaat 159542
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>gb|AC106816.3| Homo sapiens chromosome 5 clone RP11-632F2, complete sequence
          Length = 54807

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 447   tgagaacatgaagaatcaga 466
             ||||||||||||||||||||
Sbjct: 29999 tgagaacatgaagaatcaga 30018
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>emb|BX569796.6| Zebrafish DNA sequence from clone CH211-106K21 in linkage group 2,
             complete sequence
          Length = 109947

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    aaataaaataattttacatg 57
             ||||||||||||||||||||
Sbjct: 85074 aaataaaataattttacatg 85055
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>gb|AC114958.2| Homo sapiens chromosome 5 clone RP11-167O18, complete sequence
          Length = 79173

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 447   tgagaacatgaagaatcaga 466
             ||||||||||||||||||||
Sbjct: 54614 tgagaacatgaagaatcaga 54633
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>gb|AC005184.1| Homo sapiens Xp22 bins 45-47 BAC GSHB-665N22 (Genome Systems Human BAC
             Library) complete sequence
          Length = 157981

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 93    agaaaaaggacccaacaagt 112
             ||||||||||||||||||||
Sbjct: 43396 agaaaaaggacccaacaagt 43377
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>gb|AY058141.1| Arabidopsis thaliana AT5g09850/MYH9_6 mRNA, complete cds
          Length = 1960

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 456 gaagaatcagattggtaaat 475
           ||||||||||||||||||||
Sbjct: 454 gaagaatcagattggtaaat 435
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>emb|BX248233.7| Zebrafish DNA sequence from clone CH211-125N11 in linkage group 10,
              complete sequence
          Length = 157428

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 433    catgcatgcatacatgagaacatg 456
              ||||||||||| ||||||||||||
Sbjct: 138449 catgcatgcatgcatgagaacatg 138426
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 171      tcatcatcttcctctgcacaatat 194
                ||||||||||||| ||||||||||
Sbjct: 19446951 tcatcatcttcctttgcacaatat 19446928
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>emb|BX830794.1|CNS0A1KP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTLS24ZA09 of Adult vegetative tissue of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1852

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 456 gaagaatcagattggtaaat 475
           ||||||||||||||||||||
Sbjct: 386 gaagaatcagattggtaaat 367
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>gb|AC154458.2| Mus musculus BAC clone RP24-162I9 from chromosome 17, complete sequence
          Length = 183027

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 158    cacaagtttcttctcatcat 177
              ||||||||||||||||||||
Sbjct: 159115 cacaagtttcttctcatcat 159134
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>gb|AC010663.6| Drosophila melanogaster 3L BAC RP98-17M18 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 193914

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 40    ataaaataattttacatgtg 59
             ||||||||||||||||||||
Sbjct: 72601 ataaaataattttacatgtg 72582
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>gb|AC020655.10| Homo sapiens 3 BAC RP11-15B4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 145820

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 215   tggattctcaaaagatagctgaag 238
             ||||||||||| ||||||||||||
Sbjct: 74065 tggattctcaagagatagctgaag 74042
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>emb|BX548006.10| Zebrafish DNA sequence from clone DKEY-127P11, complete sequence
          Length = 158134

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   cttctcatcatcttcctctg 186
             ||||||||||||||||||||
Sbjct: 25473 cttctcatcatcttcctctg 25492
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>dbj|AP004749.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0410C01
          Length = 138424

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 171   tcatcatcttcctctgcacaatat 194
             ||||||||||||| ||||||||||
Sbjct: 65360 tcatcatcttcctttgcacaatat 65337
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>emb|AL928693.9| Mouse DNA sequence from clone RP23-407K8 on chromosome 2, complete
             sequence
          Length = 206478

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 32/35 (91%), Gaps = 2/35 (5%)
 Strand = Plus / Minus

                                                
Query: 39    aataaaataattttacatgtgca--caacagaata 71
             ||||||||||||||| |||||||  ||||||||||
Sbjct: 42970 aataaaataattttagatgtgcattcaacagaata 42936
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>dbj|AB016893.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MYH9
          Length = 82390

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 456   gaagaatcagattggtaaat 475
             ||||||||||||||||||||
Sbjct: 18203 gaagaatcagattggtaaat 18222
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>emb|BX927116.18| Zebrafish DNA sequence from clone DKEY-261D11 in linkage group 22,
             complete sequence
          Length = 155808

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   cttctcatcatcttcctctg 186
             ||||||||||||||||||||
Sbjct: 92555 cttctcatcatcttcctctg 92574
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>emb|BX936416.11| Zebrafish DNA sequence from clone CH211-194I16 in linkage group 18,
             complete sequence
          Length = 214763

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 39    aataaaataattttacatgt 58
             ||||||||||||||||||||
Sbjct: 46535 aataaaataattttacatgt 46516
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>emb|BX571976.11| Zebrafish DNA sequence from clone DKEY-174I19 in linkage group 18,
             complete sequence
          Length = 183462

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 476   catattaatggatattacac 495
             ||||||||||||||||||||
Sbjct: 51771 catattaatggatattacac 51752
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>emb|AL929274.7| Zebrafish DNA sequence from clone CH211-79M20 in linkage group 22,
             complete sequence
          Length = 169459

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 167   cttctcatcatcttcctctg 186
             ||||||||||||||||||||
Sbjct: 56326 cttctcatcatcttcctctg 56345
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>gb|AE003599.2| Drosophila melanogaster chromosome 3L, section 80 of 83 of the complete
              sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 40     ataaaataattttacatgtg 59
              ||||||||||||||||||||
Sbjct: 242550 ataaaataattttacatgtg 242531
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>dbj|AP000770.4| Homo sapiens genomic DNA, chromosome 11q, clone:CMB9-27A20, complete
             sequence
          Length = 124057

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 562   aaggagacgacagtcggaagccttgtac 589
             ||||||| |||||| |||||||||||||
Sbjct: 85865 aaggagaagacagttggaagccttgtac 85892
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>gb|AC132471.4| Mus musculus BAC clone RP23-106E17 from 10, complete sequence
          Length = 197822

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     catgtgcacaacagaatact 73
              ||||||||||||||||||||
Sbjct: 135024 catgtgcacaacagaatact 135043
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>emb|AL611969.15| Mouse DNA sequence from clone RP23-392K10 on chromosome 4, complete
            sequence
          Length = 174305

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 36   acaaataaaataattttaca 55
            ||||||||||||||||||||
Sbjct: 7010 acaaataaaataattttaca 7029
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>emb|AL160052.21| Human DNA sequence from clone RP11-531C18 on chromosome 9, complete
             sequence
          Length = 149868

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 36    acaaataaaataattttaca 55
             ||||||||||||||||||||
Sbjct: 80744 acaaataaaataattttaca 80725
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>emb|AL671976.6| Mouse DNA sequence from clone RP23-320H14 on chromosome X, complete
              sequence
          Length = 190996

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 33     aggacaaataaaataatttt 52
              ||||||||||||||||||||
Sbjct: 177104 aggacaaataaaataatttt 177085
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>gb|AC170595.2| Mus musculus BAC clone RP23-444B8 from chromosome 14, complete sequence
          Length = 195329

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 508   gaggggtaaatccttggcca 527
             ||||||||||||||||||||
Sbjct: 55311 gaggggtaaatccttggcca 55292
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>emb|AL772290.3| Mouse DNA sequence from clone RP23-66O4 on chromosome 4, complete
             sequence
          Length = 110623

 Score = 40.1 bits (20), Expect = 9.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 51    ttacatgtgcacaacagaat 70
             ||||||||||||||||||||
Sbjct: 85625 ttacatgtgcacaacagaat 85606


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,825,090
Number of Sequences: 3902068
Number of extensions: 6825090
Number of successful extensions: 159385
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 159128
Number of HSP's gapped (non-prelim): 258
length of query: 670
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 647
effective length of database: 17,143,297,704
effective search space: 11091713614488
effective search space used: 11091713614488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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