| Clone Name | rbaal34n06 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102207.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087H03, full insert sequence Length = 1120 Score = 319 bits (161), Expect = 6e-84 Identities = 329/385 (85%) Strand = Plus / Minus Query: 267 aggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatacgtgtag 326 |||||||| | |||||||||||| || || |||||||||| |||||||| || |||||| Sbjct: 887 aggttgatcacgtcgaggtagagcgagacagcagcccagacatactcatcgtaagtgtag 828 Query: 327 cgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaagatgatcgacgccacg 386 ||||||||||| |||||||||||| |||||||||| ||| |||||| || ||| |||| Sbjct: 827 cgcttgatgatattgtccgtgtcgtagatgatgtatccagagaagacgagcgatgccagt 768 Query: 387 gccccatagatcatgacggagatcttgcccagtgggaaaaagatctggataagtgagaac 446 | ||||| ||||| | ||||||||||||| |||||| || |||||||| ||||| || Sbjct: 767 ccgccatatatcatttcagagatcttgcccaatgggaagaatatctggatcagtgaaaat 708 Query: 447 atcatcagcaccataagagctccaaacaggaaggggccaaggaagttgaagtcatggcct 506 | ||||||||||| | ||| ||||||||||||||| ||||| ||||||||||||||| Sbjct: 707 aaaatcagcaccatcacagcagaaaacaggaaggggccgaggaaattgaagtcatggcct 648 Query: 507 ctctttgcagcccagaaagtgtaggcagtcaagctgatcaccaccactgctgtcagaatt 566 ||||||||||||||||||||||| || |||||||||||||||||||||||||| ||| | Sbjct: 647 ctctttgcagcccagaaagtgtatgctgtcaagctgatcaccaccactgctgtgagagct 588 Query: 567 gcagcttccaagatgatttttccgctggtgaaggcgcacgtcatgccgacggcgaagctg 626 || || || || |||| ||||||||||||| |||| || ||||||||||||||||||||| Sbjct: 587 gccgcctcaaaaatgacttttccgctggtgtaggcacatgtcatgccgacggcgaagctg 528 Query: 627 atggagacggtgaagatgccgagca 651 |||| || ||||||| |||||||| Sbjct: 527 atggcaaccgtgaagaggccgagca 503
>gb|AY112478.1| Zea mays CL3582_1 mRNA sequence Length = 1032 Score = 287 bits (145), Expect = 2e-74 Identities = 357/431 (82%) Strand = Plus / Plus Query: 222 gctcagctatcagccgcacgcagaatctgcatcagattcaggaacaggttgataatgtcg 281 ||||||||||| || || | ||| | ||||| |||| |||||||| |||||| | |||| Sbjct: 209 gctcagctatcggctgccctcagcagctgcagcagagacaggaacaagttgatgacgtcg 268 Query: 282 aggtagagggacacggcagcccagatgtactcatcatacgtgtagcgcttgatgatgttg 341 |||||||| || || || ||||| ||||| | ||| || |||| |||||||||||| ||| Sbjct: 269 aggtagagtgaaacagctgcccatatgtattgatcgtatgtgtggcgcttgatgatattg 328 Query: 342 tccgtgtcgaagatgatgtagccacagaagatgatcgacgccacggccccatagatcatg 401 || ||||| ||||||| |||||||||||||| | || |||| | ||||| ||||| Sbjct: 329 tctgtgtcatagatgatatagccacagaagataagagatgccaatccaccatatatcatc 388 Query: 402 acggagatcttgcccagtgggaaaaagatctggataagtgagaacatcatcagcaccata 461 || |||||||||||||||||| ||||||||| ||||| |||| ||| |||||||| Sbjct: 389 acagagatcttgcccagtgggnnnnngatctggattagtgaaaacaccatgagcaccatg 448 Query: 462 agagctccaaacaggaaggggccaaggaagttgaagtcatggcctctctttgcagcccag 521 | ||| ||| ||||||||||| |||||||||||||||||||| ||||| ||||||||| Sbjct: 449 atagcagcaattaggaaggggccgaggaagttgaagtcatggcccctcttcgcagcccag 508 Query: 522 aaagtgtaggcagtcaagctgatcaccaccactgctgtcagaattgcagcttccaagatg 581 |||||||| ||||| |||||| |||||||||| ||||| ||||| ||||| ||||| ||| Sbjct: 509 aaagtgtaagcagttaagctgttcaccaccaccgctgtaagaatggcagcctccaaaatg 568 Query: 582 atttttccgctggtgaaggcgcacgtcatgccgacggcgaagctgatggagacggtgaag 641 | ||||| ||||| ||||| ||||||||||||||||||||||||| |||||||||| Sbjct: 569 annnnnccgctagtgaaagcgcatgtcatgccgacggcgaagctgatggcgacggtgaag 628 Query: 642 atgccgagcag 652 | ||||||||| Sbjct: 629 aggccgagcag 639
>gb|AY105221.1| Zea mays PCO086679 mRNA sequence Length = 1138 Score = 174 bits (88), Expect = 2e-40 Identities = 319/396 (80%) Strand = Plus / Minus Query: 260 caggaacaggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcata 319 |||||| |||||||||| ||| ||||| || || || || ||||||| ||||| || || Sbjct: 905 caggaagaggttgataacgtccaggtacagtgagactgcggcccagacgtactggtcgta 846 Query: 320 cgtgtagcgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaagatgatcga 379 ||||||||||||||||||||||| |||||| ||| |||||| || | |||||||| ||| Sbjct: 845 cgtgtagcgcttgatgatgttgtttgtgtcgtagacgatgtacccgctgaagatgagcga 786 Query: 380 cgccacggccccatagatcatgacggagatcttgcccagtgggaaaaagatctggataag 439 ||||| | || |||||||| ||||| ||||||||||||||| | ||||||||| || Sbjct: 785 cgccagcccgccgtagatcatctgggagagcttgcccagtgggaacaggatctggatgag 726 Query: 440 tgagaacatcatcagcaccataagagctccaaacaggaaggggccaaggaagttgaagtc 499 || ||||| | |||||| || | || | |||||||| || || |||||| ||||||| Sbjct: 725 tgcgaacacaagcagcactatgatggcggcgaacaggaaaggacccaggaagctgaagtc 666 Query: 500 atggcctctctttgcagcccagaaagtgtaggcagtcaagctgatcaccaccactgctgt 559 | ||| || || | |||||||||||||| || || | ||||| ||| ||||||| ||| Sbjct: 665 tttgcccctattcacggcccagaaagtgtatgcggtaaggctgagcacgaccactgttgt 606 Query: 560 cagaattgcagcttccaagatgatttttccgctggtgaaggcgcacgtcatgccgacggc 619 ||||||||||| |||| |||| || || ||||||||||| || |||||||| || || Sbjct: 605 cagaattgcagactccagaatgaccttgccactggtgaaggcacatgtcatgcccacagc 546 Query: 620 gaagctgatggagacggtgaagatgccgagcaggat 655 |||||||||| |||||||||| |||||||||||| Sbjct: 545 aaagctgatggcaacggtgaagaggccgagcaggat 510
>ref|XM_476832.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1205 Score = 147 bits (74), Expect = 5e-32 Identities = 155/182 (85%) Strand = Plus / Minus Query: 474 aggaaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgtaggca 533 ||||| |||||||||||| |||||||| |||| ||||||||||||||||| ||||||||| Sbjct: 648 aggaaagggccaaggaagctgaagtcacggcccctctttgcagcccagaatgtgtaggca 589 Query: 534 gtcaagctgatcaccaccactgctgtcagaattgcagcttccaagatgatttttccgctg 593 |||| ||| | ||| || |||| ||| |||||||||| |||| |||| || || ||| Sbjct: 588 gtcaggctaaacacaacaactgttgtaagaattgcagactccagaatgaccttgccactg 529 Query: 594 gtgaaggcgcacgtcatgccgacggcgaagctgatggagacggtgaagatgccgagcagg 653 ||||||||||| ||||| || || ||||||||||||| ||||||||||| ||||||||| Sbjct: 528 gtgaaggcgcatgtcatcccaaccgcgaagctgatggcgacggtgaagagaccgagcagg 469 Query: 654 at 655 || Sbjct: 468 at 467 Score = 137 bits (69), Expect = 5e-29 Identities = 147/173 (84%) Strand = Plus / Minus Query: 261 aggaacaggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatac 320 ||||| |||||||| | ||||||||||||||| ||||| ||||||| ||||| || || Sbjct: 861 aggaagaggttgatgacgtcgaggtagagggagacggcggcccagacgtactggtcgtag 802 Query: 321 gtgtagcgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaagatgatcgac 380 |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||| Sbjct: 801 gtgtagcgcttgatgatgttgtccgtgtcgtagacgatgtagccactgaagatgagcgac 742 Query: 381 gccacggccccatagatcatgacggagatcttgcccagtgggaaaaagatctg 433 || | | ||||||||||| ||||||| ||||||| ||||| | |||||| Sbjct: 741 gcgatcccgccatagatcatctgggagatcctgcccagcgggaataggatctg 689
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete sequence Length = 141582 Score = 147 bits (74), Expect = 5e-32 Identities = 101/110 (91%) Strand = Plus / Minus Query: 450 atcagcaccataagagctccaaacaggaaggggccaaggaagttgaagtcatggcctctc 509 ||||||||||| | ||| ||||||||||||||| ||||| |||||||||||||||||| Sbjct: 79888 atcagcaccatcacagcagaaaacaggaaggggccgaggaaattgaagtcatggcctctc 79829 Query: 510 tttgcagcccagaaagtgtaggcagtcaagctgatcaccaccactgctgt 559 |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 79828 tttgcagcccagaaagtgtatgctgtcaagctgatcaccaccactgctgt 79779 Score = 117 bits (59), Expect = 5e-23 Identities = 140/167 (83%) Strand = Plus / Minus Query: 267 aggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatacgtgtag 326 |||||||| | |||||||||||| || || |||||||||| |||||||| || |||||| Sbjct: 80195 aggttgatcacgtcgaggtagagcgagacagcagcccagacatactcatcgtaagtgtag 80136 Query: 327 cgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaagatgatcgacgccacg 386 ||||||||||| |||||||||||| |||||||||| ||| |||||| || ||| |||| Sbjct: 80135 cgcttgatgatattgtccgtgtcgtagatgatgtatccagagaagacgagcgatgccagt 80076 Query: 387 gccccatagatcatgacggagatcttgcccagtgggaaaaagatctg 433 | ||||| ||||| | ||||||||||||| |||||| || ||||| Sbjct: 80075 ccgccatatatcatttcagagatcttgcccaatgggaagaatatctg 80029 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Minus Query: 588 ccgctggtgaaggcgcacgtcatgccgacggcgaagctgatggagacggtgaagatgccg 647 ||||||||| |||| || ||||||||||||||||||||||||| || ||||||| |||| Sbjct: 78742 ccgctggtgtaggcacatgtcatgccgacggcgaagctgatggcaaccgtgaagaggccg 78683 Query: 648 agca 651 |||| Sbjct: 78682 agca 78679
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 147 bits (74), Expect = 5e-32 Identities = 101/110 (91%) Strand = Plus / Plus Query: 450 atcagcaccataagagctccaaacaggaaggggccaaggaagttgaagtcatggcctctc 509 ||||||||||| | ||| ||||||||||||||| ||||| |||||||||||||||||| Sbjct: 32799653 atcagcaccatcacagcagaaaacaggaaggggccgaggaaattgaagtcatggcctctc 32799712 Query: 510 tttgcagcccagaaagtgtaggcagtcaagctgatcaccaccactgctgt 559 |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 32799713 tttgcagcccagaaagtgtatgctgtcaagctgatcaccaccactgctgt 32799762 Score = 117 bits (59), Expect = 5e-23 Identities = 140/167 (83%) Strand = Plus / Plus Query: 267 aggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatacgtgtag 326 |||||||| | |||||||||||| || || |||||||||| |||||||| || |||||| Sbjct: 32799346 aggttgatcacgtcgaggtagagcgagacagcagcccagacatactcatcgtaagtgtag 32799405 Query: 327 cgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaagatgatcgacgccacg 386 ||||||||||| |||||||||||| |||||||||| ||| |||||| || ||| |||| Sbjct: 32799406 cgcttgatgatattgtccgtgtcgtagatgatgtatccagagaagacgagcgatgccagt 32799465 Query: 387 gccccatagatcatgacggagatcttgcccagtgggaaaaagatctg 433 | ||||| ||||| | ||||||||||||| |||||| || ||||| Sbjct: 32799466 ccgccatatatcatttcagagatcttgcccaatgggaagaatatctg 32799512 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 588 ccgctggtgaaggcgcacgtcatgccgacggcgaagctgatggagacggtgaagatgccg 647 ||||||||| |||| || ||||||||||||||||||||||||| || ||||||| |||| Sbjct: 32800799 ccgctggtgtaggcacatgtcatgccgacggcgaagctgatggcaaccgtgaagaggccg 32800858 Query: 648 agca 651 |||| Sbjct: 32800859 agca 32800862 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 261 aggaacaggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatac 320 ||||| |||||||| | |||||||||||| | ||||| ||||||| ||||| || || Sbjct: 30347467 aggaagaggttgatgacgtcgaggtagagcgcgacggcggcccagacatactcgtcgtag 30347408 Query: 321 gtgtagcgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaa 370 | ||| | |||||||| ||| ||||||||| | | ||||||||| ||||| Sbjct: 30347407 gagtacctcttgatgaggttatccgtgtcgtacacgatgtagccgcagaa 30347358 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 610 tgccgacggcgaagctgatg 629 |||||||||||||||||||| Sbjct: 33690884 tgccgacggcgaagctgatg 33690865
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 147 bits (74), Expect = 5e-32 Identities = 101/110 (91%) Strand = Plus / Plus Query: 450 atcagcaccataagagctccaaacaggaaggggccaaggaagttgaagtcatggcctctc 509 ||||||||||| | ||| ||||||||||||||| ||||| |||||||||||||||||| Sbjct: 32890163 atcagcaccatcacagcagaaaacaggaaggggccgaggaaattgaagtcatggcctctc 32890222 Query: 510 tttgcagcccagaaagtgtaggcagtcaagctgatcaccaccactgctgt 559 |||||||||||||||||||| || |||||||||||||||||||||||||| Sbjct: 32890223 tttgcagcccagaaagtgtatgctgtcaagctgatcaccaccactgctgt 32890272 Score = 117 bits (59), Expect = 5e-23 Identities = 140/167 (83%) Strand = Plus / Plus Query: 267 aggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatacgtgtag 326 |||||||| | |||||||||||| || || |||||||||| |||||||| || |||||| Sbjct: 32889856 aggttgatcacgtcgaggtagagcgagacagcagcccagacatactcatcgtaagtgtag 32889915 Query: 327 cgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaagatgatcgacgccacg 386 ||||||||||| |||||||||||| |||||||||| ||| |||||| || ||| |||| Sbjct: 32889916 cgcttgatgatattgtccgtgtcgtagatgatgtatccagagaagacgagcgatgccagt 32889975 Query: 387 gccccatagatcatgacggagatcttgcccagtgggaaaaagatctg 433 | ||||| ||||| | ||||||||||||| |||||| || ||||| Sbjct: 32889976 ccgccatatatcatttcagagatcttgcccaatgggaagaatatctg 32890022 Score = 71.9 bits (36), Expect = 3e-09 Identities = 57/64 (89%) Strand = Plus / Plus Query: 588 ccgctggtgaaggcgcacgtcatgccgacggcgaagctgatggagacggtgaagatgccg 647 ||||||||| |||| || ||||||||||||||||||||||||| || ||||||| |||| Sbjct: 32891309 ccgctggtgtaggcacatgtcatgccgacggcgaagctgatggcaaccgtgaagaggccg 32891368 Query: 648 agca 651 |||| Sbjct: 32891369 agca 32891372 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 261 aggaacaggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatac 320 ||||| |||||||| | |||||||||||| | ||||| ||||||| ||||| || || Sbjct: 30438889 aggaagaggttgatgacgtcgaggtagagcgcgacggcggcccagacatactcgtcgtag 30438830 Query: 321 gtgtagcgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaa 370 | ||| | |||||||| ||| ||||||||| | | ||||||||| ||||| Sbjct: 30438829 gagtacctcttgatgaggttatccgtgtcgtacacgatgtagccgcagaa 30438780 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 610 tgccgacggcgaagctgatg 629 |||||||||||||||||||| Sbjct: 33781356 tgccgacggcgaagctgatg 33781337
>dbj|AK073781.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033068H10, full insert sequence Length = 1203 Score = 147 bits (74), Expect = 5e-32 Identities = 155/182 (85%) Strand = Plus / Minus Query: 474 aggaaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgtaggca 533 ||||| |||||||||||| |||||||| |||| ||||||||||||||||| ||||||||| Sbjct: 646 aggaaagggccaaggaagctgaagtcacggcccctctttgcagcccagaatgtgtaggca 587 Query: 534 gtcaagctgatcaccaccactgctgtcagaattgcagcttccaagatgatttttccgctg 593 |||| ||| | ||| || |||| ||| |||||||||| |||| |||| || || ||| Sbjct: 586 gtcaggctaaacacaacaactgttgtaagaattgcagactccagaatgaccttgccactg 527 Query: 594 gtgaaggcgcacgtcatgccgacggcgaagctgatggagacggtgaagatgccgagcagg 653 ||||||||||| ||||| || || ||||||||||||| ||||||||||| ||||||||| Sbjct: 526 gtgaaggcgcatgtcatcccaaccgcgaagctgatggcgacggtgaagagaccgagcagg 467 Query: 654 at 655 || Sbjct: 466 at 465 Score = 137 bits (69), Expect = 5e-29 Identities = 147/173 (84%) Strand = Plus / Minus Query: 261 aggaacaggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatac 320 ||||| |||||||| | ||||||||||||||| ||||| ||||||| ||||| || || Sbjct: 859 aggaagaggttgatgacgtcgaggtagagggagacggcggcccagacgtactggtcgtag 800 Query: 321 gtgtagcgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaagatgatcgac 380 |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||| Sbjct: 799 gtgtagcgcttgatgatgttgtccgtgtcgtagacgatgtagccactgaagatgagcgac 740 Query: 381 gccacggccccatagatcatgacggagatcttgcccagtgggaaaaagatctg 433 || | | ||||||||||| ||||||| ||||||| ||||| | |||||| Sbjct: 739 gcgatcccgccatagatcatctgggagatcctgcccagcgggaataggatctg 687
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 137 bits (69), Expect = 5e-29 Identities = 147/173 (84%) Strand = Plus / Plus Query: 261 aggaacaggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatac 320 ||||| |||||||| | ||||||||||||||| ||||| ||||||| ||||| || || Sbjct: 4121726 aggaagaggttgatgacgtcgaggtagagggagacggcggcccagacgtactggtcgtag 4121785 Query: 321 gtgtagcgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaagatgatcgac 380 |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||| Sbjct: 4121786 gtgtagcgcttgatgatgttgtccgtgtcgtagacgatgtagccactgaagatgagcgac 4121845 Query: 381 gccacggccccatagatcatgacggagatcttgcccagtgggaaaaagatctg 433 || | | ||||||||||| ||||||| ||||||| ||||| | |||||| Sbjct: 4121846 gcgatcccgccatagatcatctgggagatcctgcccagcgggaataggatctg 4121898 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 474 aggaaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgtaggca 533 ||||| |||||||||||| |||||||| |||| ||||||||||||||||| ||||||||| Sbjct: 4122034 aggaaagggccaaggaagctgaagtcacggcccctctttgcagcccagaatgtgtaggca 4122093 Query: 534 gtcaagctgatcaccaccactgctgtcagaattgcag 570 |||| ||| | ||| || |||| ||| |||||||||| Sbjct: 4122094 gtcaggctaaacacaacaactgttgtaagaattgcag 4122130 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 591 ctggtgaaggcgcacgtcatgccgacggcgaagctgatggagacggtgaagatgccgagc 650 |||||||||||||| ||||| || || ||||||||||||| ||||||||||| |||||| Sbjct: 4123243 ctggtgaaggcgcatgtcatcccaaccgcgaagctgatggcgacggtgaagagaccgagc 4123302 Query: 651 aggat 655 ||||| Sbjct: 4123303 aggat 4123307 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 476 gaaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgtag 530 |||||||| |||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 4120205 gaaggggcggaggaagctgaagtcatggcctctcttggccgcccagaatgtgtag 4120259
>dbj|AP003826.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1361_E02 Length = 100168 Score = 137 bits (69), Expect = 5e-29 Identities = 147/173 (84%) Strand = Plus / Plus Query: 261 aggaacaggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatac 320 ||||| |||||||| | ||||||||||||||| ||||| ||||||| ||||| || || Sbjct: 5348 aggaagaggttgatgacgtcgaggtagagggagacggcggcccagacgtactggtcgtag 5407 Query: 321 gtgtagcgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaagatgatcgac 380 |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||| Sbjct: 5408 gtgtagcgcttgatgatgttgtccgtgtcgtagacgatgtagccactgaagatgagcgac 5467 Query: 381 gccacggccccatagatcatgacggagatcttgcccagtgggaaaaagatctg 433 || | | ||||||||||| ||||||| ||||||| ||||| | |||||| Sbjct: 5468 gcgatcccgccatagatcatctgggagatcctgcccagcgggaataggatctg 5520 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 474 aggaaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgtaggca 533 ||||| |||||||||||| |||||||| |||| ||||||||||||||||| ||||||||| Sbjct: 5656 aggaaagggccaaggaagctgaagtcacggcccctctttgcagcccagaatgtgtaggca 5715 Query: 534 gtcaagctgatcaccaccactgctgtcagaattgcag 570 |||| ||| | ||| || |||| ||| |||||||||| Sbjct: 5716 gtcaggctaaacacaacaactgttgtaagaattgcag 5752 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 591 ctggtgaaggcgcacgtcatgccgacggcgaagctgatggagacggtgaagatgccgagc 650 |||||||||||||| ||||| || || ||||||||||||| ||||||||||| |||||| Sbjct: 6865 ctggtgaaggcgcatgtcatcccaaccgcgaagctgatggcgacggtgaagagaccgagc 6924 Query: 651 aggat 655 ||||| Sbjct: 6925 aggat 6929 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 476 gaaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgtag 530 |||||||| |||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 3827 gaaggggcggaggaagctgaagtcatggcctctcttggccgcccagaatgtgtag 3881
>dbj|AP004307.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0534H07 Length = 144689 Score = 137 bits (69), Expect = 5e-29 Identities = 147/173 (84%) Strand = Plus / Plus Query: 261 aggaacaggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatac 320 ||||| |||||||| | ||||||||||||||| ||||| ||||||| ||||| || || Sbjct: 114584 aggaagaggttgatgacgtcgaggtagagggagacggcggcccagacgtactggtcgtag 114643 Query: 321 gtgtagcgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaagatgatcgac 380 |||||||||||||||||||||||||||||| ||| ||||||||||| |||||||| |||| Sbjct: 114644 gtgtagcgcttgatgatgttgtccgtgtcgtagacgatgtagccactgaagatgagcgac 114703 Query: 381 gccacggccccatagatcatgacggagatcttgcccagtgggaaaaagatctg 433 || | | ||||||||||| ||||||| ||||||| ||||| | |||||| Sbjct: 114704 gcgatcccgccatagatcatctgggagatcctgcccagcgggaataggatctg 114756 Score = 97.6 bits (49), Expect = 4e-17 Identities = 85/97 (87%) Strand = Plus / Plus Query: 474 aggaaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgtaggca 533 ||||| |||||||||||| |||||||| |||| ||||||||||||||||| ||||||||| Sbjct: 114892 aggaaagggccaaggaagctgaagtcacggcccctctttgcagcccagaatgtgtaggca 114951 Query: 534 gtcaagctgatcaccaccactgctgtcagaattgcag 570 |||| ||| | ||| || |||| ||| |||||||||| Sbjct: 114952 gtcaggctaaacacaacaactgttgtaagaattgcag 114988 Score = 73.8 bits (37), Expect = 6e-10 Identities = 58/65 (89%) Strand = Plus / Plus Query: 591 ctggtgaaggcgcacgtcatgccgacggcgaagctgatggagacggtgaagatgccgagc 650 |||||||||||||| ||||| || || ||||||||||||| ||||||||||| |||||| Sbjct: 116101 ctggtgaaggcgcatgtcatcccaaccgcgaagctgatggcgacggtgaagagaccgagc 116160 Query: 651 aggat 655 ||||| Sbjct: 116161 aggat 116165 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Plus Query: 476 gaaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgtag 530 |||||||| |||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 113063 gaaggggcggaggaagctgaagtcatggcctctcttggccgcccagaatgtgtag 113117
>dbj|AK120312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013055J23, full insert sequence Length = 406 Score = 127 bits (64), Expect = 5e-26 Identities = 148/176 (84%) Strand = Plus / Minus Query: 267 aggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatacgtgtag 326 |||||||| | |||||||||||| || || |||||||||| |||||||| || |||||| Sbjct: 186 aggttgatcacgtcgaggtagagcgagacagcagcccagacatactcatcgtaagtgtag 127 Query: 327 cgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaagatgatcgacgccacg 386 ||||||||||| |||||||||||| |||||||||| ||| |||||| || ||| |||| Sbjct: 126 cgcttgatgatattgtccgtgtcgtagatgatgtatccagagaagacgagcgatgccagt 67 Query: 387 gccccatagatcatgacggagatcttgcccagtgggaaaaagatctggataagtga 442 | ||||| ||||| | ||||||||||||| |||||| || |||||||| ||||| Sbjct: 66 ccgccatatatcatttcagagatcttgcccaatgggaagaatatctggatcagtga 11
>emb|AJ879936.2| Capsicum chinense mRNA for putative receptor associated protein (ORF1) Length = 1037 Score = 123 bits (62), Expect = 8e-25 Identities = 215/266 (80%) Strand = Plus / Minus Query: 297 gcagcccagatgtactcatcatacgtgtagcgcttgatgatgttgtccgtgtcgaagatg 356 ||||||||||||||||||||||| |||||||||||||| | ||||| || ||| | | | Sbjct: 758 gcagcccagatgtactcatcataagtgtagcgcttgattagattgtctgtatcgtaaacg 699 Query: 357 atgtagccacagaagatgatcgacgccacggccccatagatcatgacggagatcttgccc 416 ||||| |||||||| |||||||| |||| | ||||||||||| || || ||||| ||| Sbjct: 698 atgtatccacagaatatgatcgatgccagaccgccatagatcatcactgaaatcttaccc 639 Query: 417 agtgggaaaaagatctggataagtgagaacatcatcagcaccataagagctccaaacagg 476 || ||||| ||||||||||| | ||||||| | || || | |||||| || |||| | Sbjct: 638 agagggaagaagatctggattaaggagaacaatagaagaacaacaagagcaccgaacaag 579 Query: 477 aaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgtaggcagtc 536 || || || ||||||||||| || |||||||| || || |||||||| ||||| || ||| Sbjct: 578 aaaggtcccaggaagttgaaatcttggcctcttttagctgcccagaaggtgtatgctgtc 519 Query: 537 aagctgatcaccaccactgctgtcag 562 | || ||||||||| ||| |||||| Sbjct: 518 agactaatcaccaccgctgttgtcag 493
>gb|BT014225.1| Lycopersicon esculentum clone 133420R, mRNA sequence Length = 1133 Score = 105 bits (53), Expect = 2e-19 Identities = 188/233 (80%) Strand = Plus / Minus Query: 297 gcagcccagatgtactcatcatacgtgtagcgcttgatgatgttgtccgtgtcgaagatg 356 ||||||||||||||||||||||| ||||| |||||||| | ||||| || || ||| Sbjct: 731 gcagcccagatgtactcatcataagtgtaccgcttgattagattgtctgtatcatagaca 672 Query: 357 atgtagccacagaagatgatcgacgccacggccccatagatcatgacggagatcttgccc 416 ||||| |||||||| ||||||||||| | |||||||||||| || |||||||| ||| Sbjct: 671 atgtacccacagaatatgatcgacgcaagacacccatagatcatcactgagatcttaccc 612 Query: 417 agtgggaaaaagatctggataagtgagaacatcatcagcaccataagagctccaaacagg 476 || ||||||| |||||||| | || |||| || || || |||||||| ||||||| Sbjct: 611 agagggaaaagaatctggatgaaggaaaacaacagaagaacaataagagcaccaaacaaa 552 Query: 477 aaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 || || || ||||||||||| || |||||||| || || |||||||| ||||| Sbjct: 551 aaaggtcccaggaagttgaaatcttggcctcttttagccgcccagaaggtgta 499
>gb|AC139748.12| Medicago truncatula clone mth2-15o24, complete sequence Length = 144217 Score = 69.9 bits (35), Expect = 1e-08 Identities = 56/63 (88%) Strand = Plus / Plus Query: 468 ccaaacaggaaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtg 527 ||||||| ||||||||||||||||||||| |||| |||||| |||||||||| || ||| Sbjct: 121100 ccaaacaagaaggggccaaggaagttgaaatcatagcctctacttgcagcccaaaatgtg 121159 Query: 528 tag 530 ||| Sbjct: 121160 tag 121162
>ref|NM_116196.1| Arabidopsis thaliana glutamate binding AT3G63310 mRNA, complete cds Length = 720 Score = 65.9 bits (33), Expect = 2e-07 Identities = 138/173 (79%) Strand = Plus / Minus Query: 357 atgtagccacagaagatgatcgacgccacggccccatagatcatgacggagatcttgccc 416 |||||||||||||||||||| || |||| ||||||||||| || |||||||| || Sbjct: 587 atgtagccacagaagatgatggatgccaaacaaccatagatcatcacagagatctttcct 528 Query: 417 agtgggaaaaagatctggataagtgagaacatcatcagcaccataagagctccaaacagg 476 | ||||| | |||||||| | || |||| ||| || || || | ||| || |||| | Sbjct: 527 aaagggaagagaatctggatgaaggaaaacaccatgaggacaatgacagcaccgaacaag 468 Query: 477 aaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 || || || ||||||||||||||||||||||| || || |||||||||||||| Sbjct: 467 aaaggtccgaggaagttgaagtcatggcctcttttggccgcccagaaagtgta 415
>gb|BT020236.1| Arabidopsis thaliana At3g63310 gene, complete cds Length = 892 Score = 65.9 bits (33), Expect = 2e-07 Identities = 138/173 (79%) Strand = Plus / Minus Query: 357 atgtagccacagaagatgatcgacgccacggccccatagatcatgacggagatcttgccc 416 |||||||||||||||||||| || |||| ||||||||||| || |||||||| || Sbjct: 677 atgtagccacagaagatgatggatgccaaacaaccatagatcatcacagagatctttcct 618 Query: 417 agtgggaaaaagatctggataagtgagaacatcatcagcaccataagagctccaaacagg 476 | ||||| | |||||||| | || |||| ||| || || || | ||| || |||| | Sbjct: 617 aaagggaagagaatctggatgaaggaaaacaccatgaggacaatgacagcaccgaacaag 558 Query: 477 aaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 || || || ||||||||||||||||||||||| || || |||||||||||||| Sbjct: 557 aaaggtccgaggaagttgaagtcatggcctcttttggccgcccagaaagtgta 505
>gb|BT021132.1| Arabidopsis thaliana At3g63310 gene, complete cds Length = 720 Score = 65.9 bits (33), Expect = 2e-07 Identities = 138/173 (79%) Strand = Plus / Minus Query: 357 atgtagccacagaagatgatcgacgccacggccccatagatcatgacggagatcttgccc 416 |||||||||||||||||||| || |||| ||||||||||| || |||||||| || Sbjct: 587 atgtagccacagaagatgatggatgccaaacaaccatagatcatcacagagatctttcct 528 Query: 417 agtgggaaaaagatctggataagtgagaacatcatcagcaccataagagctccaaacagg 476 | ||||| | |||||||| | || |||| ||| || || || | ||| || |||| | Sbjct: 527 aaagggaagagaatctggatgaaggaaaacaccatgaggacaatgacagcaccgaacaag 468 Query: 477 aaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 || || || ||||||||||||||||||||||| || || |||||||||||||| Sbjct: 467 aaaggtccgaggaagttgaagtcatggcctcttttggccgcccagaaagtgta 415
>emb|AL163818.1|ATMAA21 Arabidopsis thaliana DNA chromosome 3, P1 clone MAA21 (ESSA project) Length = 79153 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 486 aggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 ||||||||||||||||||||||| || || |||||||||||||| Sbjct: 10577 aggaagttgaagtcatggcctcttttggccgcccagaaagtgta 10620 Score = 40.1 bits (20), Expect = 9.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 357 atgtagccacagaagatgatcgacgccacggccccatagatcatgacggagatctt 412 |||||||||||||||||||| || |||| ||||||||||| || |||||||| Sbjct: 10371 atgtagccacagaagatgatggatgccaaacaaccatagatcatcacagagatctt 10426
>emb|AL138648.2|ATF16M2 Arabidopsis thaliana DNA chromosome 3, BAC clone F16M2 Length = 75106 Score = 63.9 bits (32), Expect = 6e-07 Identities = 41/44 (93%) Strand = Plus / Plus Query: 486 aggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 ||||||||||||||||||||||| || || |||||||||||||| Sbjct: 55960 aggaagttgaagtcatggcctcttttggccgcccagaaagtgta 56003 Score = 40.1 bits (20), Expect = 9.0 Identities = 47/56 (83%) Strand = Plus / Plus Query: 357 atgtagccacagaagatgatcgacgccacggccccatagatcatgacggagatctt 412 |||||||||||||||||||| || |||| ||||||||||| || |||||||| Sbjct: 55754 atgtagccacagaagatgatggatgccaaacaaccatagatcatcacagagatctt 55809
>ref|XM_476831.1| Oryza sativa (japonica cultivar-group), mRNA Length = 923 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 476 gaaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgtag 530 |||||||| |||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 495 gaaggggcggaggaagctgaagtcatggcctctcttggccgcccagaatgtgtag 441
>dbj|AK070925.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023070O07, full insert sequence Length = 922 Score = 61.9 bits (31), Expect = 2e-06 Identities = 49/55 (89%) Strand = Plus / Minus Query: 476 gaaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgtag 530 |||||||| |||||| ||||||||||||||||||| || |||||||| |||||| Sbjct: 494 gaaggggcggaggaagctgaagtcatggcctctcttggccgcccagaatgtgtag 440
>gb|BT014369.1| Lycopersicon esculentum clone 133657R, mRNA sequence Length = 1241 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Minus Query: 297 gcagcccagatgtactcatcatacgtgtagcgcttgat 334 |||||||||||||||||||| || |||||||||||||| Sbjct: 677 gcagcccagatgtactcatcgtaagtgtagcgcttgat 640
>ref|NM_116503.1| Arabidopsis thaliana glutamate binding AT4G02690 mRNA, complete cds Length = 747 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 267 aggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatacgtgt 324 |||||||| ||||| |||||||| || || || ||||| || |||||||||||||||| Sbjct: 704 aggttgatgatgtctaggtagagtgaaaccgctgcccaaatatactcatcatacgtgt 647
>ref|XM_469710.1| Oryza sativa (japonica cultivar-group), mRNA Length = 690 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Minus Query: 261 aggaacaggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatac 320 ||||| |||||||| | |||||||||||| | ||||| ||||||| ||||| || || Sbjct: 653 aggaagaggttgatgacgtcgaggtagagcgcgacggcggcccagacatactcgtcgtag 594 Query: 321 gtgtagcgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaa 370 | ||| | |||||||| ||| ||||||||| | | ||||||||| ||||| Sbjct: 593 gagtacctcttgatgaggttatccgtgtcgtacacgatgtagccgcagaa 544
>gb|AC002330.1| Arabidopsis thaliana BAC T10P11 from chromosome IV, near 15 cM, complete sequence Length = 113566 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 267 aggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatacgtgt 324 |||||||| ||||| |||||||| || || || ||||| || |||||||||||||||| Sbjct: 23603 aggttgatgatgtctaggtagagtgaaaccgctgcccaaatatactcatcatacgtgt 23660
>gb|AY735634.1| Arabidopsis thaliana chromosome 4 hypothetical protein AT4G02690 mRNA, complete cds, alternatively spliced Length = 1498 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 267 aggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatacgtgt 324 |||||||| ||||| |||||||| || || || ||||| || |||||||||||||||| Sbjct: 1169 aggttgatgatgtctaggtagagtgaaaccgctgcccaaatatactcatcatacgtgt 1112
>gb|AY735633.1| Arabidopsis thaliana chromosome 4 hypothetical protein AT4G02690 mRNA, complete cds, alternatively spliced Length = 1356 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 267 aggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatacgtgt 324 |||||||| ||||| |||||||| || || || ||||| || |||||||||||||||| Sbjct: 1008 aggttgatgatgtctaggtagagtgaaaccgctgcccaaatatactcatcatacgtgt 951
>emb|AL161495.2|ATCHRIV7 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 7 Length = 199615 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 267 aggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatacgtgt 324 |||||||| ||||| |||||||| || || || ||||| || |||||||||||||||| Sbjct: 33250 aggttgatgatgtctaggtagagtgaaaccgctgcccaaatatactcatcatacgtgt 33193
>gb|AC087852.11| Oryza sativa chromosome 3 BAC OJ1124_H03 genomic sequence, complete sequence Length = 149380 Score = 52.0 bits (26), Expect = 0.002 Identities = 89/110 (80%) Strand = Plus / Plus Query: 261 aggaacaggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatac 320 ||||| |||||||| | |||||||||||| | ||||| ||||||| ||||| || || Sbjct: 129548 aggaagaggttgatgacgtcgaggtagagcgcgacggcggcccagacatactcgtcgtag 129607 Query: 321 gtgtagcgcttgatgatgttgtccgtgtcgaagatgatgtagccacagaa 370 | ||| | |||||||| ||| ||||||||| | | ||||||||| ||||| Sbjct: 129608 gagtacctcttgatgaggttatccgtgtcgtacacgatgtagccgcagaa 129657
>gb|AY924811.1| Arabidopsis thaliana hypothetical protein (At4g02690) mRNA, complete cds Length = 747 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Minus Query: 267 aggttgataatgtcgaggtagagggacacggcagcccagatgtactcatcatacgtgt 324 |||||||| ||||| |||||||| || || || ||||| || |||||||||||||||| Sbjct: 704 aggttgatgatgtctaggtagagtgaaaccgctgcccaaatatactcatcatacgtgt 647
>dbj|AP006429.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT17D07, TM0322, complete sequence Length = 109570 Score = 50.1 bits (25), Expect = 0.009 Identities = 73/89 (82%) Strand = Plus / Minus Query: 465 gctccaaacaggaaggggccaaggaagttgaagtcatggcctctctttgcagcccagaaa 524 |||||||||| ||||||||| | ||| |||| ||||| |||||| |||| ||||| || Sbjct: 78350 gctccaaacaagaaggggcccaaaaagctgaaatcatgacctctccttgcggcccaaaat 78291 Query: 525 gtgtaggcagtcaagctgatcaccaccac 553 |||||| || | ||||||||||||||| Sbjct: 78290 gtgtagagtgttaggctgatcaccaccac 78262
>emb|BX825703.1|CNS0A67U Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL57ZF05 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 998 Score = 48.1 bits (24), Expect = 0.037 Identities = 37/40 (92%), Gaps = 1/40 (2%) Strand = Plus / Minus Query: 490 agttgaagtcatggcctctctttgcagcccagaaagtgta 529 ||||||||||||||||||| |||| |||||||||||||| Sbjct: 572 agttgaagtcatggcctct-tttggcgcccagaaagtgta 534 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 atgtagccacagaagatgat 376 |||||||||||||||||||| Sbjct: 705 atgtagccacagaagatgat 686
>ref|NM_117636.2| Arabidopsis thaliana unknown protein AT4G15470 mRNA, complete cds Length = 1170 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 483 ccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 ||||||||| ||||||| | || |||||||||||||||||||||| Sbjct: 606 ccaaggaagctgaagtcttttcccttctttgcagcccagaaagtgta 560
>gb|AY811375.1| Schistosoma japonicum SJCHGC09479 protein mRNA, partial cds Length = 1396 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 261 aggaacaggttgataatgtcgag 283 ||||||||||||||||||||||| Sbjct: 1247 aggaacaggttgataatgtcgag 1225
>emb|Z97339.2|ATFCA4 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 4 Length = 205065 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 483 ccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 ||||||||| ||||||| | || |||||||||||||||||||||| Sbjct: 13783 ccaaggaagctgaagtcttttcccttctttgcagcccagaaagtgta 13737
>gb|AF319555.1| Epinephelus tauvina nervous necrosis virus segment RNA1 protein A and protein B2 mRNAs, complete cds Length = 3103 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 238 cacgcagaatctgcatcagattc 260 ||||||||||||||||||||||| Sbjct: 760 cacgcagaatctgcatcagattc 738
>gb|AY097356.1| Arabidopsis thaliana AT4g15470/dl3775w mRNA, complete cds Length = 771 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 483 ccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 ||||||||| ||||||| | || |||||||||||||||||||||| Sbjct: 512 ccaaggaagctgaagtcttttcccttctttgcagcccagaaagtgta 466
>gb|AY056115.1| Arabidopsis thaliana AT4g15470/dl3775w mRNA, complete cds Length = 988 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 483 ccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 ||||||||| ||||||| | || |||||||||||||||||||||| Sbjct: 557 ccaaggaagctgaagtcttttcccttctttgcagcccagaaagtgta 511
>ref|XM_628117.1| Cryptosporidium parvum Iowa II ER lumen protein retaining (KDEL) RECEPTOR 1 (cgd1_3010), partial mRNA Length = 855 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 147 tatctgcaggcatccatgaattt 169 ||||||||||||||||||||||| Sbjct: 532 tatctgcaggcatccatgaattt 510
>gb|AY050443.1| Arabidopsis thaliana AT4g15470/dl3775w mRNA, complete cds Length = 983 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 483 ccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 ||||||||| ||||||| | || |||||||||||||||||||||| Sbjct: 557 ccaaggaagctgaagtcttttcccttctttgcagcccagaaagtgta 511
>emb|BX826378.1|CNS0A385 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB1ZH07 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1025 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 483 ccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 ||||||||| ||||||| | || |||||||||||||||||||||| Sbjct: 575 ccaaggaagctgaagtcttttcccttctttgcagcccagaaagtgta 529
>gb|AF326776.1| Epinephelus tauvina nervous necrosis virus segment RNA1, complete sequence Length = 3007 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 238 cacgcagaatctgcatcagattc 260 ||||||||||||||||||||||| Sbjct: 705 cacgcagaatctgcatcagattc 683
>emb|AL161541.2|ATCHRIV41 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 41 Length = 197419 Score = 46.1 bits (23), Expect = 0.15 Identities = 41/47 (87%) Strand = Plus / Minus Query: 483 ccaaggaagttgaagtcatggcctctctttgcagcccagaaagtgta 529 ||||||||| ||||||| | || |||||||||||||||||||||| Sbjct: 163256 ccaaggaagctgaagtcttttcccttctttgcagcccagaaagtgta 163210
>ref|XM_367013.1| Magnaporthe grisea 70-15 chromosome VII hypothetical protein (MG03089.4) partial mRNA Length = 849 Score = 44.1 bits (22), Expect = 0.57 Identities = 25/26 (96%) Strand = Plus / Minus Query: 261 aggaacaggttgataatgtcgaggta 286 |||||||||||||| ||||||||||| Sbjct: 809 aggaacaggttgatgatgtcgaggta 784
>ref|XM_662918.1| Cryptosporidium hominis TU502 ER lumen protein retaining receptor-like protein (Chro.10334) partial mRNA Length = 855 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 147 tatctgcaggcatccatgaatt 168 |||||||||||||||||||||| Sbjct: 532 tatctgcaggcatccatgaatt 511
>emb|BX681417.10| Zebrafish DNA sequence from clone DKEY-161L11 in linkage group 2, complete sequence Length = 233760 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 157 catccatgaattttctgatatg 178 |||||||||||||||||||||| Sbjct: 224217 catccatgaattttctgatatg 224196
>gb|AC119839.8| Mus musculus chromosome 1, clone RP24-170N13, complete sequence Length = 165405 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 33 ttttatatgcagacaaatggt 53 ||||||||||||||||||||| Sbjct: 95825 ttttatatgcagacaaatggt 95805
>gb|AC124173.2| Mus musculus BAC clone RP23-173I4 from 13, complete sequence Length = 207960 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 gtgagcctattttatatgcag 44 ||||||||||||||||||||| Sbjct: 23303 gtgagcctattttatatgcag 23283
>emb|BX842654.1| Bdellovibrio bacteriovorus complete genome, strain HD100; segment 9/11 Length = 344249 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 330 ttgatgatgttgtccgtgtcgaaga 354 |||||||||||||||| |||||||| Sbjct: 17858 ttgatgatgttgtccgggtcgaaga 17834
>gb|AC110794.3| Homo sapiens BAC clone RP11-598O12 from 4, complete sequence Length = 148841 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 tgagcctattttatatgcaga 45 ||||||||||||||||||||| Sbjct: 104786 tgagcctattttatatgcaga 104766
>gb|AC055714.11| Homo sapiens 3 BAC RP11-85P9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 167788 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 163 tgaattttctgatatgcacaa 183 ||||||||||||||||||||| Sbjct: 47464 tgaattttctgatatgcacaa 47444
>gb|AC154537.3| Mus musculus BAC clone RP23-451F20 from chromosome 13, complete sequence Length = 181229 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 24 gtgagcctattttatatgcag 44 ||||||||||||||||||||| Sbjct: 124418 gtgagcctattttatatgcag 124398
>gb|AC005230.1|AC005230 Homo sapiens PAC clone RP5-1163L11 from 14q24.3, complete sequence Length = 112902 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 444 aacatcatcagcaccataaga 464 ||||||||||||||||||||| Sbjct: 85724 aacatcatcagcaccataaga 85744
>emb|AL928960.25| Mouse DNA sequence from clone RP23-413K16 on chromosome 2, complete sequence Length = 195733 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 274 taatgtcgaggtagagggaca 294 ||||||||||||||||||||| Sbjct: 181309 taatgtcgaggtagagggaca 181329
>ref|XM_470050.1| Oryza sativa (japonica cultivar-group), mRNA Length = 951 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 610 tgccgacggcgaagctgatg 629 |||||||||||||||||||| Sbjct: 506 tgccgacggcgaagctgatg 525
>gb|AC127171.54| Mus musculus strain C57BL/6J clone rp23-202i7 map 10, complete sequence Length = 194193 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 atcaccaccactgctgtcag 562 |||||||||||||||||||| Sbjct: 148190 atcaccaccactgctgtcag 148209
>gb|AC127417.3| Mus musculus BAC clone RP23-459M2 from chromosome 10, complete sequence Length = 192814 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ctacaggtatctgcaggcat 159 |||||||||||||||||||| Sbjct: 106418 ctacaggtatctgcaggcat 106399
>ref|XM_456170.1| Kluyveromyces lactis NRRL Y-1140, KLLA0F24464g predicted mRNA Length = 1113 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 acatcatcagcaccataaga 464 |||||||||||||||||||| Sbjct: 656 acatcatcagcaccataaga 637
>gb|BT012317.1| Drosophila melanogaster GH11957 full insert cDNA Length = 1302 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 ggagacggtgaagatgccga 648 |||||||||||||||||||| Sbjct: 776 ggagacggtgaagatgccga 795
>gb|AC137507.3| Oryza sativa chromosome 3 BAC OSJNBb0033J23 genomic sequence, complete sequence Length = 126862 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 610 tgccgacggcgaagctgatg 629 |||||||||||||||||||| Sbjct: 62253 tgccgacggcgaagctgatg 62234
>gb|AE008733.1| Salmonella typhimurium LT2, section 41 of 220 of the complete genome Length = 21470 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 259 tcaggaacaggttgataatgtcgaggta 286 |||||||||||||||||| ||| ||||| Sbjct: 10031 tcaggaacaggttgataaagtccaggta 10004
>emb|CR382126.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome F of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2602197 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 acatcatcagcaccataaga 464 |||||||||||||||||||| Sbjct: 2279400 acatcatcagcaccataaga 2279381
>emb|BX950851.1| Erwinia carotovora subsp. atroseptica SCRI1043, complete genome Length = 5064019 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 259 tcaggaacaggttgataatgtcgaggta 286 |||||||||||||||| | ||||||||| Sbjct: 3153884 tcaggaacaggttgatgaagtcgaggta 3153911
>gb|AY129337.1| Mycobacteriophage Bxz1, complete genome Length = 156102 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 529 aggcagtcaagctgatcacc 548 |||||||||||||||||||| Sbjct: 151397 aggcagtcaagctgatcacc 151416
>gb|AC121765.2| Homo sapiens chromosome 3 clone RP11-767D18, complete sequence Length = 194455 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ttttctgatatgcacaagct 186 |||||||||||||||||||| Sbjct: 187658 ttttctgatatgcacaagct 187677
>gb|AC009840.7| Drosophila melanogaster 3L BAC RP98-2B14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 194790 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 629 ggagacggtgaagatgccga 648 |||||||||||||||||||| Sbjct: 61727 ggagacggtgaagatgccga 61708
>gb|AC105266.2| Homo sapiens chromosome 3 clone RP11-796K6, complete sequence Length = 181462 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ttttctgatatgcacaagct 186 |||||||||||||||||||| Sbjct: 143584 ttttctgatatgcacaagct 143603
>ref|NM_168857.1| Drosophila melanogaster CG11796-RA, transcript variant A (CG11796), mRNA Length = 1308 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 ggagacggtgaagatgccga 648 |||||||||||||||||||| Sbjct: 790 ggagacggtgaagatgccga 809
>ref|NM_140968.2| Drosophila melanogaster CG11796-RB, transcript variant B (CG11796), mRNA Length = 1523 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 ggagacggtgaagatgccga 648 |||||||||||||||||||| Sbjct: 1005 ggagacggtgaagatgccga 1024
>gb|DQ077525.1| Salmonella enterica subsp. enterica serovar Typhimurium isolate M1855 putative permease (ybhL) gene, partial cds; mutated intergenic region TM781, complete sequence; and putative integral membrane protein (ybhM) gene, partial cds Length = 1166 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 259 tcaggaacaggttgataatgtcgaggta 286 |||||||||||||||||| ||| ||||| Sbjct: 70 tcaggaacaggttgataaagtccaggta 43
>gb|AY047523.1| Drosophila melanogaster GH03058 full length cDNA Length = 1507 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 ggagacggtgaagatgccga 648 |||||||||||||||||||| Sbjct: 981 ggagacggtgaagatgccga 1000
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 613 cgacggcgaagctgatggag 632 |||||||||||||||||||| Sbjct: 2007185 cgacggcgaagctgatggag 2007166
>gb|CP000029.1| Staphylococcus epidermidis RP62A, complete genome Length = 2616530 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 174 atatgcacaagctagaggacttaaatca 201 ||||||||| | |||||||||||||||| Sbjct: 1574141 atatgcacatgatagaggacttaaatca 1574114
>gb|AY111991.1| Zea mays CL5706_1 mRNA sequence Length = 609 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 262 ggaacaggttgataatgtcgaggtagag 289 |||| |||||||| |||||||||||||| Sbjct: 271 ggaagaggttgatgatgtcgaggtagag 298
>gb|AC007870.3|AC007870 Genomic sequence for Homo sapiens clone 4P6, complete sequence Length = 134757 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 167 ttttctgatatgcacaagct 186 |||||||||||||||||||| Sbjct: 9553 ttttctgatatgcacaagct 9572
>gb|AE003591.4| Drosophila melanogaster chromosome 3L, section 72 of 83 of the complete sequence Length = 301136 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 629 ggagacggtgaagatgccga 648 |||||||||||||||||||| Sbjct: 111019 ggagacggtgaagatgccga 111000
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 259 tcaggaacaggttgataatgtcgaggta 286 |||||||||||||||||| ||| ||||| Sbjct: 902659 tcaggaacaggttgataaagtccaggta 902632
>dbj|D00666.1|PEENIFUHD Plectonema boryanum gene for NifU protein, dinitrogenase reductase, dinitrogenase alpha-subunit, complete cds Length = 3409 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 549 accactgctgtcagaattgcagct 572 |||||||||| ||||||||||||| Sbjct: 330 accactgctgccagaattgcagct 353
>gb|AC138528.8| Mus musculus chromosome 3, clone RP23-329L9, complete sequence Length = 188290 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 aaacaggaaggggccaagga 489 |||||||||||||||||||| Sbjct: 97864 aaacaggaaggggccaagga 97845
>dbj|AP004508.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT03K03, TM0036c, complete sequence Length = 22758 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 cagtgggaaaaagatctgga 435 |||||||||||||||||||| Sbjct: 6856 cagtgggaaaaagatctgga 6837
>emb|AL606909.12| Mouse DNA sequence from clone RP23-133N19 on chromosome 4, complete sequence Length = 105830 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 atcaccaccactgctgtcag 562 |||||||||||||||||||| Sbjct: 65328 atcaccaccactgctgtcag 65347 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,215,259 Number of Sequences: 3902068 Number of extensions: 5215259 Number of successful extensions: 123608 Number of sequences better than 10.0: 82 Number of HSP's better than 10.0 without gapping: 80 Number of HSP's successfully gapped in prelim test: 2 Number of HSP's that attempted gapping in prelim test: 123183 Number of HSP's gapped (non-prelim): 408 length of query: 656 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 633 effective length of database: 17,143,297,704 effective search space: 10851707446632 effective search space used: 10851707446632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)