>RBCMT_ARATH (Q9XI84) Probable ribulose-1,5 bisphosphate carboxylase/oxygenase|
           large subunit N-methyltransferase, chloroplast precursor
           (EC 2.1.1.127) ([Ribulose-bisphosphate
           carboxylase]-lysine N-methyltransferase) (RuBisCO
           methyltransferase) (RuBisco LS
          Length = 482

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 48/158 (30%), Positives = 79/158 (50%), Gaps = 8/158 (5%)
 Frame = -1

Query: 670 NSRLLLNYGFVDEDNPYDRIAIEASLNTEDPQYQEKRMVAQRNGKLAIQKFQVCVGKEKQ 491
           N+ L L+YGFV+ +   +   +   +   DP + +K  +A+ N       F +  G   Q
Sbjct: 287 NAELALDYGFVESNPKRNSYTLTIEIPESDPFFGDKLDIAESNKMGETGYFDIVDG---Q 343

Query: 490 TI-SEMLPYLRLGYISDPDEMQCILSSEGDTC-------PVSPCSERAVLDQLVVYLKSR 335
           T+ + ML YLRL  +  PD    +L S  +         PVS  +E  +   +    KS 
Sbjct: 344 TLPAGMLQYLRLVALGGPDAF--LLESIFNNTIWGHLELPVSRTNEELICRVVRDACKSA 401

Query: 334 LAGYPTNLDEDEAMLADGSLEPKKEVATRLVRLEKKML 221
           L+G+ T ++EDE +L  G LEP+ E+A ++   EK++L
Sbjct: 402 LSGFDTTIEEDEKLLDKGKLEPRLEMALKIRIGEKRVL 439

>RBCMT_TOBAC (P94026) Ribulose-1,5 bisphosphate carboxylase/oxygenase large|
           subunit N-methyltransferase, chloroplast precursor (EC
           2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine
           N-methyltransferase) (RuBisCO methyltransferase)
           (RuBisco LSMT) (rbcM
          Length = 491

 Score = 62.0 bits (149), Expect = 2e-09
 Identities = 42/155 (27%), Positives = 78/155 (50%), Gaps = 5/155 (3%)
 Frame = -1

Query: 670 NSRLLLNYGFVDEDNPYDRIAIEASLNTEDPQYQEKRMVAQRNGKLAIQKFQVCVGKEKQ 491
           N+ + L+YGF++  +  D   +   ++  D  Y +K  +A+ NG      F + +G+   
Sbjct: 296 NADMALDYGFIEPSSARDAFTLTLEISESDEFYGDKLDIAETNGIGETAYFDIKIGQSLP 355

Query: 490 TISEMLPYLRLGYISDPDE--MQCILSSE--GDT-CPVSPCSERAVLDQLVVYLKSRLAG 326
               M+PYLRL  +   D   ++ I  +   G    PVS  +E  +   +    KS L+G
Sbjct: 356 PT--MIPYLRLVALGGTDAFLLESIFRNSVWGHLGLPVSRANEELICKVVRDACKSALSG 413

Query: 325 YPTNLDEDEAMLADGSLEPKKEVATRLVRLEKKML 221
           Y T ++EDE ++ +G+L  + ++A  +   EK++L
Sbjct: 414 YHTTIEEDEKLMEEGNLSTRLQIAVGIRLGEKRVL 448

>RBCMT_PEA (Q43088) Ribulose-1,5 bisphosphate carboxylase/oxygenase large|
           subunit N-methyltransferase, chloroplast precursor (EC
           2.1.1.127) ([Ribulose-bisphosphate carboxylase]-lysine
           N-methyltransferase) (RuBisCO methyltransferase)
           (RuBisco LSMT) (rbcMT)
          Length = 489

 Score = 49.7 bits (117), Expect = 8e-06
 Identities = 42/156 (26%), Positives = 71/156 (45%), Gaps = 6/156 (3%)
 Frame = -1

Query: 670 NSRLLLNYGFVDEDNPYDRIAIEASLNTEDPQYQEKRMVAQRNGKLAIQKFQVCVGKEKQ 491
           N+ L L+YGF++ +       +   ++  DP + +K  VA+ NG      F +   +   
Sbjct: 293 NAELALDYGFIEPNENRHAYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLP 352

Query: 490 TISEMLPYLRLGYISDPDEMQCILSSEGDT------CPVSPCSERAVLDQLVVYLKSRLA 329
               +LPYLRL  +   D    + S   DT        VS  +E  +   +    KS LA
Sbjct: 353 --PGLLPYLRLVALGGTDAF-LLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALA 409

Query: 328 GYPTNLDEDEAMLADGSLEPKKEVATRLVRLEKKML 221
           GY T +++D   L +G+L+ +  +A  +   EK +L
Sbjct: 410 GYHTTIEQDRE-LKEGNLDSRLAIAVGIREGEKMVL 444

>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c|
           precursor
          Length = 943

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 2/129 (1%)
 Frame = +3

Query: 135 SGAYSAGQGDTV*SGKPLMNSLAASRQPCSIFFSNLTSLVATSFFGSKLPSANIASSSSK 314
           S A S+    T  S     +SLA+S        ++ TS  ATS   S   ++N A+SSS 
Sbjct: 174 SSATSSSLSSTAASNSATSSSLASSS------LNSTTSATATSSSLSSTAASNSATSSSL 227

Query: 315 LVG*PANLDFRYTTSWSSTARSEQGLTGHVSP--SDESIHCISSGSEMYPSLKYGSISEI 488
                A+     TTS ++T+ S        +P  S  S    +S S    S +Y + S +
Sbjct: 228 -----ASSSLNSTTSATATSSSISSTVSSSTPLTSSNSTTAATSASATSSSAQYNT-SSL 281

Query: 489 VCFSLPTQT 515
           +  S P+ T
Sbjct: 282 LPSSTPSST 290

>MEGF6_RAT (O88281) Multiple epidermal growth factor-like domains 6 precursor|
           (EGF-like domain-containing protein 3) (Multiple
           EGF-like domain protein 3)
          Length = 1574

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 19/50 (38%), Positives = 24/50 (48%)
 Frame = -1

Query: 457 GYISDPDEMQCILSSEGDTCPVSPCSERAVLDQLVVYLKSRLAGYPTNLD 308
           GY  D D+  CI   + D C  SPC ++A  +    Y  S  AGY  N D
Sbjct: 363 GYELDEDQKTCI---DIDDCANSPCCQQACANTPGGYECSCFAGYRLNTD 409

>RKM1_YEAST (Q08961) Ribosomal N-lysine methyltransferase 1 (EC 2.1.1.-)|
          Length = 583

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 50/216 (23%), Positives = 81/216 (37%), Gaps = 37/216 (17%)
 Frame = -1

Query: 670 NSRLLLNYGFVDEDNPYDRIAIEASLNTE------DPQYQEKRMVAQRNGKLAIQKFQVC 509
           N  LL  YGFV EDN +D +A++  L  +      + +   K  +       A +  + C
Sbjct: 278 NEELLSGYGFVLEDNIFDSVALKVKLPLDVVSTILETEPSLKLPLLSDYTTYAFEN-KDC 336

Query: 508 VGKEKQTISEMLPYLR-LGYISDPDEMQCILSSEGDTCPVSPCSERAVLDQLVVYLKSRL 332
           V +EK+       Y+  + Y  +    QC+         +S   E  + D     L++RL
Sbjct: 337 VQQEKKATRSATDYINGVTYFINIQNEQCLEPLLDLFTYLSKAEEEDLHD-----LRARL 391

Query: 331 AGY----------------PTNLDEDEA----------MLADGSLEPKKEVATRLVRLEK 230
            G                 P   D+  A          +   G  +  KE  TRL +LEK
Sbjct: 392 QGIQMLRNALQSKLNSITGPPATDDSYAIDPYRVYCADVYTKGQKQILKEALTRLKKLEK 451

Query: 229 KML----HGCLEAANEFISGLPDHTVSPCPALYAPE 134
            ML    H  L   ++ +   P    +  P+L++ E
Sbjct: 452 TMLSENKHQLL-TMSKILKNDPAFAETELPSLFSNE 486

>YG1F_YEAST (P53214) Hypothetical 57.5 kDa protein in VMA7-RPS25A intergenic|
           region
          Length = 551

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 32/109 (29%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
 Frame = +3

Query: 174 SGKPLMNSLAASRQPCSIFF-SNLTSLVATSFFGSKLPSANIASSSSKLVG*PANLDFRY 350
           S   + +S++ S    S++  S+ TS   +S   S+L S++ +SSSS      ++  F Y
Sbjct: 186 SSSLISSSISTSVSTSSVYVPSSSTSSPPSS--SSELTSSSYSSSSS------SSTLFSY 237

Query: 351 TTSWSSTARSEQGLTGHVSPSDESIH-----CISSGSEMYPSLKYGSIS 482
           ++S+SS++ S    +   S S  S         SS S +Y S  Y S S
Sbjct: 238 SSSFSSSSSSSSSSSSSSSSSSSSSSSYFTLSTSSSSSIYSSSSYPSFS 286

>CAYP2_MOUSE (Q8BUG5) Calcyphosin-2 (Calcyphosine-2)|
          Length = 550

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
 Frame = -1

Query: 514 VCVGKEKQTISE--MLPYLRLGYISDPDEMQCILSSEGDTCPVSPCSERAVL 365
           V + K+KQT++E  M+ +L    ISDP+  Q + +   ++  V P SERA L
Sbjct: 152 VAIEKKKQTVAEQMMMDHLSRAVISDPE--QDLNTKNQESSRVPPDSERAPL 201

>EXO1_XENLA (Q9W6K2) Exonuclease 1 (EC 3.1.-.-) (Exonuclease I)|
          Length = 734

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 20/65 (30%), Positives = 32/65 (49%)
 Frame = -1

Query: 343 KSRLAGYPTNLDEDEAMLADGSLEPKKEVATRLVRLEKKMLHGCLEAANEFISGLPDHTV 164
           K+R     TNL + + +L +G L   +E  +R V +   M H  ++AA    S   D+ V
Sbjct: 90  KARREKRQTNLQKGKQLLREGKLAEARECFSRSVNITSSMAHEVIKAAR---SEGVDYIV 146

Query: 163 SPCPA 149
           +P  A
Sbjct: 147 APYEA 151

>CL190_DROME (Q9VJE5) Restin homolog (Cytoplasmic linker protein 190)|
           (Microtubule-binding protein 190) (d-CLIP-190)
          Length = 1690

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -1

Query: 274 EPKKEVATRLVRLEKKMLHGCLEAANEFISGLPD--HTVSPCPALYAPELK*GNLFGRNK 101
           EPK+ + +RL RL    L G     +      PD   TVSP  ++ +  L+   + G+N 
Sbjct: 177 EPKRGIFSRLTRLTTYPLAGAQTPTSPLAKSSPDRSRTVSPTASIRSSMLRSPGIGGKNG 236

Query: 100 DIVG 89
             VG
Sbjct: 237 MAVG 240

>RDRP_LYCVA (P14240) RNA-directed RNA polymerase (EC 2.7.7.48)|
          Length = 2210

 Score = 29.6 bits (65), Expect = 8.6
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
 Frame = -2

Query: 591 TLKILNTKRREWLLKEMESLQS--KNSKSV*AKRSKLFLKCCHT 466
           +LK+LNT+RR+ L  ++  L S  K SK    K  K ++ CC++
Sbjct: 329 SLKLLNTRRRQLLNLDVLCLSSLIKQSKFKGLKNDKHWVGCCYS 372


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,573,688
Number of Sequences: 219361
Number of extensions: 1972870
Number of successful extensions: 5252
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5015
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5249
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6484657212
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)