ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal35b13 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY568303.1| Triticum aestivum CCAAT-box transcription factor complex WHAP9 (WHAP9) mRNA, complete cds Length = 1199 Score = 468 bits (236), Expect = e-128 Identities = 349/384 (90%), Gaps = 7/384 (1%) Strand = Plus / Minus Query: 218 ccacacacataagccaaggatgatttgccagggggcaacggcgccgccctaggcgccccc 277 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 1110 ccacacacataagccaaggatgatttgccagggggcaaaggc-ccgccctaggcgccccc 1052 Query: 278 tctcgcgcggtaatggaagtcaccggacggtaaggtgtggtcgtgcttcgagaacatgcc 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1051 tctcgcgcggtaatggaagtcaccggacggtaaggtgtggtcgtgcttcgagaacatgcc 992 Query: 338 gcc---gtccgcaggaacgctggcatgcccagacctcgccgatgcattgccgccgccgga 394 || ||| | |||||||| ||| || ||||| || || |||||||||||||||||||| Sbjct: 991 accaccgtctgtaggaacgccggcgtggccagatcttgctgatgcattgccgccgccgga 932 Query: 395 agccgcctcggacttctccttcgcgttgaggaaccgcccgcctgtcccccgagcccgctt 454 |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 931 ggccgcctcggacttctcctttgcgttgaggaaccgcccgcctgtcccccgagcccgctt 872 Query: 455 catcgcgtgctgatgcctggactcatggaggtacggctgaacagaggcatgaatgttgtg 514 |||||||||||| |||| |||||| ||||||||||||||||||||||||||||| || || Sbjct: 871 catcgcgtgctggtgccgggactcgtggaggtacggctgaacagaggcatgaatattatg 812 Query: 515 ttatgttgagtgtgtccggactaaattcattt---ctacagggaaaggaaatcaaaagat 571 |||||| ||||| | ||||||||||||||| ||||||||||| ||| |||||||| Sbjct: 811 ttatgtagagtgcatgtggactaaattcatttctactacagggaaaataaaccaaaagat 752 Query: 572 gctcaaggggccaacgatagtact 595 || | |||||||||||||||||| Sbjct: 751 gccgatggggccaacgatagtact 728
>gb|AY568301.1| Triticum aestivum CCAAT-box transcription factor complex WHAP7 (WHAP7) mRNA, complete cds Length = 927 Score = 383 bits (193), Expect = e-103 Identities = 256/275 (93%), Gaps = 4/275 (1%) Strand = Plus / Minus Query: 218 ccacacacataagccaaggatgatttgccagggggcaacggcgccgccctaggcgccccc 277 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 838 ccacacacataagccaaggatgatttgccagggggcaaaggc-ccgccctaggcgccccc 780 Query: 278 tctcgcgcggtaatggaagtcaccggacggtaaggtgtggtcgtgcttcgagaacatgcc 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 779 tctcgcgcggtaatggaagtcaccggacggtaaggtgtggtcgtgcttcgagaacatgcc 720 Query: 338 gccgtccgcaggaacgctggcatgcccagacctcgccgatgcattgccgccgccggaagc 397 |||||| |||||||||| ||| | |||| ||||| |||||||||||||||||||| Sbjct: 719 gccgtctgcaggaacgccggcgtagccaggtctcgctgatgcattgccgccgccgga--- 663 Query: 398 cgcctcggacttctccttcgcgttgaggaaccgcccgcctgtcccccgagcccgcttcat 457 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 662 ggcctcggacttctccttcgcgttgaggaaccgcccgcctgttccccgggcccgcttcat 603 Query: 458 cgcgtgctgatgcctggactcatggaggtacggct 492 ||||||||| |||| |||||| ||||||||||||| Sbjct: 602 cgcgtgctggtgccgggactcgtggaggtacggct 568
>gb|AY568300.1| Triticum aestivum CCAAT-box transcription factor complex WHAP6 (WHAP6) mRNA, complete cds Length = 927 Score = 383 bits (193), Expect = e-103 Identities = 256/275 (93%), Gaps = 4/275 (1%) Strand = Plus / Minus Query: 218 ccacacacataagccaaggatgatttgccagggggcaacggcgccgccctaggcgccccc 277 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 838 ccacacacataagccaaggatgatttgccagggggcaaaggc-ccgccctaggcgccccc 780 Query: 278 tctcgcgcggtaatggaagtcaccggacggtaaggtgtggtcgtgcttcgagaacatgcc 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 779 tctcgcgcggtaatggaagtcaccggacggtaaggtgtggtcgtgcttcgagaacatgcc 720 Query: 338 gccgtccgcaggaacgctggcatgcccagacctcgccgatgcattgccgccgccggaagc 397 |||||| |||||||||| ||| | |||| ||||| |||||||||||||||||||| Sbjct: 719 gccgtctgcaggaacgccggcgtagccaggtctcgctgatgcattgccgccgccgga--- 663 Query: 398 cgcctcggacttctccttcgcgttgaggaaccgcccgcctgtcccccgagcccgcttcat 457 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 662 ggcctcggacttctccttcgcgttgaggaaccgcccgcctgttccccgggcccgcttcat 603 Query: 458 cgcgtgctgatgcctggactcatggaggtacggct 492 ||||||||| |||| |||||| ||||||||||||| Sbjct: 602 cgcgtgctggtgccgggactcgtggaggtacggct 568
>gb|AY568302.1| Triticum aestivum CCAAT-box transcription factor complex WHAP8 (WHAP8) mRNA, complete cds Length = 926 Score = 375 bits (189), Expect = e-100 Identities = 255/275 (92%), Gaps = 4/275 (1%) Strand = Plus / Minus Query: 218 ccacacacataagccaaggatgatttgccagggggcaacggcgccgccctaggcgccccc 277 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 838 ccacacacataagccaaggatgatttgccagggggcaaaggc-ccgccctaggcgccccc 780 Query: 278 tctcgcgcggtaatggaagtcaccggacggtaaggtgtggtcgtgcttcgagaacatgcc 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 779 tctcgcgcggtaatggaagtcaccggacggtaaggtgtggtcgtgcttcgagaacatgcc 720 Query: 338 gccgtccgcaggaacgctggcatgcccagacctcgccgatgcattgccgccgccggaagc 397 |||||| ||||||| || ||| | |||| ||||| |||||||||||||||||||| Sbjct: 719 gccgtctgcaggaatgccggcgtagccaggtctcgctgatgcattgccgccgccgga--- 663 Query: 398 cgcctcggacttctccttcgcgttgaggaaccgcccgcctgtcccccgagcccgcttcat 457 ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 662 ggcctcggacttctccttcgcgttgaggaaccgcccgcctgttccccgggcccgcttcat 603 Query: 458 cgcgtgctgatgcctggactcatggaggtacggct 492 ||||||||| |||| |||||| ||||||||||||| Sbjct: 602 cgcgtgctggtgccgggactcgtggaggtacggct 568
>gb|AY568298.1| Triticum aestivum CCAAT-box transcription factor complex WHAP4 (WHAP4) mRNA, complete cds Length = 930 Score = 373 bits (188), Expect = e-100 Identities = 280/307 (91%), Gaps = 9/307 (2%) Strand = Plus / Minus Query: 193 tatcattcgaccgagttgacggtc----gccacacacataagccaaggatgatttgccag 248 ||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| | Sbjct: 872 tatcattggaccgaattgacggtcattcgccacacacataagccaaggatgatttgcc-g 814 Query: 249 ggggcaacggcgccgccctaggcgccccctctcgcgcggtaatggaagtcaccggacggt 308 ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 813 ggggcaaaggc-ccgccctaggcgccccctcttgcgcggtaatggaagtcaccggacggt 755 Query: 309 aaggtgtggtcgtgcttcgagaacatgccgcc---gtccgcaggaacgctggcatgccca 365 ||||||||||||||||||||||||||||| || ||| | |||||||| ||| || ||| Sbjct: 754 aaggtgtggtcgtgcttcgagaacatgccaccaccgtctgtaggaacgccggcgtggcca 695 Query: 366 gacctcgccgatgcattgccgccgccggaagccgcctcggacttctccttcgcgttgagg 425 || || || |||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 694 gatcttgctgatgcattgccgccgccggaggccgcctcggacttctcctttgcgttgagg 635 Query: 426 aaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactcatggagg 485 ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| Sbjct: 634 aaccgcccgcctgtcccccgagcccgcttcatcgcgtgctggtgccgggactcgtggagg 575 Query: 486 tacggct 492 ||||||| Sbjct: 574 tacggct 568
>gb|AY568297.1| Triticum aestivum CCAAT-box transcription factor complex WHAP3 (WHAP3) mRNA, complete cds Length = 932 Score = 373 bits (188), Expect = e-100 Identities = 280/307 (91%), Gaps = 9/307 (2%) Strand = Plus / Minus Query: 193 tatcattcgaccgagttgacggtc----gccacacacataagccaaggatgatttgccag 248 ||||||| |||||| ||||||||| ||||||||||||||||||||||||||||| | Sbjct: 872 tatcattggaccgaattgacggtcattcgccacacacataagccaaggatgatttgct-g 814 Query: 249 ggggcaacggcgccgccctaggcgccccctctcgcgcggtaatggaagtcaccggacggt 308 ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 813 ggggcaaaggc-ccgccctaggcgccccctcttgcgcggtaatggaagtcaccggacggt 755 Query: 309 aaggtgtggtcgtgcttcgagaacatgccgcc---gtccgcaggaacgctggcatgccca 365 ||||||||||||||||||||||||||||| || ||||| |||||||| ||| || ||| Sbjct: 754 aaggtgtggtcgtgcttcgagaacatgccaccaccgtccgtaggaacgccggcgtggcca 695 Query: 366 gacctcgccgatgcattgccgccgccggaagccgcctcggacttctccttcgcgttgagg 425 || || || |||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 694 gatcttgctgatgcattgccgccgccggaggccgcctcggacttctcctttgcgttgagg 635 Query: 426 aaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactcatggagg 485 ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| Sbjct: 634 aaccgcccgcctgtcccccgagcccgcttcatcgcgtgctggtgccgggactcgtggagg 575 Query: 486 tacggct 492 ||||||| Sbjct: 574 tacggct 568
>gb|AY456087.2| Triticum aestivum CCAAT-box transcription factor complex WHAP2 (WHAP2) mRNA, complete cds Length = 1124 Score = 373 bits (188), Expect = e-100 Identities = 280/307 (91%), Gaps = 9/307 (2%) Strand = Plus / Minus Query: 193 tatcattcgaccgagttgacggtc----gccacacacataagccaaggatgatttgccag 248 ||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| | Sbjct: 872 tatcattggaccgaattgacggtcattcgccacacacataagccaaggatgatttgcc-g 814 Query: 249 ggggcaacggcgccgccctaggcgccccctctcgcgcggtaatggaagtcaccggacggt 308 ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 813 ggggcaaaggc-ccgccctaggcgccccctcttgcgcggtaatggaagtcaccggacggt 755 Query: 309 aaggtgtggtcgtgcttcgagaacatgccgcc---gtccgcaggaacgctggcatgccca 365 ||||||||||||||||||||||||||||| || ||| | |||||||| ||| || ||| Sbjct: 754 aaggtgtggtcgtgcttcgagaacatgccaccaccgtctgtaggaacgccggcgtggcca 695 Query: 366 gacctcgccgatgcattgccgccgccggaagccgcctcggacttctccttcgcgttgagg 425 || || || |||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 694 gatcttgctgatgcattgccgccgccggaggccgcctcggacttctcctttgcgttgagg 635 Query: 426 aaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactcatggagg 485 ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| Sbjct: 634 aaccgcccgcctgtcccccgagcccgcttcatcgcgtgctggtgccgggactcgtggagg 575 Query: 486 tacggct 492 ||||||| Sbjct: 574 tacggct 568 Score = 75.8 bits (38), Expect = 2e-10 Identities = 48/50 (96%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 23 aaagtgacaggaaaaaagtt-aagcaggctccagcttagcagcacctgcc 71 ||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 1048 aaagtgacaggaaaacagttcaagcaggctccagcttagcagcacctgcc 999
>gb|AY568306.1| Triticum aestivum CCAAT-box transcription factor complex WHAP12 (WHAP12) mRNA, complete cds Length = 926 Score = 369 bits (186), Expect = 7e-99 Identities = 254/275 (92%), Gaps = 5/275 (1%) Strand = Plus / Minus Query: 218 ccacacacataagccaaggatgatttgccagggggcaacggcgccgccctaggcgccccc 277 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 837 ccacacacataagccaaggatgatttgccagggggcaaaggc-ccgccctaggcgccccc 779 Query: 278 tctcgcgcggtaatggaagtcaccggacggtaaggtgtggtcgtgcttcgagaacatgcc 337 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 778 tctcgcgcggtaatggaagtcaccggacggtaaggtgtggtcgcgcttcgagaacatgcc 719 Query: 338 gccgtccgcaggaacgctggcatgcccagacctcgccgatgcattgccgccgccggaagc 397 |||||| |||||||||| ||| | |||| ||||| |||||||||||||||||||| Sbjct: 718 gccgtctgcaggaacgccggcgtagccaggtctcgctgatgcattgccgccgccgga--- 662 Query: 398 cgcctcggacttctccttcgcgttgaggaaccgcccgcctgtcccccgagcccgcttcat 457 |||||||||||| |||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct: 661 -gcctcggacttccccttcgcgttgaggaaccgcccgcctgttccccgggcccgcttcat 603 Query: 458 cgcgtgctgatgcctggactcatggaggtacggct 492 ||||||||| |||| |||||| ||||||||||||| Sbjct: 602 cgcgtgctggtgccgggactcgtggaggtacggct 568
>gb|AY568305.1| Triticum aestivum CCAAT-box transcription factor complex WHAP11 (WHAP11) mRNA, complete cds Length = 927 Score = 367 bits (185), Expect = 3e-98 Identities = 254/275 (92%), Gaps = 4/275 (1%) Strand = Plus / Minus Query: 218 ccacacacataagccaaggatgatttgccagggggcaacggcgccgccctaggcgccccc 277 |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| Sbjct: 838 ccacacacataagccaaggatgatttgccagggggcaaaggc-ccgccctaggcgccccc 780 Query: 278 tctcgcgcggtaatggaagtcaccggacggtaaggtgtggtcgtgcttcgagaacatgcc 337 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 779 tctcgcgcggtaatggaagtcaccggacggtaaggtgtggtcgtgcttcgagaacatgcc 720 Query: 338 gccgtccgcaggaacgctggcatgcccagacctcgccgatgcattgccgccgccggaagc 397 |||||| |||||||||| ||| | |||| ||||| |||||||||||||||||||| Sbjct: 719 gccgtctgcaggaacgccggcgtagccaggtctcgctgatgcattgccgccgccgga--- 663 Query: 398 cgcctcggacttctccttcgcgttgaggaaccgcccgcctgtcccccgagcccgcttcat 457 |||||||||||||||||||||| ||||||||| |||||||| ||||| ||||||||||| Sbjct: 662 ggcctcggacttctccttcgcgtagaggaaccgtccgcctgttccccgggcccgcttcat 603 Query: 458 cgcgtgctgatgcctggactcatggaggtacggct 492 ||||||||| |||| |||||| ||||||||||||| Sbjct: 602 cgcgtgctggtgccgggactcgtggaggtacggct 568
>gb|AY568307.1| Triticum aestivum CCAAT-box transcription factor complex WHAP13 (WHAP13) mRNA, complete cds Length = 931 Score = 365 bits (184), Expect = 1e-97 Identities = 279/307 (90%), Gaps = 9/307 (2%) Strand = Plus / Minus Query: 193 tatcattcgaccgagttgacggtc----gccacacacataagccaaggatgatttgccag 248 ||||||| |||||| ||||||||| |||||||||||| ||||||||||||||||| | Sbjct: 872 tatcattggaccgaattgacggtcattcgccacacacatacgccaaggatgatttgcc-g 814 Query: 249 ggggcaacggcgccgccctaggcgccccctctcgcgcggtaatggaagtcaccggacggt 308 ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 813 ggggcaaaggc-ccgccctaggcgccccctcttgcgcggtaatggaagtcaccggacggt 755 Query: 309 aaggtgtggtcgtgcttcgagaacatgccgcc---gtccgcaggaacgctggcatgccca 365 ||||||||||||||||||||||||||||| || ||| | |||||||| ||| || ||| Sbjct: 754 aaggtgtggtcgtgcttcgagaacatgccaccaccgtctgtaggaacgccggcgtggcca 695 Query: 366 gacctcgccgatgcattgccgccgccggaagccgcctcggacttctccttcgcgttgagg 425 || || || |||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 694 gatcttgctgatgcattgccgccgccggaggccgcctcggacttctcctttgcgttgagg 635 Query: 426 aaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactcatggagg 485 ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| Sbjct: 634 aaccgcccgcctgtcccccgagcccgcttcatcgcgtgctggtgccgggactcgtggagg 575 Query: 486 tacggct 492 ||||||| Sbjct: 574 tacggct 568
>gb|AY568304.1| Triticum aestivum CCAAT-box transcription factor complex WHAP10 (WHAP10) mRNA, complete cds Length = 932 Score = 365 bits (184), Expect = 1e-97 Identities = 279/307 (90%), Gaps = 9/307 (2%) Strand = Plus / Minus Query: 193 tatcattcgaccgagttgacggtc----gccacacacataagccaaggatgatttgccag 248 ||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| | Sbjct: 872 tatcattggaccgaattgacggtcattcgccacacacataagccaaggatgatttgcc-g 814 Query: 249 ggggcaacggcgccgccctaggcgccccctctcgcgcggtaatggaagtcaccggacggt 308 ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 813 ggggcaaaggc-ccgccctaggcgccccctcttgcgcggtaatggaagtcaccggacggt 755 Query: 309 aaggtgtggtcgtgcttcgagaacatgccgcc---gtccgcaggaacgctggcatgccca 365 ||||||||||||||||||||||||||||| || ||| | |||||||| ||| || ||| Sbjct: 754 aaggtgtggtcgtgcttcgagaacatgccaccaccgtctgtaggaacgccggcgtggcca 695 Query: 366 gacctcgccgatgcattgccgccgccggaagccgcctcggacttctccttcgcgttgagg 425 || || || |||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct: 694 gatcttgctgatgcattgccgccgccggaggccgcctcggacttctcctctgcgttgagg 635 Query: 426 aaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactcatggagg 485 ||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| Sbjct: 634 aaccgcccgcctgtcccccgagcccgcttcatcgcgtgctggtgccgggactcgtggagg 575 Query: 486 tacggct 492 ||||||| Sbjct: 574 tacggct 568
>gb|AY568299.1| Triticum aestivum CCAAT-box transcription factor complex WHAP5 (WHAP5) mRNA, complete cds Length = 931 Score = 365 bits (184), Expect = 1e-97 Identities = 279/307 (90%), Gaps = 9/307 (2%) Strand = Plus / Minus Query: 193 tatcattcgaccgagttgacggtc----gccacacacataagccaaggatgatttgccag 248 ||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| | Sbjct: 871 tatcattggaccgaattgacggtcattcgccacacacataagccaaggatgatttgcc-g 813 Query: 249 ggggcaacggcgccgccctaggcgccccctctcgcgcggtaatggaagtcaccggacggt 308 ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 812 ggggcaaaggc-ccgccctaggcgccccctcttgcgcggtaatggaagtcaccggacggt 754 Query: 309 aaggtgtggtcgtgcttcgagaacatgccgcc---gtccgcaggaacgctggcatgccca 365 ||||||||||||||||||||||||||||| || ||| | |||||||| ||| || ||| Sbjct: 753 aaggtgtggtcgtgcttcgagaacatgccaccaccgtctgtaggaacgccggcgtggcca 694 Query: 366 gacctcgccgatgcattgccgccgccggaagccgcctcggacttctccttcgcgttgagg 425 || || || |||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 693 gatcttgctgatgcattgccgccgccggaggccgcctcggacttctcctttgcgttgagg 634 Query: 426 aaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactcatggagg 485 |||||||||||||||||||||||||| |||||||||||||| |||| |||||| |||||| Sbjct: 633 aaccgcccgcctgtcccccgagcccgtttcatcgcgtgctggtgccgggactcgtggagg 574 Query: 486 tacggct 492 ||||||| Sbjct: 573 tacggct 567
>gb|AY568295.1| Triticum aestivum CCAAT-box transcription factor complex WHAP1 (WHAP1) mRNA, complete cds Length = 932 Score = 365 bits (184), Expect = 1e-97 Identities = 279/307 (90%), Gaps = 9/307 (2%) Strand = Plus / Minus Query: 193 tatcattcgaccgagttgacggtc----gccacacacataagccaaggatgatttgccag 248 ||||||| |||||| ||||||||| |||||||||||||||||||||||||||||| | Sbjct: 872 tatcattggaccgaattgacggtcattcgccacacacataagccaaggatgatttgcc-g 814 Query: 249 ggggcaacggcgccgccctaggcgccccctctcgcgcggtaatggaagtcaccggacggt 308 ||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 813 ggggcaaaggc-ccgccctaggcgccccctcttgcgcggtaatggaagtcaccggacggt 755 Query: 309 aaggtgtggtcgtgcttcgagaacatgccgcc---gtccgcaggaacgctggcatgccca 365 ||||||||||||||||||||||||||||| || ||| | |||||||| ||| || ||| Sbjct: 754 aaggtgtggtcgtgcttcgagaacatgccaccaccgtctgtaggaacgccggcgtggcca 695 Query: 366 gacctcgccgatgcattgccgccgccggaagccgcctcggacttctccttcgcgttgagg 425 || || || |||||||||||||||||||| |||||||||||||||||||| ||||||||| Sbjct: 694 gatcttgctgatgcattgccgccgccggaggccgcctcggacttctcctttgcgttgagg 635 Query: 426 aaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactcatggagg 485 |||||||||||||||| |||||||||||||||||||||||| |||| |||||| |||||| Sbjct: 634 aaccgcccgcctgtcctccgagcccgcttcatcgcgtgctggtgccgggactcgtggagg 575 Query: 486 tacggct 492 ||||||| Sbjct: 574 tacggct 568
>gb|BT009512.1| Triticum aestivum clone wr1.pk0094.f2:fis, full insert mRNA sequence Length = 1061 Score = 361 bits (182), Expect = 2e-96 Identities = 271/299 (90%), Gaps = 10/299 (3%) Strand = Plus / Minus Query: 201 gaccgagttgacggtc----gccacacacataagccaaggatgatttgccagggggcaac 256 |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 698 gaccgagttgacggtcattcgccacacacataagccaaggatgatttgccagggggcaac 639 Query: 257 ggcg---ccgccctaggcgccccctctcgcgcggtaatggaagtcaccggacggtaaggt 313 ||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 638 tgcgtgcccaccctaggcgccccctctcgcgcggtaatggaagtcaccggatggtaaggt 579 Query: 314 gtggtcgtgcttcgagaacatgccgccgtccgcaggaacgctggcatgcccagacctcgc 373 ||||||||||||||||||||||||||| |||| ||||||| ||| || ||||||||||| Sbjct: 578 gtggtcgtgcttcgagaacatgccgccatccgggggaacgccggcgtggccagacctcgc 519 Query: 374 cgatgcattgccgccgccggaagccgcctcggacttctccttcgcgttgaggaaccgccc 433 ||||||||||||||||| ||| || || ||||||||||| ||||||||||||||||| Sbjct: 518 tgatgcattgccgccgcctgaa---gcttcagacttctcctttgcgttgaggaaccgccc 462 Query: 434 gcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactcatggaggtacggct 492 |||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||| Sbjct: 461 gcctgttccccgagcccgcttcatcgcgtgctggtgccgggactcatgcaggtacggct 403 Score = 75.8 bits (38), Expect = 2e-10 Identities = 48/50 (96%), Gaps = 1/50 (2%) Strand = Plus / Minus Query: 23 aaagtgacaggaaaaaagtt-aagcaggctccagcttagcagcacctgcc 71 ||||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 888 aaagtgacaggaaaacagttcaagcaggctccagcttagcagcacctgcc 839
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 85.7 bits (43), Expect = 2e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 419 gttgaggaaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactc 478 ||||||||| | ||| ||||| |||||||| | |||||||||||| ||||||| ||| || Sbjct: 3984182 gttgaggaatctcccccctgttccccgagctctcttcatcgcgtgttgatgccgggattc 3984241 Query: 479 atggaggtacggctgaaca 497 ||||||||||||||||||| Sbjct: 3984242 atggaggtacggctgaaca 3984260 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 221 cacacataagccaaggatgatttgcca 247 ||||||||||||||||||||||||||| Sbjct: 3984000 cacacataagccaaggatgatttgcca 3984026
>gb|AC090484.4| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0061L19, from chromosome 3, complete sequence Length = 153322 Score = 85.7 bits (43), Expect = 2e-13 Identities = 70/79 (88%) Strand = Plus / Minus Query: 419 gttgaggaaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactc 478 ||||||||| | ||| ||||| |||||||| | |||||||||||| ||||||| ||| || Sbjct: 115186 gttgaggaatctcccccctgttccccgagctctcttcatcgcgtgttgatgccgggattc 115127 Query: 479 atggaggtacggctgaaca 497 ||||||||||||||||||| Sbjct: 115126 atggaggtacggctgaaca 115108 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 221 cacacataagccaaggatgatttgcca 247 ||||||||||||||||||||||||||| Sbjct: 115368 cacacataagccaaggatgatttgcca 115342
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 85.7 bits (43), Expect = 2e-13 Identities = 70/79 (88%) Strand = Plus / Plus Query: 419 gttgaggaaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactc 478 ||||||||| | ||| ||||| |||||||| | |||||||||||| ||||||| ||| || Sbjct: 3984293 gttgaggaatctcccccctgttccccgagctctcttcatcgcgtgttgatgccgggattc 3984352 Query: 479 atggaggtacggctgaaca 497 ||||||||||||||||||| Sbjct: 3984353 atggaggtacggctgaaca 3984371 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 221 cacacataagccaaggatgatttgcca 247 ||||||||||||||||||||||||||| Sbjct: 3984111 cacacataagccaaggatgatttgcca 3984137
>gb|BT016638.1| Zea mays clone Contig471 mRNA sequence Length = 1267 Score = 79.8 bits (40), Expect = 1e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 413 cttcgcgttgaggaaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcct 472 ||||| ||| ||||||||||||||||| |||||||| | ||||||||||||| | |||| Sbjct: 779 cttcgtgttcaggaaccgcccgcctgttccccgagctctcttcatcgcgtgcaggtgccg 720 Query: 473 ggactcatggaggtacggct 492 ||||| ||||||||||||| Sbjct: 719 agactcgtggaggtacggct 700
>gb|AY109469.1| Zea mays CL724_1 mRNA sequence Length = 1303 Score = 79.8 bits (40), Expect = 1e-11 Identities = 70/80 (87%) Strand = Plus / Minus Query: 413 cttcgcgttgaggaaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcct 472 ||||| ||| ||||||||||||||||| |||||||| | ||||||||||||| | |||| Sbjct: 779 cttcgtgttcaggaaccgcccgcctgttccccgagctctcttcatcgcgtgcaggtgccg 720 Query: 473 ggactcatggaggtacggct 492 ||||| ||||||||||||| Sbjct: 719 agactcgtggaggtacggct 700
>dbj|AK069348.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014B08, full insert sequence Length = 1253 Score = 75.8 bits (38), Expect = 2e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 419 gttgaggaaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactc 478 ||||||||| | ||| ||||| |||||||| | |||||||||||| ||||||| ||| || Sbjct: 835 gttgaggaatctcccccctgttccccgagctctcttcatcgcgtgttgatgccgggattc 776 Query: 479 atggaggtacggct 492 |||||||||||||| Sbjct: 775 atggaggtacggct 762 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 221 cacacataagccaaggatgatttgcca 247 ||||||||||||||||||||||||||| Sbjct: 1017 cacacataagccaaggatgatttgcca 991
>emb|Y10905.1|OSRAPB Oryza sativa mRNA RAPB protein Length = 1020 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 419 gttgaggaaccgcccgcctgtcccccgagcccgcttcatcgcgtgctgatgcctggactc 478 ||||||||| | ||| ||||| |||||||| | ||||||||||| ||||||| ||| || Sbjct: 649 gttgaggaatctcccccctgttccccgagctcttttcatcgcgtgttgatgccgggattc 590 Query: 479 atggaggtacggct 492 |||||||||||||| Sbjct: 589 atggaggtacggct 576 Score = 54.0 bits (27), Expect = 6e-04 Identities = 27/27 (100%) Strand = Plus / Minus Query: 221 cacacataagccaaggatgatttgcca 247 ||||||||||||||||||||||||||| Sbjct: 828 cacacataagccaaggatgatttgcca 802
>gb|BT009594.1| Triticum aestivum clone wre1n.pk0066.e4:fis, full insert mRNA sequence Length = 1260 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 419 gttgaggaaccgcccgcctgtcccccgagcccgcttcat 457 ||||||||||||||| ||||| || ||||| |||||||| Sbjct: 582 gttgaggaaccgccctcctgttccacgagctcgcttcat 544
>ref|XM_464504.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1305 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Plus Query: 396 gccgcctcggacttctccttcgcgtt 421 |||||| ||||||||||||||||||| Sbjct: 295 gccgccgcggacttctccttcgcgtt 320
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 396 gccgcctcggacttctccttcgcgtt 421 |||||| ||||||||||||||||||| Sbjct: 5577685 gccgccgcggacttctccttcgcgtt 5577660
>dbj|AP004812.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0026H03 Length = 151827 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 396 gccgcctcggacttctccttcgcgtt 421 |||||| ||||||||||||||||||| Sbjct: 122420 gccgccgcggacttctccttcgcgtt 122395
>dbj|AP004869.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0419A09 Length = 168064 Score = 44.1 bits (22), Expect = 0.53 Identities = 25/26 (96%) Strand = Plus / Minus Query: 396 gccgcctcggacttctccttcgcgtt 421 |||||| ||||||||||||||||||| Sbjct: 5421 gccgccgcggacttctccttcgcgtt 5396
>emb|AL031729.16|HS159A19 Human DNA sequence from clone RP1-159A19 on chromosome 1p36.13 Contains the gene for a novel protein, the FGR gene for Gardner-Rasheed feline sarcoma viral (v-fgr) oncogene homolog, a novel pseudogene, the 3' end of a novel gene and two CpG islands, complete sequence Length = 125287 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 ggaagccgcctcggacttctc 412 ||||||||||||||||||||| Sbjct: 19310 ggaagccgcctcggacttctc 19290
>gb|AC007252.2| Homo sapiens BAC clone RP11-407F2 from 2, complete sequence Length = 159952 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 caccccaagtaacagtttcaa 163 ||||||||||||||||||||| Sbjct: 67725 caccccaagtaacagtttcaa 67745
>emb|Z13983.1|HSCFGR51 Homo sapiens 5'UTR of c-fgr gene (exons M1 & M4) Length = 2277 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 ggaagccgcctcggacttctc 412 ||||||||||||||||||||| Sbjct: 1977 ggaagccgcctcggacttctc 1957
>gb|CP000111.1| Prochlorococcus marinus str. MIT 9312, complete genome Length = 1709204 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 552 gggaaaggaaatcaaaagat 571 |||||||||||||||||||| Sbjct: 290170 gggaaaggaaatcaaaagat 290151
>emb|CR925759.7| Wallaby DNA sequence from clone MEKBa-346C2, complete sequence Length = 146757 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 484 ggtacggctgaacagaggca 503 |||||||||||||||||||| Sbjct: 99526 ggtacggctgaacagaggca 99545
>gb|AC003989.1| Homo sapiens BAC clone CTB-7J15 from 7, complete sequence Length = 118103 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 29 acaggaaaaaagttaagcag 48 |||||||||||||||||||| Sbjct: 82014 acaggaaaaaagttaagcag 82033
>gb|AC092888.4| Homo sapiens 12 BAC RP11-597C7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 169071 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 19 cataaaagtgacaggaaaaa 38 |||||||||||||||||||| Sbjct: 89122 cataaaagtgacaggaaaaa 89141
>gb|AC023192.8| Homo sapiens chromosome 18, clone RP11-562H1, complete sequence Length = 167944 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 cacaaatctttcagtttactacag 189 |||||| ||||||||||||||||| Sbjct: 7746 cacaaaactttcagtttactacag 7723
>gb|AC090989.8| Homo sapiens chromosome 18, clone RP11-265C19, complete sequence Length = 108799 Score = 40.1 bits (20), Expect = 8.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 166 cacaaatctttcagtttactacag 189 |||||| ||||||||||||||||| Sbjct: 25928 cacaaaactttcagtttactacag 25951
>gb|AE017282.2| Methylococcus capsulatus str. Bath, complete genome Length = 3304561 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 244 gccagggggcaacggcgccg 263 |||||||||||||||||||| Sbjct: 2739671 gccagggggcaacggcgccg 2739652
>gb|AC153849.8| Mus musculus BAC RP23-97L11 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205220 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 aaattcatttctacagggaa 556 |||||||||||||||||||| Sbjct: 197727 aaattcatttctacagggaa 197708
>gb|AC158660.4| Mus musculus 6 BAC RP23-387H1 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 199439 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 537 aaattcatttctacagggaa 556 |||||||||||||||||||| Sbjct: 27658 aaattcatttctacagggaa 27639
>emb|CR926135.12| Zebrafish DNA sequence from clone DKEY-220F10 in linkage group 20, complete sequence Length = 73888 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 29 acaggaaaaaagttaagcag 48 |||||||||||||||||||| Sbjct: 57854 acaggaaaaaagttaagcag 57835
>emb|X93557.1|OAES3EXN2 O.aureus estrogen receptor gene (exon 2; 3' end) and joined CDS Length = 366 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 aaaagtgacaggaaaaaagt 41 |||||||||||||||||||| Sbjct: 331 aaaagtgacaggaaaaaagt 350
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 8.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 gccgccgccggaagccgcct 402 |||||||||||||||||||| Sbjct: 3008199 gccgccgccggaagccgcct 3008218 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,471,585 Number of Sequences: 3902068 Number of extensions: 4471585 Number of successful extensions: 77525 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 77238 Number of HSP's gapped (non-prelim): 255 length of query: 612 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 589 effective length of database: 17,143,297,704 effective search space: 10097402347656 effective search space used: 10097402347656 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
