Clone Information

BLAST Search Result

Clone Name	rbaal34l03
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_476696.1\| Oryza sativa (japonica cultivar-group), mRNA	391	e-105
2	dbj\|AK120286.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	383	e-103
3	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	283	3e-73
4	dbj\|AP003847.3\| Oryza sativa (japonica cultivar-group) genomic D...	283	3e-73
5	gb\|AY110157.1\| Zea mays CL7807_-1 mRNA sequence	240	4e-60
6	dbj\|AB088126.1\| Oryza glumipatula DNA, retroposon p-SINE1-r807, ...	70	9e-09
7	dbj\|AP006407.1\| Lotus japonicus genomic DNA, chromosome 4, clone...	70	9e-09
8	gb\|AC097174.2\| Oryza sativa (japonica cultivar-group) chromosome...	48	0.032
9	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	48	0.032
10	ref\|NM_125086.2\| Arabidopsis thaliana catalytic/ lactoylglutathi...	42	2.0
11	emb\|Z47810.1\|CEF45E10 Caenorhabditis elegans Cosmid F45E10, comp...	42	2.0
12	emb\|AL365276.9\| Human DNA sequence from clone RP11-274C15 on chr...	42	2.0
13	gb\|BT024587.1\| Arabidopsis thaliana At5g57040 mRNA, complete cds	42	2.0
14	gb\|AY088499.1\| Arabidopsis thaliana clone 7233 mRNA, complete se...	42	2.0
15	dbj\|AB024035.1\| Arabidopsis thaliana genomic DNA, chromosome 5, ...	42	2.0
16	gb\|AC163032.5\| Mus musculus BAC clone RP24-144G20 from chromosom...	40	7.9
17	ref\|NM_012761.1\| Rattus norvegicus Sp4 transcription factor (Sp4...	40	7.9
18	ref\|NM_009239.2\| Mus musculus trans-acting transcription factor ...	40	7.9
19	gb\|BC076630.1\| Mus musculus trans-acting transcription factor 4,...	40	7.9
20	ref\|XM_539462.2\| PREDICTED: Canis familiaris similar to Sp4 tran...	40	7.9
21	ref\|XM_857849.1\| PREDICTED: Canis familiaris similar to Sp4 tran...	40	7.9
22	gb\|AC007030.3\| Homo sapiens PAC clone RP5-1112I4 from 7, complet...	40	7.9
23	gb\|AC163034.4\| Mus musculus BAC clone RP23-394C13 from chromosom...	40	7.9
24	emb\|AL589651.8\| Mouse DNA sequence from clone RP23-138F20 on chr...	40	7.9
25	gb\|AC135849.6\| Pan troglodytes clone ptb-33n14, complete sequence	40	7.9
26	dbj\|AP007169.1\| Aspergillus oryzae RIB40 genomic DNA, SC038	40	7.9
27	gb\|AC090338.6\| Homo sapiens chromosome 18, clone RP11-704C2, com...	40	7.9
28	gb\|AC015617.8\| Homo sapiens, clone RP11-45H23, complete sequence	40	7.9
29	gb\|AC124172.4\| Mus musculus BAC clone RP23-168P24 from chromosom...	40	7.9
30	gb\|AC000085.5\| Homo sapiens Chromosome 22q11.2 BAC Clone 72f8 In...	40	7.9
31	gb\|AC000073.1\| Homo sapiens Chromosome 22q11.2 Cosmid Clone 19d3...	40	7.9
32	dbj\|AB221633.1\| Mus musculus cDNA pooled tissues:(tissue_type=br...	40	7.9
33	ref\|XM_579348.1\| PREDICTED: Rattus norvegicus Sp4 transcription ...	40	7.9
34	dbj\|BA000040.2\| Bradyrhizobium japonicum USDA 110 DNA, complete ...	40	7.9
35	emb\|BX323818.8\| Zebrafish DNA sequence from clone DKEY-48H7 in l...	40	7.9
36	gb\|U62522.1\|MMU62522 Mus musculus zinc finger transcription fact...	40	7.9
37	gb\|U07610.1\|SENDHF1B Rattus norvegicus Sprague-Dawley zinc finge...	40	7.9

>ref|XM_476696.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 495

 Score =  391 bits (197), Expect = e-105
 Identities = 326/369 (88%)
 Strand = Plus / Minus

                                                                       
Query: 213 ctacacttgtgtaaattccaacgcgtttccatccgggtctcgtgcaaagatcgctggacg 272
           |||||||||||| || ||||  || ||||| |||||||| || ||||| || ||||| ||
Sbjct: 495 ctacacttgtgtgaactccagtgcatttccgtccgggtcccgagcaaatattgctggtcg 436

                                                                       
Query: 273 cccagatttgctgagtgtgtagctgatttccgctttgtcaaagatttctttcaacttcaa 332
           ||| |||||||| ||||||||  ||||| | |||||||||||||||||||| ||||||||
Sbjct: 435 ccctgatttgctaagtgtgtatttgattccggctttgtcaaagatttcttttaacttcaa 376

                                                                       
Query: 333 gacatctctgattgctatacaggtatgacgatcacgcccgccatgctctgggcgtcctgt 392
            |||||| |||| || |||||||||||||||||||| || |||||||||||||| || ||
Sbjct: 375 cacatctttgatcgccatacaggtatgacgatcacgtcccccatgctctgggcgcccagt 316

                                                                       
Query: 393 cagtggatccggatttggcagctccatcaagtggatcatctcagaaccaacccagagcca 452
           || |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 315 caatggatcgggatttggcagctccatcaagtgaatcatctcagaaccaacccagagcca 256

                                                                       
Query: 453 agcacctctgtaaggaagcttgtcatttggcctagcaggattcacctttagaccaaggat 512
           ||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| | 
Sbjct: 255 agcacctctgtaaggaagcttgtcggttggcctagcaggattcaccttaagaccaagcag 196

                                                                       
Query: 513 gtcctggtagaatgccatcgacctttcaagattttcacatagtattccaacatggtgcat 572
            || | |||||| ||||| ||||||||||||||||||||||| || ||||||||||| ||
Sbjct: 195 atctttgtagaaggccattgacctttcaagattttcacataggatcccaacatggtgaat 136

                    
Query: 573 actaacaac 581
            ||||||||
Sbjct: 135 gctaacaac 127

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>dbj|AK120286.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050B15, full
           insert sequence
          Length = 902

 Score =  383 bits (193), Expect = e-103
 Identities = 316/357 (88%)
 Strand = Plus / Minus

                                                                       
Query: 213 ctacacttgtgtaaattccaacgcgtttccatccgggtctcgtgcaaagatcgctggacg 272
           |||||||||||| || ||||  || ||||| |||||||| || ||||| || ||||| ||
Sbjct: 625 ctacacttgtgtgaactccagtgcatttccgtccgggtcccgagcaaatattgctggtcg 566

                                                                       
Query: 273 cccagatttgctgagtgtgtagctgatttccgctttgtcaaagatttctttcaacttcaa 332
           ||| |||||||| ||||||||  ||||| | |||||||||||||||||||| ||||||||
Sbjct: 565 ccctgatttgctaagtgtgtatttgattccggctttgtcaaagatttcttttaacttcaa 506

                                                                       
Query: 333 gacatctctgattgctatacaggtatgacgatcacgcccgccatgctctgggcgtcctgt 392
            |||||| |||| || |||||||||||||||||||| || |||||||||||||| || ||
Sbjct: 505 cacatctttgatcgccatacaggtatgacgatcacgtcccccatgctctgggcgcccagt 446

                                                                       
Query: 393 cagtggatccggatttggcagctccatcaagtggatcatctcagaaccaacccagagcca 452
           || |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 445 caatggatcgggatttggcagctccatcaagtgaatcatctcagaaccaacccagagcca 386

                                                                       
Query: 453 agcacctctgtaaggaagcttgtcatttggcctagcaggattcacctttagaccaaggat 512
           ||||||||||||||||||||||||  |||||||||||||||||||||| |||||||| | 
Sbjct: 385 agcacctctgtaaggaagcttgtcggttggcctagcaggattcaccttaagaccaagcag 326

                                                                    
Query: 513 gtcctggtagaatgccatcgacctttcaagattttcacatagtattccaacatggtg 569
            || | |||||| ||||| ||||||||||||||||||||||| || |||||||||||
Sbjct: 325 atctttgtagaaggccattgacctttcaagattttcacataggatcccaacatggtg 269

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  283 bits (143), Expect = 3e-73
 Identities = 188/203 (92%)
 Strand = Plus / Plus

                                                                           
Query: 304     gctttgtcaaagatttctttcaacttcaagacatctctgattgctatacaggtatgacga 363
               |||||||||||||||||||| |||||||| |||||| |||| || |||||||||||||||
Sbjct: 3277895 gctttgtcaaagatttcttttaacttcaacacatctttgatcgccatacaggtatgacga 3277954

                                                                           
Query: 364     tcacgcccgccatgctctgggcgtcctgtcagtggatccggatttggcagctccatcaag 423
               ||||| || |||||||||||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 3277955 tcacgtcccccatgctctgggcgcccagtcaatggatcgggatttggcagctccatcaag 3278014

                                                                           
Query: 424     tggatcatctcagaaccaacccagagccaagcacctctgtaaggaagcttgtcatttggc 483
               || ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 3278015 tgaatcatctcagaaccaacccagagccaagcacctctgtaaggaagcttgtcggttggc 3278074

                                      
Query: 484     ctagcaggattcacctttagacc 506
               ||||||||||||||||| |||||
Sbjct: 3278075 ctagcaggattcaccttaagacc 3278097



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                           
Query: 519     gtagaatgccatcgacctttcaagattttcacatagtattccaacatggtgcatactaac 578
               |||||| ||||| ||||||||||||||||||||||| || ||||||||||| || |||||
Sbjct: 3278227 gtagaaggccattgacctttcaagattttcacataggatcccaacatggtgaatgctaac 3278286

                  
Query: 579     aac 581
               |||
Sbjct: 3278287 aac 3278289



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                           
Query: 213     ctacacttgtgtaaattccaacgcgtttccatccgggtctcgtgcaaagatcgctggacg 272
               |||||||||||| || ||||  || ||||| |||||||| || ||||| || ||||| ||
Sbjct: 3277232 ctacacttgtgtgaactccagtgcatttccgtccgggtcccgagcaaatattgctggtcg 3277291

                                    
Query: 273     cccagatttgctgagtgtgta 293
               ||| |||||||| ||||||||
Sbjct: 3277292 ccctgatttgctaagtgtgta 3277312

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>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1714_H10
          Length = 191580

 Score =  283 bits (143), Expect = 3e-73
 Identities = 188/203 (92%)
 Strand = Plus / Plus

                                                                         
Query: 304   gctttgtcaaagatttctttcaacttcaagacatctctgattgctatacaggtatgacga 363
             |||||||||||||||||||| |||||||| |||||| |||| || |||||||||||||||
Sbjct: 87588 gctttgtcaaagatttcttttaacttcaacacatctttgatcgccatacaggtatgacga 87647

                                                                         
Query: 364   tcacgcccgccatgctctgggcgtcctgtcagtggatccggatttggcagctccatcaag 423
             ||||| || |||||||||||||| || |||| |||||| |||||||||||||||||||||
Sbjct: 87648 tcacgtcccccatgctctgggcgcccagtcaatggatcgggatttggcagctccatcaag 87707

                                                                         
Query: 424   tggatcatctcagaaccaacccagagccaagcacctctgtaaggaagcttgtcatttggc 483
             || ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 87708 tgaatcatctcagaaccaacccagagccaagcacctctgtaaggaagcttgtcggttggc 87767

                                    
Query: 484   ctagcaggattcacctttagacc 506
             ||||||||||||||||| |||||
Sbjct: 87768 ctagcaggattcaccttaagacc 87790



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                         
Query: 519   gtagaatgccatcgacctttcaagattttcacatagtattccaacatggtgcatactaac 578
             |||||| ||||| ||||||||||||||||||||||| || ||||||||||| || |||||
Sbjct: 87920 gtagaaggccattgacctttcaagattttcacataggatcccaacatggtgaatgctaac 87979

                
Query: 579   aac 581
             |||
Sbjct: 87980 aac 87982



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 68/81 (83%)
 Strand = Plus / Plus

                                                                         
Query: 213   ctacacttgtgtaaattccaacgcgtttccatccgggtctcgtgcaaagatcgctggacg 272
             |||||||||||| || ||||  || ||||| |||||||| || ||||| || ||||| ||
Sbjct: 86925 ctacacttgtgtgaactccagtgcatttccgtccgggtcccgagcaaatattgctggtcg 86984

                                  
Query: 273   cccagatttgctgagtgtgta 293
             ||| |||||||| ||||||||
Sbjct: 86985 ccctgatttgctaagtgtgta 87005

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>gb|AY110157.1| Zea mays CL7807_-1 mRNA sequence
          Length = 672

 Score =  240 bits (121), Expect = 4e-60
 Identities = 281/336 (83%)
 Strand = Plus / Minus

                                                                       
Query: 210 ttgctacacttgtgtaaattccaacgcgtttccatccgggtctcgtgcaaagatcgctgg 269
           |||||||||||| || || ||||||||||| || || ||||||| |||||||||||||| 
Sbjct: 490 ttgctacacttgggtgaactccaacgcgttcccgtctgggtctcttgcaaagatcgctgc 431

                                                                       
Query: 270 acgcccagatttgctgagtgtgtagctgatttccgctttgtcaaagatttctttcaactt 329
            | ||| |||||||| ||||||||||||||| | ||||  ||      |||||||| |||
Sbjct: 430 cctcccggatttgcttagtgtgtagctgattccagcttcatcnnnnncttctttcagctt 371

                                                                       
Query: 330 caagacatctctgattgctatacaggtatgacgatcacgcccgccatgctctgggcgtcc 389
           ||  |||||||| || |||||||||||||| |||||||| ||||| ||||| ||||||||
Sbjct: 370 cagaacatctctaatcgctatacaggtatgccgatcacgtccgccgtgctcggggcgtcc 311

                                                                       
Query: 390 tgtcagtggatccggatttggcagctccatcaagtggatcatctcagaaccaacccagag 449
            ||||  ||||| ||||| ||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 310 ggtcaacggatcaggattcggcagctccatcaggtggatcatctcagaacccacccagag 251

                                                                       
Query: 450 ccaagcacctctgtaaggaagcttgtcatttggcctagcaggattcacctttagaccaag 509
           |||||| || ||||| || |||||||| ||||||| ||| ||||||||| | ||||| ||
Sbjct: 250 ccaagcgcccctgtacgggagcttgtcgtttggccgagctggattcaccctcagacccag 191

                                               
Query: 510 gatgtcctggtagaatgccatcgacctttcaagatt 545
            | ||||| |||||| ||||  ||||| ||||||||
Sbjct: 190 taggtccttgtagaacgccagtgacctctcaagatt 155

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>dbj|AB088126.1| Oryza glumipatula DNA, retroposon p-SINE1-r807, repeat sequence
          Length = 588

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 56/63 (88%)
 Strand = Plus / Plus

                                                                       
Query: 519 gtagaatgccatcgacctttcaagattttcacatagtattccaacatggtgcatactaac 578
           |||||| ||||| |||||||| |||||||||||||| || ||||||||||| || |||||
Sbjct: 81  gtagaaggccattgacctttcgagattttcacataggatcccaacatggtgaatgctaac 140

              
Query: 579 aac 581
           |||
Sbjct: 141 aac 143

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>dbj|AP006407.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT23O19, TM0297a,
             complete sequence
          Length = 61781

 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Minus

                                                                         
Query: 403   ggatttggcagctccatcaagtggatcatctcagaaccaacccagagccaagcacctctg 462
             |||||||| ||||||||||  || |||||||| || || ||||| | |||||||||||||
Sbjct: 56975 ggatttggaagctccatcagatgaatcatctcggagcctacccacaaccaagcacctctg 56916

                                    
Query: 463   taaggaagcttgtcatttggcct 485
             || |||||||| |||| ||||||
Sbjct: 56915 tatggaagcttatcatgtggcct 56893



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 43/47 (91%)
 Strand = Plus / Minus

                                                            
Query: 535   ctttcaagattttcacatagtattccaacatggtgcatactaacaac 581
             ||||| || ||||||||||| |||||||||||||| |||||||||||
Sbjct: 56745 ctttccaggttttcacatagaattccaacatggtgaatactaacaac 56699

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>gb|AC097174.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1111_A10,
             complete sequence
          Length = 155106

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 414   ctccatcaagtggatcatctcagaaccaacccagagccaagcacctct 461
             |||| |||| ||||||| ||| ||||||| ||||||||||||| ||||
Sbjct: 38895 ctccgtcaaatggatcacctctgaaccaatccagagccaagcatctct 38848

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                               
Query: 414     ctccatcaagtggatcatctcagaaccaacccagagccaagcacctct 461
               |||| |||| ||||||| ||| ||||||| ||||||||||||| ||||
Sbjct: 5124392 ctccgtcaaatggatcacctctgaaccaatccagagccaagcatctct 5124345

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>ref|NM_125086.2| Arabidopsis thaliana catalytic/ lactoylglutathione lyase AT5G57040
           mRNA, complete cds
          Length = 854

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                       
Query: 396 tggatccggatttggcagctccatcaagtggatcatctcagaaccaacccagagccaagc 455
           |||||| |||||||| |||||||| |  || ||||| || ||||| ||||| | ||| ||
Sbjct: 541 tggatctggatttggaagctccataagatgaatcatttctgaacctacccataaccatgc 482

                                
Query: 456 acctctgtaaggaagcttgtc 476
            ||||| || |||||||||||
Sbjct: 481 tcctctatatggaagcttgtc 461

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>emb|Z47810.1|CEF45E10 Caenorhabditis elegans Cosmid F45E10, complete sequence
          Length = 17928

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 560   caacatggtgcatactaacaa 580
             |||||||||||||||||||||
Sbjct: 11704 caacatggtgcatactaacaa 11724

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>emb|AL365276.9| Human DNA sequence from clone RP11-274C15 on chromosome 6, complete
           sequence
          Length = 158737

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 456 acctctgtaaggaagcttgtcattt 480
           |||||||||| ||||||||||||||
Sbjct: 765 acctctgtaatgaagcttgtcattt 741

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>gb|BT024587.1| Arabidopsis thaliana At5g57040 mRNA, complete cds
          Length = 594

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                       
Query: 396 tggatccggatttggcagctccatcaagtggatcatctcagaaccaacccagagccaagc 455
           |||||| |||||||| |||||||| |  || ||||| || ||||| ||||| | ||| ||
Sbjct: 411 tggatctggatttggaagctccataagatgaatcatttctgaacctacccataaccatgc 352

                                
Query: 456 acctctgtaaggaagcttgtc 476
            ||||| || |||||||||||
Sbjct: 351 tcctctatatggaagcttgtc 331

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>gb|AY088499.1| Arabidopsis thaliana clone 7233 mRNA, complete sequence
          Length = 781

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 66/81 (81%)
 Strand = Plus / Minus

                                                                       
Query: 396 tggatccggatttggcagctccatcaagtggatcatctcagaaccaacccagagccaagc 455
           |||||| |||||||| |||||||| |  || ||||| || ||||| ||||| | ||| ||
Sbjct: 468 tggatctggatttggaagctccataagatgaatcatttctgaacctacccataaccatgc 409

                                
Query: 456 acctctgtaaggaagcttgtc 476
            ||||| || |||||||||||
Sbjct: 408 tcctctatatggaagcttgtc 388

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>dbj|AB024035.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17
          Length = 78423

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 66/81 (81%)
 Strand = Plus / Plus

                                                                         
Query: 396   tggatccggatttggcagctccatcaagtggatcatctcagaaccaacccagagccaagc 455
             |||||| |||||||| |||||||| |  || ||||| || ||||| ||||| | ||| ||
Sbjct: 68780 tggatctggatttggaagctccataagatgaatcatttctgaacctacccataaccatgc 68839

                                  
Query: 456   acctctgtaaggaagcttgtc 476
              ||||| || |||||||||||
Sbjct: 68840 tcctctatatggaagcttgtc 68860

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>gb|AC163032.5| Mus musculus BAC clone RP24-144G20 from chromosome 12, complete
             sequence
          Length = 186416

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   agagccaagcacctctgtaa 465
             ||||||||||||||||||||
Sbjct: 41540 agagccaagcacctctgtaa 41521

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>ref|NM_012761.1| Rattus norvegicus Sp4 transcription factor (Sp4), mRNA
          Length = 3489

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  agagccaagcacctctgtaa 465
            ||||||||||||||||||||
Sbjct: 2412 agagccaagcacctctgtaa 2393

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>ref|NM_009239.2| Mus musculus trans-acting transcription factor 4 (Sp4), mRNA
          Length = 5699

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  agagccaagcacctctgtaa 465
            ||||||||||||||||||||
Sbjct: 2401 agagccaagcacctctgtaa 2382

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>gb|BC076630.1| Mus musculus trans-acting transcription factor 4, mRNA (cDNA clone
            MGC:100176 IMAGE:30637762), complete cds
          Length = 5450

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  agagccaagcacctctgtaa 465
            ||||||||||||||||||||
Sbjct: 2396 agagccaagcacctctgtaa 2377

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>ref|XM_539462.2| PREDICTED: Canis familiaris similar to Sp4 transcription factor,
            transcript variant 1 (LOC482345), mRNA
          Length = 3021

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  agagccaagcacctctgtaa 465
            ||||||||||||||||||||
Sbjct: 2480 agagccaagcacctctgtaa 2461

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>ref|XM_857849.1| PREDICTED: Canis familiaris similar to Sp4 transcription factor,
            transcript variant 3 (LOC482345), mRNA
          Length = 2973

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  agagccaagcacctctgtaa 465
            ||||||||||||||||||||
Sbjct: 2432 agagccaagcacctctgtaa 2413

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>gb|AC007030.3| Homo sapiens PAC clone RP5-1112I4 from 7, complete sequence
          Length = 117853

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 403   ggatttggcagctccatcaa 422
             ||||||||||||||||||||
Sbjct: 76131 ggatttggcagctccatcaa 76150

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>gb|AC163034.4| Mus musculus BAC clone RP23-394C13 from chromosome 12, complete sequence
          Length = 187877

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 446    agagccaagcacctctgtaa 465
              ||||||||||||||||||||
Sbjct: 150796 agagccaagcacctctgtaa 150777

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>emb|AL589651.8| Mouse DNA sequence from clone RP23-138F20 on chromosome 13 Contains five
              genes for olfactory receptors, a novel gene, the H1f5 gene
              for H1 histone family member 5, three genes and one
              pseudogene for H2a histone family members, four genes for
              H2b, two genes for H4, and two genes for H3 histone family
              members and seven CpG islands, complete sequence
          Length = 222823

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    aacttcaagacatctctgat 344
              ||||||||||||||||||||
Sbjct: 211032 aacttcaagacatctctgat 211013

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>gb|AC135849.6| Pan troglodytes clone ptb-33n14, complete sequence
          Length = 72820

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 314  agatttctttcaacttcaag 333
            ||||||||||||||||||||
Sbjct: 6832 agatttctttcaacttcaag 6851

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>dbj|AP007169.1| Aspergillus oryzae RIB40 genomic DNA, SC038
          Length = 1725576

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 500    ttagaccaaggatgtcctgg 519
              ||||||||||||||||||||
Sbjct: 750654 ttagaccaaggatgtcctgg 750635

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>gb|AC090338.6| Homo sapiens chromosome 18, clone RP11-704C2, complete sequence
          Length = 200525

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 313   aagatttctttcaacttcaa 332
             ||||||||||||||||||||
Sbjct: 87974 aagatttctttcaacttcaa 87955

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>gb|AC015617.8| Homo sapiens, clone RP11-45H23, complete sequence
          Length = 160541

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 313    aagatttctttcaacttcaa 332
              ||||||||||||||||||||
Sbjct: 157444 aagatttctttcaacttcaa 157463

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>gb|AC124172.4| Mus musculus BAC clone RP23-168P24 from chromosome 1, complete sequence
          Length = 192946

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 306   tttgtcaaagatttctttca 325
             ||||||||||||||||||||
Sbjct: 75700 tttgtcaaagatttctttca 75681

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>gb|AC000085.5| Homo sapiens Chromosome 22q11.2 BAC Clone 72f8 In DGCR Region, complete
             sequence
          Length = 100152

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   agatttctttcaacttcaag 333
             ||||||||||||||||||||
Sbjct: 86985 agatttctttcaacttcaag 86966

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>gb|AC000073.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 19d3 In DGCR Region,
             complete sequence
          Length = 39706

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 314   agatttctttcaacttcaag 333
             ||||||||||||||||||||
Sbjct: 22997 agatttctttcaacttcaag 22978

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>dbj|AB221633.1| Mus musculus cDNA pooled tissues:(tissue_type=brain,dev_stage=8-12
            days
            neonate,strain=BALB/c),(tissue_type=testis,
            dev_stage=adult, strain=C57BL/6J), clone:V01Y034C09
          Length = 2349

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  agagccaagcacctctgtaa 465
            ||||||||||||||||||||
Sbjct: 2265 agagccaagcacctctgtaa 2246

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>ref|XM_579348.1| PREDICTED: Rattus norvegicus Sp4 transcription factor (Sp4), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  agagccaagcacctctgtaa 465
            ||||||||||||||||||||
Sbjct: 2381 agagccaagcacctctgtaa 2362

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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 357     atgacgatcacgcccgccat 376
               ||||||||||||||||||||
Sbjct: 1281043 atgacgatcacgcccgccat 1281062

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>emb|BX323818.8| Zebrafish DNA sequence from clone DKEY-48H7 in linkage group 4, complete
              sequence
          Length = 196712

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 439    ccaacccagagccaagcacctctg 462
              ||||||||||||||||||| ||||
Sbjct: 113914 ccaacccagagccaagcacatctg 113937

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>gb|U62522.1|MMU62522 Mus musculus zinc finger transcription factor Sp4 mRNA, complete cds
          Length = 2678

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  agagccaagcacctctgtaa 465
            ||||||||||||||||||||
Sbjct: 2401 agagccaagcacctctgtaa 2382

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>gb|U07610.1|SENDHF1B Rattus norvegicus Sprague-Dawley zinc finger protein (HF-1b) mRNA,
            complete cds
          Length = 3489

 Score = 40.1 bits (20), Expect = 7.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 446  agagccaagcacctctgtaa 465
            ||||||||||||||||||||
Sbjct: 2412 agagccaagcacctctgtaa 2393


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,902,051
Number of Sequences: 3902068
Number of extensions: 4902051
Number of successful extensions: 80400
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 80291
Number of HSP's gapped (non-prelim): 108
length of query: 581
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 558
effective length of database: 17,143,297,704
effective search space: 9565960118832
effective search space used: 9565960118832
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result