ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal34l02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 48.1 bits (24), Expect = 0.038 Identities = 24/24 (100%) Strand = Plus / Plus Query: 93 ctttacaagaatatatcctattta 116 |||||||||||||||||||||||| Sbjct: 13694087 ctttacaagaatatatcctattta 13694110
>dbj|AK067128.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098G17, full insert sequence Length = 2791 Score = 48.1 bits (24), Expect = 0.038 Identities = 24/24 (100%) Strand = Plus / Minus Query: 93 ctttacaagaatatatcctattta 116 |||||||||||||||||||||||| Sbjct: 2734 ctttacaagaatatatcctattta 2711
>emb|AL731609.2|OSJN00259 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079M09, complete sequence Length = 187359 Score = 48.1 bits (24), Expect = 0.038 Identities = 24/24 (100%) Strand = Plus / Plus Query: 93 ctttacaagaatatatcctattta 116 |||||||||||||||||||||||| Sbjct: 88695 ctttacaagaatatatcctattta 88718
>dbj|AB018443.1| Oryza sativa (japonica cultivar-group) mRNA for nonphototrophic hypocotyl 1b, complete cds Length = 3134 Score = 48.1 bits (24), Expect = 0.038 Identities = 24/24 (100%) Strand = Plus / Minus Query: 93 ctttacaagaatatatcctattta 116 |||||||||||||||||||||||| Sbjct: 3084 ctttacaagaatatatcctattta 3061
>gb|AC106799.3| Homo sapiens chromosome 5 clone RP11-445O3, complete sequence Length = 176095 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 308 aaaacataaatcaagaaagtaa 329 |||||||||||||||||||||| Sbjct: 48347 aaaacataaatcaagaaagtaa 48326
>gb|AC011065.6| Drosophila melanogaster, chromosome 2L, region 33B-33B, BAC clone BACR37P12, complete sequence Length = 181103 Score = 44.1 bits (22), Expect = 0.59 Identities = 28/30 (93%) Strand = Plus / Plus Query: 591 tttcatctttctttgcattgaagtacatac 620 ||||| |||| ||||||||||||||||||| Sbjct: 14132 tttcaactttgtttgcattgaagtacatac 14161
>gb|AC093199.1| Drosophila melanogaster, chromosome 2L, region 33A-33A, BAC clone BACR05B13, complete sequence Length = 168641 Score = 44.1 bits (22), Expect = 0.59 Identities = 28/30 (93%) Strand = Plus / Minus Query: 591 tttcatctttctttgcattgaagtacatac 620 ||||| |||| ||||||||||||||||||| Sbjct: 5528 tttcaactttgtttgcattgaagtacatac 5499
>gb|AE003634.2| Drosophila melanogaster chromosome 2L, section 43 of 83 of the complete sequence Length = 265341 Score = 44.1 bits (22), Expect = 0.59 Identities = 28/30 (93%) Strand = Plus / Plus Query: 591 tttcatctttctttgcattgaagtacatac 620 ||||| |||| ||||||||||||||||||| Sbjct: 48901 tttcaactttgtttgcattgaagtacatac 48930
>gb|AC006240.1|AC006240 Drosophila melanogaster, chromosome 2L, region 33A3-33B2, P1 clones DS06189, DS04362, and DS07071, complete sequence Length = 170056 Score = 44.1 bits (22), Expect = 0.59 Identities = 28/30 (93%) Strand = Plus / Minus Query: 591 tttcatctttctttgcattgaagtacatac 620 ||||| |||| ||||||||||||||||||| Sbjct: 90877 tttcaactttgtttgcattgaagtacatac 90848
>gb|AY728219.1| Rhyacotriton variegatus mitochondrion, complete genome Length = 21606 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 559 actatatttttaatcattataaata 583 |||||||||||||| |||||||||| Sbjct: 4468 actatatttttaataattataaata 4492
>gb|AC016250.5| Homo sapiens chromosome 8 clone RP11-516P9, complete sequence Length = 199569 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 563 tatttttaatcattataaata 583 ||||||||||||||||||||| Sbjct: 136215 tatttttaatcattataaata 136195
>gb|AC091849.2| Homo sapiens chromosome 5 clone CTD-2245E15, complete sequence Length = 131371 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 89 gaaactttacaagaatatatc 109 ||||||||||||||||||||| Sbjct: 92642 gaaactttacaagaatatatc 92622
>gb|AC073927.9| Homo sapiens BAC clone RP11-604B16 from 7, complete sequence Length = 185676 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 561 tatatttttaatcattataaa 581 ||||||||||||||||||||| Sbjct: 88401 tatatttttaatcattataaa 88421
>emb|BX065314.1|CNS09MK6 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC49AF06 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 777 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 ataaagaagaaaacataaatc 319 ||||||||||||||||||||| Sbjct: 27 ataaagaagaaaacataaatc 7
>emb|BX049591.1|CNS09AFF Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAC25CE01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 379 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 ataaagaagaaaacataaatc 319 ||||||||||||||||||||| Sbjct: 23 ataaagaagaaaacataaatc 3
>emb|BX032351.1|CNS08X4J Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA48AG11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 989 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 299 ataaagaagaaaacataaatc 319 ||||||||||||||||||||| Sbjct: 44 ataaagaagaaaacataaatc 24
>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H Length = 59748 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 517 aaaaacgtcttacattttggt 537 ||||||||||||||||||||| Sbjct: 20416 aaaaacgtcttacattttggt 20436
>gb|AC154233.3| Mus musculus BAC clone RP24-345G9 from chromosome 16, complete sequence Length = 178248 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 66 accataccatcttcaggaaga 86 ||||||||||||||||||||| Sbjct: 25302 accataccatcttcaggaaga 25282
>gb|AC025207.5| Homo sapiens chromosome 8, clone RP11-193J8, complete sequence Length = 157375 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tatttttaatcattataaata 583 ||||||||||||||||||||| Sbjct: 100505 tatttttaatcattataaata 100525
>gb|AC103853.2| Homo sapiens chromosome 8, clone RP11-642D21, complete sequence Length = 178736 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 354 ttgattatacaagattgcttt 374 ||||||||||||||||||||| Sbjct: 32046 ttgattatacaagattgcttt 32066
>gb|AC069220.11| Homo sapiens 3 BAC RP11-115B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 157448 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 6 tattttaaagaagcaaacttt 26 ||||||||||||||||||||| Sbjct: 35429 tattttaaagaagcaaacttt 35409
>gb|AC000054.10| Homo sapiens chromosome 3 clone p856 map 3q26, complete sequence Length = 64211 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 6 tattttaaagaagcaaacttt 26 ||||||||||||||||||||| Sbjct: 51844 tattttaaagaagcaaacttt 51864
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gtataaaatactactccctcc 474 ||||||||||||||||||||| Sbjct: 13680536 gtataaaatactactccctcc 13680516
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 619 actttccaaatttgaacaaaatttt 643 |||||| |||||||||||||||||| Sbjct: 1677344 actttcaaaatttgaacaaaatttt 1677368
>dbj|AP004150.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1007_D04 Length = 125503 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 619 actttccaaatttgaacaaaatttt 643 |||||| |||||||||||||||||| Sbjct: 114447 actttcaaaatttgaacaaaatttt 114471
>gb|AF130358.2|AF130358 Homo sapiens chromosome 21q11.2 PAC 90B5, complete sequence Length = 197778 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 619 actttccaaatttgaacaaaa 639 ||||||||||||||||||||| Sbjct: 67619 actttccaaatttgaacaaaa 67599
>dbj|AP004679.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0021N09 Length = 156565 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 454 gtataaaatactactccctcc 474 ||||||||||||||||||||| Sbjct: 87869 gtataaaatactactccctcc 87849
>dbj|BS000008.1| Pan troglodytes chromosome 22 clone:RP43-011E05, map 22, complete sequences Length = 104995 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 619 actttccaaatttgaacaaaa 639 ||||||||||||||||||||| Sbjct: 48617 actttccaaatttgaacaaaa 48597
>gb|AC006556.3|AC006556 Homo sapiens, clone hRPK.37_A_1, complete sequence Length = 156833 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 619 actttccaaatttgaacaaaa 639 ||||||||||||||||||||| Sbjct: 59112 actttccaaatttgaacaaaa 59132
>dbj|AP001660.1| Homo sapiens genomic DNA, chromosome 21q, section 4/105 Length = 340000 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 619 actttccaaatttgaacaaaa 639 ||||||||||||||||||||| Sbjct: 282572 actttccaaatttgaacaaaa 282552
>gb|AY916019.1| Rhyacotriton variegatus NADH dehydrogenase subunit 1 (ND1) gene, partial cds; tRNA-Ile, tRNA-Gln, and tRNA-Met genes, complete sequence; NADH dehydrogenase subunit 2 (ND2) gene, complete cds; tRNA-Trp, tRNA-Ala, tRNA-Asn, tRNA-Cys, and tRNA-Tyr genes, complete sequence; and cytochrome c oxidase subunit I (COI) gene, partial cds; mitochondrial Length = 2038 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 559 actatatttttaatcattataaata 583 |||||||||||||| |||||||||| Sbjct: 1228 actatatttttaataattataaata 1252
>gb|AC003658.1|AC003658 Homo sapiens Xp22 BAC GS-607H18 (Genome Systems Human BAC library) complete sequence Length = 119393 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 295 ggctataaagaagaaaacata 315 ||||||||||||||||||||| Sbjct: 2366 ggctataaagaagaaaacata 2386
>emb|AL953895.8| Zebrafish DNA sequence from clone CH211-231M14 in linkage group 7, complete sequence Length = 167156 Score = 42.1 bits (21), Expect = 2.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 555 tttgactatatttttaatcattata 579 |||||||||||||||| |||||||| Sbjct: 51961 tttgactatatttttattcattata 51937
>emb|AL078615.2|HS98L15 Homo sapiens chromosome 21 PAC RPCIP704L1598Q2, complete sequence Length = 116189 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 619 actttccaaatttgaacaaaa 639 ||||||||||||||||||||| Sbjct: 94006 actttccaaatttgaacaaaa 93986
>dbj|AP003548.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1448A5 Length = 178420 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 563 tatttttaatcattataaata 583 ||||||||||||||||||||| Sbjct: 102118 tatttttaatcattataaata 102138
>ref|NM_001031525.1| Gallus gallus protein-L-isoaspartate (D-aspartate) O-methyltransferase (PCMT1), mRNA Length = 2982 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tcttcaggaagagtgaaact 94 |||||||||||||||||||| Sbjct: 449 tcttcaggaagagtgaaact 468
>gb|AE014832.1| Plasmodium falciparum 3D7 chromosome 10 section 4 of 7 of the complete sequence Length = 258658 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 ataaagaagaaaacataaat 318 |||||||||||||||||||| Sbjct: 131343 ataaagaagaaaacataaat 131324
>gb|AF241729.2| Homo sapiens chromosome X clone RP5-817K2 map p11.4, complete sequence Length = 141582 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 582 taccaatcatttcatctttctttg 605 ||||||||||| |||||||||||| Sbjct: 14605 taccaatcattgcatctttctttg 14628
>gb|AF241728.2| Homo sapiens chromosome X clone RP4-646N3 map p11.4, complete sequence Length = 133506 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 582 taccaatcatttcatctttctttg 605 ||||||||||| |||||||||||| Sbjct: 122271 taccaatcattgcatctttctttg 122294
>gb|AC132486.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0473H02, complete sequence Length = 141027 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 tactccctccctaacaaaat 484 |||||||||||||||||||| Sbjct: 84430 tactccctccctaacaaaat 84411
>gb|AC111128.24| Mus musculus chromosome 18, clone RP23-338I7, complete sequence Length = 209784 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 aatcattataaataccaatc 589 |||||||||||||||||||| Sbjct: 203689 aatcattataaataccaatc 203670
>gb|AC133945.2| Mus musculus chromosome 18 clone RP24-146N1, complete sequence Length = 139630 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 aatcattataaataccaatc 589 |||||||||||||||||||| Sbjct: 34318 aatcattataaataccaatc 34299
>gb|AC125397.5| Mus musculus BAC clone RP24-206J16 from chromosome 2, complete sequence Length = 134401 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 108 tcctatttactggatacattaagc 131 |||||||||||| ||||||||||| Sbjct: 63503 tcctatttactgtatacattaagc 63480
>gb|AC012081.16| Homo sapiens 3 BAC RP11-416O18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178317 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 actatatttttaatcattat 578 |||||||||||||||||||| Sbjct: 66639 actatatttttaatcattat 66620
>gb|AC099603.15| Mus musculus chromosome 12, clone RP23-333M19, complete sequence Length = 206836 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 626 aaatttgaacaaaattttgg 645 |||||||||||||||||||| Sbjct: 72888 aaatttgaacaaaattttgg 72869
>ref|XM_741140.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000873.01.0) partial mRNA Length = 4866 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 590 atttcatctttctttgcatt 609 |||||||||||||||||||| Sbjct: 1841 atttcatctttctttgcatt 1822
>gb|AC103645.6| Mus musculus chromosome 19, clone RP24-510J20, complete sequence Length = 209224 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ataaagaagaaaacataaat 318 |||||||||||||||||||| Sbjct: 153097 ataaagaagaaaacataaat 153116
>ref|XM_670731.1| Plasmodium berghei strain ANKA hypothetical protein (PB102255.00.0) partial mRNA Length = 1107 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 305 aagaaaacataaatcaagaa 324 |||||||||||||||||||| Sbjct: 836 aagaaaacataaatcaagaa 855
>gb|AC109245.11| Mus musculus chromosome 1, clone RP23-344F24, complete sequence Length = 206211 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 568 ttaatcattataaataccaa 587 |||||||||||||||||||| Sbjct: 132642 ttaatcattataaataccaa 132623
>gb|AC152176.5| Medicago truncatula clone mth2-65c4, complete sequence Length = 161536 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 565 tttttaatcattataaatac 584 |||||||||||||||||||| Sbjct: 80977 tttttaatcattataaatac 80958
>emb|AL360157.12| Human DNA sequence from clone RP11-801I18 on chromosome 6q14.2-16.1 Contains part of a novel gene, complete sequence Length = 197431 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 190 acacttccttctatcacaca 209 |||||||||||||||||||| Sbjct: 161963 acacttccttctatcacaca 161982
>gb|AF491780.1| Homo sapiens neuregulin 1 (NRG1) gene, partial cds, alternatively spliced Length = 1285452 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ataaagaagaaaacataaat 318 |||||||||||||||||||| Sbjct: 398942 ataaagaagaaaacataaat 398961
>emb|AL162212.12| Human DNA sequence from clone RP11-209P2 on chromosome 13 Contains a rab9 effector p40 (RAB9P40) pseudogene, complete sequence Length = 124418 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 305 aagaaaacataaatcaagaaagta 328 ||||||| |||||||||||||||| Sbjct: 3258 aagaaaaaataaatcaagaaagta 3235
>emb|AL121748.7|HSA342D11 Human DNA sequence from clone RP11-342D11 on chromosome 10 Contains the 3' end of the NRP1 gene for neuropilin 1 and two novel genes, complete sequence Length = 178183 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 306 agaaaacataaatcaagaaa 325 |||||||||||||||||||| Sbjct: 81653 agaaaacataaatcaagaaa 81634
>emb|AL080312.14|HSJ1025A1 Human DNA sequence from clone RP5-1025A1 on chromosome 20p11.21-11.23 Contains the 5' part of the ACAS2L gene for acetyl-Coenzyme A synthetase (AMP forming)-like, the VSX1 gene for visual system homeobox 1 (zebrafish) homolog (CHX10-like), variants L1 and S1 and four CpG islands, complete sequence Length = 94664 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 aaagtaatgtatttcagaat 342 |||||||||||||||||||| Sbjct: 85931 aaagtaatgtatttcagaat 85912
>emb|AL031074.1|HS143G3 Human DNA sequence from clone RP1-143G3 on chromosome Xq24-25, complete sequence Length = 99204 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 562 atatttttaatcattataaa 581 |||||||||||||||||||| Sbjct: 54251 atatttttaatcattataaa 54270
>emb|BX022398.1|CNS08PG2 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 3-PRIME end of clone FK0AAA34BC02 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 884 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 ataaagaagaaaacataaat 318 |||||||||||||||||||| Sbjct: 20 ataaagaagaaaacataaat 1
>emb|X59720.2|SCCHRIII S.cerevisiae chromosome III complete DNA sequence Length = 316613 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 301 aaagaagaaaacataaatcaagaa 324 |||||||||||||||||| ||||| Sbjct: 145679 aaagaagaaaacataaatgaagaa 145702
>gb|AC157577.6| Mus musculus chromosome 1, clone RP24-145K21, complete sequence Length = 169199 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 568 ttaatcattataaataccaa 587 |||||||||||||||||||| Sbjct: 57560 ttaatcattataaataccaa 57541
>emb|AL353865.1|ATT10D17 Arabidopsis thaliana DNA chromosome 3, BAC clone T10D17 Length = 79646 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 617 atactttccaaatttgaaca 636 |||||||||||||||||||| Sbjct: 34525 atactttccaaatttgaaca 34544
>emb|AJ851619.1| Gallus gallus mRNA for hypothetical protein, clone 11o11 Length = 2982 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 75 tcttcaggaagagtgaaact 94 |||||||||||||||||||| Sbjct: 449 tcttcaggaagagtgaaact 468
>emb|AL713925.10| Mouse DNA sequence from clone RP23-298B18 on chromosome 11, complete sequence Length = 81699 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 aaagaagaaaacataaatcaagaa 324 ||||||||||||| |||||||||| Sbjct: 68399 aaagaagaaaacaaaaatcaagaa 68376
>gb|AC156608.10| Mus musculus chromosome 8, clone RP23-303A11, complete sequence Length = 229633 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 323 aaagtaatgtatttcagaat 342 |||||||||||||||||||| Sbjct: 63922 aaagtaatgtatttcagaat 63903
>gb|AC025455.7| Homo sapiens chromosome 5 clone CTD-2195L15, complete sequence Length = 68372 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 acataaatcaagaaagtaat 330 |||||||||||||||||||| Sbjct: 33640 acataaatcaagaaagtaat 33621
>gb|AC104029.5| Homo sapiens chromosome 8, clone RP11-478B14, complete sequence Length = 177443 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 ataaagaagaaaacataaat 318 |||||||||||||||||||| Sbjct: 2793 ataaagaagaaaacataaat 2774
>gb|AC008951.6| Homo sapiens chromosome 5 clone CTD-2337A12, complete sequence Length = 124151 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 actatatttttaatcattat 578 |||||||||||||||||||| Sbjct: 38335 actatatttttaatcattat 38316
>emb|AL935056.18| Mouse DNA sequence from clone RP23-185F7 on chromosome 2, complete sequence Length = 146086 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 565 tttttaatcattataaataccaat 588 |||||||||||||| ||||||||| Sbjct: 134802 tttttaatcattatcaataccaat 134825
>gb|AC122707.2| Homo sapiens chromosome 5 clone RP11-158J3, complete sequence Length = 180483 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 311 acataaatcaagaaagtaat 330 |||||||||||||||||||| Sbjct: 744 acataaatcaagaaagtaat 725
>emb|BX546459.13| Zebrafish DNA sequence from clone RP71-15I6 in linkage group 2, complete sequence Length = 151492 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 ttagagtttgactatatttt 568 |||||||||||||||||||| Sbjct: 22728 ttagagtttgactatatttt 22709
>gb|AC068931.6| Homo sapiens chromosome 8, clone RP11-650B11, complete sequence Length = 101474 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 299 ataaagaagaaaacataaat 318 |||||||||||||||||||| Sbjct: 58370 ataaagaagaaaacataaat 58351
>gb|AC093521.3| Homo sapiens chromosome 5 clone RP11-152P24, complete sequence Length = 143970 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 547 aattagagtttgactatattttta 570 |||||||||||||||||| ||||| Sbjct: 112069 aattagagtttgactataatttta 112046
>gb|AC104826.5| Homo sapiens BAC clone RP11-775M3 from 4, complete sequence Length = 138604 Score = 40.1 bits (20), Expect = 9.2 Identities = 26/28 (92%) Strand = Plus / Plus Query: 558 gactatatttttaatcattataaatacc 585 ||||||||||||| |||||||| ||||| Sbjct: 54006 gactatatttttattcattatatatacc 54033
>gb|AC008006.10| Homo sapiens chromosome 18, clone RP11-233K20, complete sequence Length = 164076 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 aaagaagaaaacataaatca 320 |||||||||||||||||||| Sbjct: 92615 aaagaagaaaacataaatca 92596
>gb|AF314193.1| Drosophila melanogaster Toutatis (tou) gene, complete cds Length = 39574 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 225 ttatttggttaagaaccatt 244 |||||||||||||||||||| Sbjct: 18267 ttatttggttaagaaccatt 18286
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI, complete sequence Length = 1813164 Score = 40.1 bits (20), Expect = 9.2 Identities = 29/32 (90%) Strand = Plus / Minus Query: 184 aaggccacacttccttctatcacacaggacat 215 |||||||||||||||| ||||| |||||||| Sbjct: 1165825 aaggccacacttccttatatcaagcaggacat 1165794
>dbj|AK050013.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730001N09 product:unclassifiable, full insert sequence Length = 2864 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 565 tttttaatcattataaataccaat 588 |||||||||||||| ||||||||| Sbjct: 573 tttttaatcattatcaataccaat 550
>tpg|BK000383.1| TPA: TPA_exp: Homo sapiens neuregulin 1 isoform (NRG1) gene, alternatively spliced, complete cds Length = 1421559 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 299 ataaagaagaaaacataaat 318 |||||||||||||||||||| Sbjct: 398942 ataaagaagaaaacataaat 398961
>gb|AC181984.1| Pan troglodytes chromosome X clone CH251-244H4 map human ortholog p11.4, complete sequence Length = 184116 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 582 taccaatcatttcatctttctttg 605 ||||||||||| |||||||||||| Sbjct: 170381 taccaatcattgcatctttctttg 170404
>gb|AC022212.4|AC022212 Homo sapiens BAC clone RP11-708E9 from Xq23, complete sequence Length = 187313 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 582 taccaatcatttcatctttctttg 605 ||||||||||| |||||||||||| Sbjct: 88270 taccaatcattgcatctttctttg 88293
>gb|AC006983.4|AC006983 Homo sapiens BAC clone RP11-70G12 from Y, complete sequence Length = 180345 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 actatatttttaatcattat 578 |||||||||||||||||||| Sbjct: 177017 actatatttttaatcattat 176998
>emb|BX640587.7| Zebrafish DNA sequence from clone CH211-194J9 in linkage group 6, complete sequence Length = 192743 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 549 ttagagtttgactatatttt 568 |||||||||||||||||||| Sbjct: 140248 ttagagtttgactatatttt 140229
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 465 tactccctccctaacaaaat 484 |||||||||||||||||||| Sbjct: 5762056 tactccctccctaacaaaat 5762037
>gb|AC011696.4|AC011696 Drosophila melanogaster, chromosome 2R, region 48A-48C, BAC clone BACR35F01, complete sequence Length = 170869 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ttatttggttaagaaccatt 244 |||||||||||||||||||| Sbjct: 15418 ttatttggttaagaaccatt 15399
>gb|AC007473.10|AC007473 Drosophila melanogaster, chromosome 2R, region 48A-48B, BAC clone BACR38D12, complete sequence Length = 171831 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ttatttggttaagaaccatt 244 |||||||||||||||||||| Sbjct: 55737 ttatttggttaagaaccatt 55718
>gb|AC098583.2| Homo sapiens BAC clone RP11-10G12 from 4, complete sequence Length = 127148 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 301 aaagaagaaaacataaatcaagaa 324 |||||||||||||||||| ||||| Sbjct: 15810 aaagaagaaaacataaattaagaa 15787
>gb|AC078881.5| Homo sapiens BAC clone RP11-130F10 from 4, complete sequence Length = 171068 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 tataaagaagaaaacataaatcaa 321 ||||||||||||||| |||||||| Sbjct: 161119 tataaagaagaaaacttaaatcaa 161096
>gb|AC019018.9|AC019018 Arabidopsis thaliana chromosome 1 BAC F14G24 genomic sequence, complete sequence Length = 126253 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 626 aaatttgaacaaaattttgg 645 |||||||||||||||||||| Sbjct: 111031 aaatttgaacaaaattttgg 111012
>gb|AC015974.10| Homo sapiens BAC clone RP11-467A18 from 2, complete sequence Length = 196544 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 actatatttttaatcattat 578 |||||||||||||||||||| Sbjct: 128654 actatatttttaatcattat 128635
>gb|AC006991.3|AC006991 Homo sapiens BAC clone RP11-270H4 from Y, complete sequence Length = 173242 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 actatatttttaatcattat 578 |||||||||||||||||||| Sbjct: 168149 actatatttttaatcattat 168168
>emb|BX005056.7| Zebrafish DNA sequence from clone CH211-77A11 in linkage group 7, complete sequence Length = 173708 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 555 tttgactatatttttaatcattat 578 |||||||||||||||| ||||||| Sbjct: 65065 tttgactatatttttattcattat 65042
>gb|AC022520.2|AC022520 Arabidopsis thaliana chromosome I BAC F8L10 genomic sequence, complete sequence Length = 110611 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 626 aaatttgaacaaaattttgg 645 |||||||||||||||||||| Sbjct: 83973 aaatttgaacaaaattttgg 83992
>ref|NG_004755.1| Homo sapiens chromosome Y palindromes P1, P2, P3 and inverted repeat IR2 (P1-P2-P3-IR2@) on chromosome Y Length = 4538292 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 559 actatatttttaatcattat 578 |||||||||||||||||||| Sbjct: 4426927 actatatttttaatcattat 4426946 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 559 actatatttttaatcattat 578 |||||||||||||||||||| Sbjct: 1621917 actatatttttaatcattat 1621898
>gb|AC015447.8|AC015447 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence Length = 108365 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 aactttattttaaagaagca 20 |||||||||||||||||||| Sbjct: 61632 aactttattttaaagaagca 61613
>gb|AC087241.11| Homo sapiens 12 BAC RP11-268P4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 146000 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 596 tctttctttgcattgaagta 615 |||||||||||||||||||| Sbjct: 68905 tctttctttgcattgaagta 68886
>ref|NM_211306.1| Eremothecium gossypii AFR404Cp (AFR404C), mRNA Length = 3669 Score = 40.1 bits (20), Expect = 9.2 Identities = 29/32 (90%) Strand = Plus / Plus Query: 184 aaggccacacttccttctatcacacaggacat 215 |||||||||||||||| ||||| |||||||| Sbjct: 793 aaggccacacttccttatatcaagcaggacat 824
>gb|AE003825.3| Drosophila melanogaster chromosome 2R, section 25 of 73 of the complete sequence Length = 261690 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 225 ttatttggttaagaaccatt 244 |||||||||||||||||||| Sbjct: 133910 ttatttggttaagaaccatt 133891
>dbj|AP001183.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-679I18, complete sequence Length = 174527 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ctttattttaaagaagcaaacttt 26 |||||||||||||||| ||||||| Sbjct: 27897 ctttattttaaagaaggaaacttt 27920
>dbj|AB090243.1| Bombyx mori og gene for molybdenum cofactor sulfurase, complete cds Length = 15323 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 551 agagtttgactatattttta 570 |||||||||||||||||||| Sbjct: 11141 agagtttgactatattttta 11122
>emb|CT571273.12| Mouse DNA sequence from clone RP23-48L21 on chromosome 16, complete sequence Length = 142519 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 524 tcttacattttggtcagagg 543 |||||||||||||||||||| Sbjct: 6538 tcttacattttggtcagagg 6557
>emb|AL928796.9| Mouse DNA sequence from clone RP23-150I5 on chromosome 2, complete sequence Length = 203793 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 108 tcctatttactggatacattaagc 131 |||||||||||| ||||||||||| Sbjct: 103069 tcctatttactgtatacattaagc 103092
>emb|CT033765.2| Medicago truncatula chromosome 5 clone mth2-105d20, COMPLETE SEQUENCE Length = 131814 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 455 tataaaatactactccctcc 474 |||||||||||||||||||| Sbjct: 24727 tataaaatactactccctcc 24746
>emb|AL773601.11| Zebrafish DNA sequence from clone CH211-199O1, complete sequence Length = 201299 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 tatttttaatcattataaat 582 |||||||||||||||||||| Sbjct: 14339 tatttttaatcattataaat 14358
>dbj|AP003041.3| Homo sapiens genomic DNA, chromosome 11 clone:RP11-567M21, complete sequence Length = 188172 Score = 40.1 bits (20), Expect = 9.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 3 ctttattttaaagaagcaaacttt 26 |||||||||||||||| ||||||| Sbjct: 175781 ctttattttaaagaaggaaacttt 175804
>dbj|AP006118.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT47H13, TM0201, complete sequence Length = 79882 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 564 atttttaatcattataaata 583 |||||||||||||||||||| Sbjct: 74761 atttttaatcattataaata 74742
>dbj|AB066511.1| Macaca fascicularis brain cDNA clone:QmoA-10231, full insert sequence Length = 2041 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 596 tctttctttgcattgaagta 615 |||||||||||||||||||| Sbjct: 1241 tctttctttgcattgaagta 1260
>dbj|AP002381.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-475M20, complete sequence Length = 203868 Score = 40.1 bits (20), Expect = 9.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 313 ataaatcaagaaagtaatgt 332 |||||||||||||||||||| Sbjct: 129865 ataaatcaagaaagtaatgt 129846 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,513,426 Number of Sequences: 3902068 Number of extensions: 7513426 Number of successful extensions: 165544 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 106 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 165022 Number of HSP's gapped (non-prelim): 522 length of query: 676 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 653 effective length of database: 17,143,297,704 effective search space: 11194573400712 effective search space used: 11194573400712 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
