ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbaal35a01 |
|---|---|
| Clone Library Name | barley_pub |
>AFLR_ASPPA (P43651) Aflatoxin biosynthesis regulatory protein| Length = 444 Score = 32.7 bits (73), Expect = 0.35 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 14/73 (19%) Frame = +3 Query: 54 DKGSCSSHP--------------RGKEMLARGCPPDEIGVRTSPAADLVPSFLHNVTVIV 191 + GSCS+ P M+ C +E R AA LV S LH V +V Sbjct: 331 NSGSCSNSPATVSSGCLTEERVLHHPSMVGEDCVDEEDQPRV--AAQLVLSELHRVQSLV 388 Query: 192 CSLSRRLQRAGDD 230 L++RLQ GDD Sbjct: 389 NLLAKRLQEGGDD 401
>AFLR_ASPFL (P41765) Aflatoxin biosynthesis regulatory protein| Length = 437 Score = 32.7 bits (73), Expect = 0.35 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 14/73 (19%) Frame = +3 Query: 54 DKGSCSSHPRG--------------KEMLARGCPPDEIGVRTSPAADLVPSFLHNVTVIV 191 + GSCS+ P M+ C +E R AA LV S LH V +V Sbjct: 331 NSGSCSNSPATVSSGCLTEERVLHLPSMMGEDCVDEEDQPRV--AAQLVLSELHRVQSLV 388 Query: 192 CSLSRRLQRAGDD 230 L++RLQ GDD Sbjct: 389 NLLAKRLQEGGDD 401
>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like| protein) Length = 349 Score = 31.6 bits (70), Expect = 0.78 Identities = 17/49 (34%), Positives = 20/49 (40%), Gaps = 4/49 (8%) Frame = -2 Query: 338 GDLDPPGGVHLHTMQAPSSSTCQPPAAE----GEHHAHKIIISSPLESP 204 G + PPGG H +P S T PP + G H SP SP Sbjct: 151 GSMTPPGGAHSPKSSSPVSPTTSPPGSTTPPGGAHSPKSSSAVSPATSP 199
>VGLD_HHV1A (P36318) Glycoprotein D precursor| Length = 394 Score = 30.4 bits (67), Expect = 1.7 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Frame = -2 Query: 329 DPPGGVHLHTMQAPSSSTCQPPA-------AEGEHHAHKIIISSPLESPGEAADDNRHIV 171 DPPG ++ +QA QPP+ A E +++++P E+P + + Sbjct: 55 DPPGVRRVYHIQAGLPDPFQPPSLPITVYYAVLERACRSVLLNAPSEAPQIVRGGSEDVR 114 Query: 170 KETWN*IRSWRRPNTN 123 K+ +N +W R N Sbjct: 115 KQPYNLTIAWFRMGGN 130
>VGLD_HHV1H (P06476) Glycoprotein D precursor| Length = 393 Score = 30.0 bits (66), Expect = 2.3 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 6/75 (8%) Frame = -2 Query: 329 DPPGGVHLHTMQAPSSSTCQPPA------AEGEHHAHKIIISSPLESPGEAADDNRHIVK 168 DPPG ++ +QA + QPP+ E +++++P E+P + + K Sbjct: 55 DPPGVRRVYHIQAGLPNPFQPPSLPITVYRRVERACRSVLLNAPSEAPQIVRGASEDVRK 114 Query: 167 ETWN*IRSWRRPNTN 123 + +N +W R N Sbjct: 115 QPYNLTIAWFRMGGN 129
>VGLD_HHV1P (P57083) Glycoprotein D precursor| Length = 394 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Frame = -2 Query: 329 DPPGGVHLHTMQAPSSSTCQPPA-------AEGEHHAHKIIISSPLESPGEAADDNRHIV 171 DPPG ++ +QA QPP+ A E +++++P E+P + + Sbjct: 55 DPPGVRRVYHIQAGLPDPFQPPSLPITVYYAVLERACRSVLLNAPSEAPQIVRGASEDVR 114 Query: 170 KETWN*IRSWRRPNTN 123 K+ +N +W R N Sbjct: 115 KQPYNLTIAWFRMGGN 130
>VGLD_HHV11 (Q69091) Glycoprotein D precursor| Length = 394 Score = 30.0 bits (66), Expect = 2.3 Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 7/76 (9%) Frame = -2 Query: 329 DPPGGVHLHTMQAPSSSTCQPPA-------AEGEHHAHKIIISSPLESPGEAADDNRHIV 171 DPPG ++ +QA QPP+ A E +++++P E+P + + Sbjct: 55 DPPGVRRVYHIQAGLPDPFQPPSLPITVYYAVLERACRSVLLNAPSEAPQIVRGASEDVR 114 Query: 170 KETWN*IRSWRRPNTN 123 K+ +N +W R N Sbjct: 115 KQPYNLTIAWFRMGGN 130
>TOM1_NEUCR (Q9P4Z1) E3 ubiquitin protein ligase TOM1-like protein (EC 6.3.2.-)| Length = 4065 Score = 30.0 bits (66), Expect = 2.3 Identities = 25/74 (33%), Positives = 30/74 (40%) Frame = -2 Query: 407 EEKAIDSSEAKQRSTNNADTS*IGDLDPPGGVHLHTMQAPSSSTCQPPAAEGEHHAHKII 228 EEKA EA A TS Q PS ST P AA G+ A + Sbjct: 3352 EEKAATEREAANAPEEQASTS-----TEQTPAQQEATQQPSEST--PAAASGQQPAQQDQ 3404 Query: 227 ISSPLESPGEAADD 186 + LE+P E AD+ Sbjct: 3405 ENKELEAPKEKADE 3418
>SFRS8_HUMAN (Q12872) Splicing factor, arginine/serine-rich 8 (Suppressor of| white apricot protein homolog) Length = 951 Score = 29.6 bits (65), Expect = 2.9 Identities = 15/43 (34%), Positives = 23/43 (53%) Frame = -2 Query: 293 APSSSTCQPPAAEGEHHAHKIIISSPLESPGEAADDNRHIVKE 165 +PS PAA H AH + SP+ES G + + +R + +E Sbjct: 870 SPSKQAAPRPAAPAAHSAHSASV-SPVESRGSSQERSRGVSQE 911
>VGLD_HHV2 (P03172) Glycoprotein D precursor| Length = 393 Score = 28.9 bits (63), Expect = 5.0 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 7/76 (9%) Frame = -2 Query: 329 DPPGGVHLHTMQAPSSSTCQPPA-------AEGEHHAHKIIISSPLESPGEAADDNRHIV 171 DPPG ++ +Q QPP+ A E +++ +P E+P + Sbjct: 55 DPPGVKRVYHIQPSLEDPFQPPSIPITVYYAVLERACRSVLLHAPSEAPQIVRGASDEAR 114 Query: 170 KETWN*IRSWRRPNTN 123 K T+N +W R N Sbjct: 115 KHTYNLTIAWYRMGDN 130
>UTY_PANTR (Q6B4Z3) Ubiquitously transcribed Y chromosome tetratricopeptide| repeat protein (Ubiquitously transcribed TPR protein on the Y chromosome) Length = 1079 Score = 28.9 bits (63), Expect = 5.0 Identities = 16/39 (41%), Positives = 21/39 (53%) Frame = +2 Query: 299 WCEDARHREDPDPQFKKYQHCWLISAWLLNYLWLFLPSC 415 WC D + P P FK++ H L ++W NY LPSC Sbjct: 1000 WC-DLSSLQPPPPGFKRFSHLSLPNSW--NY--RHLPSC 1033
>LAMC2_HUMAN (Q13753) Laminin gamma-2 chain precursor (Laminin 5 gamma 2| subunit) (Kalinin/nicein/epiligrin 100 kDa subunit) (Laminin B2t chain) (Cell-scattering factor 140 kDa subunit) (CSF 140 kDa subunit) (Large adhesive scatter factor 140 kDa subunit) Length = 1193 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +3 Query: 63 SCSSHPRGKEMLARGCPPDEIGVRTSPAAD 152 SCS P +E++ CPP G R AD Sbjct: 469 SCSVMPETEEVVCNNCPPGVTGARCELCAD 498
>LAMC2_MOUSE (Q61092) Laminin gamma-2 chain precursor (Laminin 5 gamma 2| subunit) (Kalinin/nicein/epiligrin 100 kDa subunit) (Laminin B2t chain) Length = 1191 Score = 28.5 bits (62), Expect = 6.6 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +3 Query: 63 SCSSHPRGKEMLARGCPPDEIGVRTSPAAD 152 SCS P +E++ CPP G R AD Sbjct: 469 SCSVMPETEEVVCNNCPPGVTGARCELCAD 498
>DPB2_KLULA (Q6CPH8) DNA polymerase epsilon subunit B (EC 2.7.7.7) (DNA| polymerase II subunit B) Length = 710 Score = 28.5 bits (62), Expect = 6.6 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%) Frame = -2 Query: 329 DPPGGVHLHTMQA-PSSSTCQPPA----AEGEHH--AHKIIISSPLESPGEAADD 186 DP G + LH QA P+ T P EG ++ ++ ++SS PGE +D Sbjct: 320 DPSGSIELHLQQAIPTKGTYYVPGCIVLVEGIYYTASNTFVVSSITHPPGEKRED 374
>KRUP_DROME (P07247) Protein krueppel| Length = 502 Score = 28.1 bits (61), Expect = 8.6 Identities = 15/41 (36%), Positives = 17/41 (41%) Frame = -2 Query: 326 PPGGVHLHTMQAPSSSTCQPPAAEGEHHAHKIIISSPLESP 204 PP G HLH+ A S P G+H PL SP Sbjct: 115 PPQGTHLHSPPASPHSPLSTPLGSGKH---------PLNSP 146
>GFO_ZYMMO (Q07982) Glucose--fructose oxidoreductase precursor (EC 1.1.99.28)| (GFOR) Length = 433 Score = 28.1 bits (61), Expect = 8.6 Identities = 13/48 (27%), Positives = 27/48 (56%) Frame = -2 Query: 263 AAEGEHHAHKIIISSPLESPGEAADDNRHIVKETWN*IRSWRRPNTNF 120 +A+ +H A +I + P+ SPGE + +++ + R+ R NT++ Sbjct: 378 SAQLDHLAEAVINNKPVRSPGEEGMQDVRLIQAIYEAARTGRPVNTDW 425
>PRRXL_RAT (Q62798) Paired-related homeobox protein-like 1 (Homeobox protein| DRG11) Length = 263 Score = 28.1 bits (61), Expect = 8.6 Identities = 11/46 (23%), Positives = 20/46 (43%) Frame = +3 Query: 15 IWFKRKLKNRVSMDKGSCSSHPRGKEMLARGCPPDEIGVRTSPAAD 152 +WF+ + ++G+ P KE +A PP + + P D Sbjct: 79 VWFQNRRAKWRKTERGASDQEPGAKEPMAEVTPPPVRNINSPPPGD 124
>PIN5_ORYSA (Q5VQY3) Probable auxin efflux carrier component 5 (OsPIN5)| Length = 426 Score = 28.1 bits (61), Expect = 8.6 Identities = 18/48 (37%), Positives = 24/48 (50%) Frame = -2 Query: 314 VHLHTMQAPSSSTCQPPAAEGEHHAHKIIISSPLESPGEAADDNRHIV 171 + L+ A S PP A E A KI SSP+++ AAD N + V Sbjct: 163 IFLYEYMAARRSASAPPPASSEGSA-KISPSSPVKAAAAAADTNGNAV 209 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,886,676 Number of Sequences: 219361 Number of extensions: 1392974 Number of successful extensions: 3700 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3602 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3694 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
