ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal34k13 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X82937.1|HVRNAJIP H.vulgare mRNA for jasmonate induced protein Length = 1334 Score = 835 bits (421), Expect = 0.0 Identities = 453/460 (98%), Gaps = 3/460 (0%) Strand = Plus / Minus Query: 1 catgaatacaatagtttcccgacaggggcggggggtattattttaggagtgcacactagg 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1290 catgaatacaatagtttcccgacaggggcggggggtattattttaggagtgcacactagg 1231 Query: 61 cacttacatactcacgacagtagtagctagcactaagagcagaagatagcatagcaaaga 120 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1230 cacttacatactcacgacagtagtagctamcactaagagcagaagatagcatagcaaaga 1171 Query: 121 tcatagtagtagcatgatcatgtttaaagttcagggtaattgtgcttaactaagacgagc 180 |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| Sbjct: 1170 tcatagtagtagcatgatca-gtttaaagttcagggtaattgtgcttaacta-gacgagc 1113 Query: 181 gagttcgagaccatgaggcataggcgccacacggcaaactgtaagcccgtctgttatctc 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1112 gagttcgagaccatgaggcataggcgccacacggcaaactgtaagcccgtctgttatctt 1053 Query: 241 caccttgctagttccactgctgaaaatcaagtcaagcagcgcacctgcagctatcccaat 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1052 caccttgctagttccactgctgaaaatcaagtcaagcagcgcacctgcagctatcccaat 993 Query: 301 gagcgcaccaattccaaaaccgacgactcctccaattaccgtgacagccgcagaancaat 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct: 992 gagcgcaccaattccaaaaccgacgactcctccaattaccgtgacagccgcagaagcaat 933 Query: 361 ttcgatgtctagtgctacgaatccagcttctacagcaatnagtaactatttctcccacct 420 ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| Sbjct: 932 ttcgatgtctagtgctacgaatccagcttctacagcagt-agtaactatttctcccacct 874 Query: 421 caaggttaactactgcagttaacgcatttactgaatccct 460 |||||||||||||||||||||||||||||||||||||||| Sbjct: 873 caaggttaactactgcagttaacgcatttactgaatccct 834
>ref|XM_215932.3| PREDICTED: Rattus norvegicus matrilin 4 (predicted) (Matn4_predicted), mRNA Length = 2236 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 180 cgagttcgagaccatgaggca 200 ||||||||||||||||||||| Sbjct: 253 cgagttcgagaccatgaggca 273
>emb|AL935148.22| Zebrafish DNA sequence from clone CH211-196G2 in linkage group 8, complete sequence Length = 195396 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 129 gtagcatgatcatgtttaaag 149 ||||||||||||||||||||| Sbjct: 34317 gtagcatgatcatgtttaaag 34297
>gb|U16816.1|LCU16816 Lates calcarifer growth hormone gene, promoter region and complete cds Length = 2396 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 tgatcatgtttaaagttcag 154 |||||||||||||||||||| Sbjct: 351 tgatcatgtttaaagttcag 370
>gb|AC113448.14| Mus musculus chromosome 15, clone RP23-1N23, complete sequence Length = 216103 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 taattgtgcttaactaagac 176 |||||||||||||||||||| Sbjct: 115225 taattgtgcttaactaagac 115206
>gb|AC160461.3| Mus musculus chromosome 15, clone RP23-174B9, complete sequence Length = 208877 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 157 taattgtgcttaactaagac 176 |||||||||||||||||||| Sbjct: 148546 taattgtgcttaactaagac 148527
>gb|AC017026.8| Homo sapiens BAC clone RP11-269L4 from 2, complete sequence Length = 37049 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 428 aactactgcagttaacgcatttac 451 ||||||||||||||| |||||||| Sbjct: 27724 aactactgcagttaatgcatttac 27747
>gb|U91319.1|HSU91319 Human chromosome 16p13.11 BAC clone CIT987SK-98H8 complete sequence Length = 125630 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 256 actgctgaaaatcaagtcaa 275 |||||||||||||||||||| Sbjct: 106508 actgctgaaaatcaagtcaa 106489 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,340,529 Number of Sequences: 3902068 Number of extensions: 3340529 Number of successful extensions: 55748 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 55732 Number of HSP's gapped (non-prelim): 13 length of query: 460 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 438 effective length of database: 17,147,199,772 effective search space: 7510473500136 effective search space used: 7510473500136 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
