ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34k02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY528719.1| Homo sapiens estrogen-related receptor gamma (ESR... 42 0.65
2emb|AL512626.8| Human DNA sequence from clone RP11-163I12 on chr... 42 0.65
3gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, c... 40 2.6
4gb|AC183611.2| Pan troglodytes BAC clone CH251-193J21 from chrom... 40 2.6
5gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome... 40 2.6
6emb|AL590966.10| Human DNA sequence from clone RP11-191N8 on chr... 40 2.6
7gb|BC111475.1| Xenopus laevis cDNA clone MGC:131050 IMAGE:798092... 40 2.6
8gb|AC161198.5| Mus musculus chromosome 15, clone RP23-34E23, com... 40 2.6
9dbj|AP004537.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 2.6
10emb|AL672228.14| Mouse DNA sequence from clone RP24-133C15 on ch... 40 2.6

>gb|AY528719.1| Homo sapiens estrogen-related receptor gamma (ESRRG) gene, complete cds
          Length = 590284

 Score = 42.1 bits (21), Expect = 0.65
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 64     aaaatttccaaaggatataca 84
              |||||||||||||||||||||
Sbjct: 145026 aaaatttccaaaggatataca 145006



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>emb|AL512626.8| Human DNA sequence from clone RP11-163I12 on chromosome 1 Contains part
             of the ESRRG gene for  estrogen-related receptor gamma,
             complete sequence
          Length = 106859

 Score = 42.1 bits (21), Expect = 0.65
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 64    aaaatttccaaaggatataca 84
             |||||||||||||||||||||
Sbjct: 81455 aaaatttccaaaggatataca 81475



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>gb|AC118646.23| Mus musculus chromosome 15, clone RP24-116A18, complete sequence
          Length = 205272

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 79    tatacacacattattatgtt 98
             ||||||||||||||||||||
Sbjct: 74200 tatacacacattattatgtt 74181



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>gb|AC183611.2| Pan troglodytes BAC clone CH251-193J21 from chromosome 4, complete
              sequence
          Length = 166748

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 79     tatacacacattattatgtttatt 102
              |||||||||| |||||||||||||
Sbjct: 143505 tatacacacagtattatgtttatt 143482



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>gb|AC122397.2| Mus musculus BAC clone RP24-90D21 from chromosome 15, complete sequence
          Length = 181742

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 126   aaagatccatgtcctaacac 145
             ||||||||||||||||||||
Sbjct: 71315 aaagatccatgtcctaacac 71334



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>emb|AL590966.10| Human DNA sequence from clone RP11-191N8 on chromosome 1 Contains the
              DUSP10 gene for dual specificity phosphatase 10 (DUSP10), a
              novel gene and a CpG island, complete sequence
          Length = 165588

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 79     tatacacacattattatgtttatt 102
              |||||||||| |||||||||||||
Sbjct: 128708 tatacacacagtattatgtttatt 128685



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>gb|BC111475.1| Xenopus laevis cDNA clone MGC:131050 IMAGE:7980920, complete cds
          Length = 2745

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 78   atatacacacattattatgtttat 101
            |||||||||||||||||| |||||
Sbjct: 2155 atatacacacattattatatttat 2132



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>gb|AC161198.5| Mus musculus chromosome 15, clone RP23-34E23, complete sequence
          Length = 237801

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 79     tatacacacattattatgtt 98
              ||||||||||||||||||||
Sbjct: 212869 tatacacacattattatgtt 212850



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>dbj|AP004537.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT04C07, TM0098a,
             complete sequence
          Length = 33254

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 61    cccaaaatttccaaaggata 80
             ||||||||||||||||||||
Sbjct: 30724 cccaaaatttccaaaggata 30705



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>emb|AL672228.14| Mouse DNA sequence from clone RP24-133C15 on chromosome 11, complete
              sequence
          Length = 162556

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 110    acaccagaaccctgaaaaag 129
              ||||||||||||||||||||
Sbjct: 123349 acaccagaaccctgaaaaag 123368


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,277,153
Number of Sequences: 3902068
Number of extensions: 2277153
Number of successful extensions: 148147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148129
Number of HSP's gapped (non-prelim): 18
length of query: 203
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 181
effective length of database: 17,147,199,772
effective search space: 3103643158732
effective search space used: 3103643158732
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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