ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal34j15 |
|---|---|
| Clone Library Name | barley_pub |
>RNQ1_YEAST (P25367) [PIN+] prion protein RNQ1 (Rich in asparagine and| glutamine protein 1) Length = 405 Score = 33.9 bits (76), Expect = 0.36 Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 11/119 (9%) Frame = -1 Query: 534 GNSDKSGGWGFLGAALSYVNPL--SYLRGNPTPSN---LDQLGNEGSQQYKPSSESQPLR 370 GN G G A S + + SYL G T SN +Q G QQY+ ++ + Sbjct: 252 GNGGYQQQQGQSGGAFSSLASMAQSYLGGGQTQSNQQQYNQQGQNNQQQYQQQGQNYQHQ 311 Query: 369 GDGSQQPATHSSG-NTLRRRPRQFGGNIHTLNSE---EQDPSDNRNVFWNG--NSTEFG 211 G QQ HSS + L + GN NS +Q ++ NG S E+G Sbjct: 312 QQGQQQQQGHSSSFSALASMASSYLGNNSNSNSSYGGQQQANEYGRPQQNGQQQSNEYG 370
>GALT6_MOUSE (Q8C7U7) Polypeptide N-acetylgalactosaminyltransferase 6 (EC| 2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase 6) (UDP-GalNAc:polypeptide N-acetylgalactosaminyltransferase 6) (Polypeptide GalNAc transferase 6) (GalNAc-T6) (pp-GaNTase 6) Length = 622 Score = 33.1 bits (74), Expect = 0.62 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = -1 Query: 420 NEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQF-GGNIHTLNSEEQDPSDNRN 244 N G QY + + LR + +Q H+SG+TL R QF G N EE + + ++ Sbjct: 529 NLGGNQYFEYTSQRDLRHNIGKQLCLHASGSTLGLRSCQFVGKNSRVPKDEEWELTQDQL 588 Query: 243 VFWNGNSTEFGGDEKK 196 + +G+ T +KK Sbjct: 589 IRNSGSGTCLTSQDKK 604
>FUS_HUMAN (P35637) RNA-binding protein FUS (Oncogene FUS) (Oncogene TLS)| (Translocated in liposarcoma protein) (POMp75) (75 kDa DNA-pairing protein) Length = 526 Score = 33.1 bits (74), Expect = 0.62 Identities = 31/104 (29%), Positives = 39/104 (37%), Gaps = 2/104 (1%) Frame = -1 Query: 534 GNSDKSGGWGFLGAALSYVNPLSYLRGNPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQ 355 GN D+SGG G G RG G G Y SS RG G Sbjct: 195 GNQDQSGGGGSGGYGQQD-------RGGRGRGGSGGGGGGGGGGYNRSSGGYEPRGRGGG 247 Query: 354 QPATHSSGNTLRRRPRQFGG--NIHTLNSEEQDPSDNRNVFWNG 229 + G + R +FGG + + + EQD SDN +F G Sbjct: 248 RGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQG 291
>PK2_DICDI (P28178) Protein kinase 2 (EC 2.7.11.1)| Length = 479 Score = 31.6 bits (70), Expect = 1.8 Identities = 24/96 (25%), Positives = 36/96 (37%), Gaps = 12/96 (12%) Frame = -1 Query: 450 PTPSNLDQLGNEGSQQY-----------KPSSESQPLRGDGSQQPATHSSGNTLRRRPRQ 304 PT NLD + QQ K + Q + +Q P T + T+ + Sbjct: 43 PTQQNLDNSAQQQQQQQQTATAAVSLDNKEQQQQQNIPAPATQTPITQTGTPTIEESQKN 102 Query: 303 F-GGNIHTLNSEEQDPSDNRNVFWNGNSTEFGGDEK 199 NI+ ++E D+ N NGN E G E+ Sbjct: 103 TDNNNINGASNEASSSPDSPNGSGNGNDDEDEGPEE 138
>STB1_YEAST (P42845) Protein STB1 (SIN3-binding protein 1)| Length = 420 Score = 31.6 bits (70), Expect = 1.8 Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 3/86 (3%) Frame = -1 Query: 489 LSYVNPLSYL-RGNPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQQP--ATHSSGNTLR 319 ++ ++P+ ++ + N PS+ + + SQQ KP E P S P H+S + R Sbjct: 85 MTVISPVKFVEKPNTPPSSRQRKAEDRSQQIKPRKEDTPSTPRASATPIILPHASSHYQR 144 Query: 318 RRPRQFGGNIHTLNSEEQDPSDNRNV 241 + F N+ ++N N+ Sbjct: 145 PHDKNFMTPKRNNNNSSNHSNNNNNI 170
>PRIA_LENED (Q01200) Protein priA precursor| Length = 258 Score = 31.2 bits (69), Expect = 2.3 Identities = 30/105 (28%), Positives = 38/105 (36%) Frame = +2 Query: 113 KHCCSTPQLFPTYLFPNIFNSNSPVTPYFFSSPPNSVEFPFQKTFLLSDGSCSSLFRV*M 292 K CC P PT P+ ++ +P P S PPN + +KT L S+ Sbjct: 51 KDCC-LPSGGPT---PSSTHTPTPTPPSGKSCPPNGWYWNDEKTCCLPKWPTSTPTPT-- 104 Query: 293 LPPNCRGRLLKVFPEL*VAGC*LPSPRRGWDSELGLYCCEPSFPS 427 P + P P GWD L CC PS PS Sbjct: 105 -PSSAHHTSTHTSPSSTPTSTPPPQCSNGWDWISSLLCCTPSSPS 148
>UBXD2_HUMAN (Q92575) UBX domain-containing protein 2| Length = 508 Score = 31.2 bits (69), Expect = 2.3 Identities = 21/84 (25%), Positives = 40/84 (47%) Frame = -1 Query: 468 SYLRGNPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFGGNI 289 ++L NP P+ + S+ P+S S+ + + ++ G+ ++ G I Sbjct: 431 NFLFSNPPPTQTS-VRVTSSEPPNPASSSKSEKREPVRKRVLEKRGDDFKKE-----GKI 484 Query: 288 HTLNSEEQDPSDNRNVFWNGNSTE 217 + L + QD ++ N WNGNST+ Sbjct: 485 YRLRT--QDDGEDENNTWNGNSTQ 506
>YL278_YEAST (Q05854) Putative transcriptional regulatory protein YLR278C| Length = 1341 Score = 31.2 bits (69), Expect = 2.3 Identities = 42/160 (26%), Positives = 62/160 (38%), Gaps = 9/160 (5%) Frame = -1 Query: 591 SVKVARHQSSLPSSDLDRTGNSDKSGGWGFLGAALSYVNPLSYLRGNPTPSNLDQLGNEG 412 S+ + +S+P S + + N SG F A +N +S N S LD L ++ Sbjct: 1156 SIPASFTSNSIPVS-VKQARNGSSSGDILFSNGAHDMINNISTWTNN---SVLDALNSKS 1211 Query: 411 ------SQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFGGNIHTLNSEEQDPSDN 250 Q +PSS S + QQ S N +Q + DPS N Sbjct: 1212 ILQTIFPQSQEPSSLSMDKQQQQHQQQNMCSENNVTANNFQQ----------TQNDPSYN 1261 Query: 249 RNVFW--NGNSTEFGGDE-KK*GVTGLLELNMLGNKYVGN 139 RN+F N ++ DE +K G +E N N + N Sbjct: 1262 RNLFMMSNQEGVQYNLDETEKNGPKTQVEANTSANLHFDN 1301
>CDRC_CLOAB (Q45812) Chemical-damaging agent resistance protein C| Length = 192 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/37 (37%), Positives = 22/37 (59%) Frame = -3 Query: 574 APIVIAIQRSGSYWEFRQVGWLGFSGGSVIICESIVL 464 A +V + R+GS W+F +G GF GG +C++ L Sbjct: 155 AIVVAELYRNGSEWKFNAIG-SGFEGGLAALCKNFGL 190
>FA61B_XENTR (Q566L7) Protein FAM61B homolog| Length = 382 Score = 30.8 bits (68), Expect = 3.1 Identities = 21/74 (28%), Positives = 31/74 (41%) Frame = -1 Query: 426 LGNEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFGGNIHTLNSEEQDPSDNR 247 + G +Q P S+ PL + P + + RR PR+ GN T N + NR Sbjct: 179 VNQRGIRQSGPQSQPAPLNVPPAAAPVLGTVNDENRRPPRRRSGNRRTRN---RSRGQNR 235 Query: 246 NVFWNGNSTEFGGD 205 N+ +F GD Sbjct: 236 PTTVKENAIKFEGD 249
>FUS_BOVIN (Q28009) RNA-binding protein FUS (Pigpen protein)| Length = 512 Score = 30.8 bits (68), Expect = 3.1 Identities = 31/104 (29%), Positives = 40/104 (38%), Gaps = 2/104 (1%) Frame = -1 Query: 534 GNSDKSGGWGFLGAALSYVNPLSYLRGNPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQ 355 GN D+SGG+G G RG G G Y SS RG G Sbjct: 192 GNQDQSGGYG--GGQQD--------RGGR--------GRGGGGGYNRSSGGYEPRGRGGG 233 Query: 354 QPATHSSGNTLRRRPRQFGG--NIHTLNSEEQDPSDNRNVFWNG 229 + G + R +FGG + + + EQD SDN +F G Sbjct: 234 RGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQG 277
>GLGA2_GEOMG (Q39QT6) Glycogen synthase 2 (EC 2.4.1.21) (Starch [bacterial| glycogen] synthase 2) Length = 484 Score = 30.0 bits (66), Expect = 5.2 Identities = 15/39 (38%), Positives = 22/39 (56%) Frame = -1 Query: 324 LRRRPRQFGGNIHTLNSEEQDPSDNRNVFWNGNSTEFGG 208 L RR G ++ L+SEE +PS +R +F N +S G Sbjct: 239 LERRQADLAGILNGLDSEEWNPSLDRRIFRNYSSKSLAG 277
>MURC_ENTFA (Q833N6) UDP-N-acetylmuramate--L-alanine ligase (EC 6.3.2.8)| (UDP-N-acetylmuramoyl-L-alanine synthetase) Length = 445 Score = 29.6 bits (65), Expect = 6.8 Identities = 15/38 (39%), Positives = 21/38 (55%) Frame = -1 Query: 558 PSSDLDRTGNSDKSGGWGFLGAALSYVNPLSYLRGNPT 445 P + + TG+ K+ G L LS +NP SYL G+ T Sbjct: 105 PYTSIAVTGSHGKTSTTGLLAHVLSGINPTSYLIGDGT 142
>FUS_MOUSE (P56959) RNA-binding protein FUS (Pigpen protein)| Length = 518 Score = 29.6 bits (65), Expect = 6.8 Identities = 30/104 (28%), Positives = 39/104 (37%), Gaps = 2/104 (1%) Frame = -1 Query: 534 GNSDKSGGWGFLGAALSYVNPLSYLRGNPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQ 355 GN D+SGG G Y G + G G Y SS RG G Sbjct: 195 GNQDQSGGGGG-----------GYGGGQQDRGGRGRGGGGG---YNRSSGGYEPRGRGGG 240 Query: 354 QPATHSSGNTLRRRPRQFGG--NIHTLNSEEQDPSDNRNVFWNG 229 + G + R +FGG + + + EQD SDN +F G Sbjct: 241 RGGRGGMGGSDRGGFNKFGGPRDQGSRHDSEQDNSDNNTIFVQG 284
>VL1_HPV35 (P27232) Major capsid protein L1| Length = 502 Score = 29.6 bits (65), Expect = 6.8 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Frame = -1 Query: 264 DPSDNRNVFWNGNSTEFG-GDEKK*GVTGLLELNML-----GNKYVGNN*GVEQQCLYIC 103 DP+ R V W E G G G++G LN L NKYVGN+ ++C+ + Sbjct: 92 DPASQRLV-WACTGVEVGRGQPLGVGISGHPLLNKLDDTENSNKYVGNSGTDNRECISMD 150 Query: 102 WEQTEV 85 ++QT++ Sbjct: 151 YKQTQL 156
>Y4IR_RHISN (P55485) Hypothetical 17.6 kDa protein y4iR| Length = 161 Score = 29.3 bits (64), Expect = 8.9 Identities = 13/45 (28%), Positives = 21/45 (46%) Frame = +3 Query: 57 ILMYKGYNLTPRFVPSICINTVVQHLSCSQHIYFPTYLTPTVPSP 191 I++ +G P F PSI I H C + + P ++T +P Sbjct: 77 IVLIRGDGSEPHFSPSIKIEDAAVHFKCCRPVLDPVFVTADDATP 121
>TAU_PANTR (Q5YCW1) Microtubule-associated protein tau| Length = 775 Score = 29.3 bits (64), Expect = 8.9 Identities = 24/85 (28%), Positives = 35/85 (41%) Frame = -1 Query: 585 KVARHQSSLPSSDLDRTGNSDKSGGWGFLGAALSYVNPLSYLRGNPTPSNLDQLGNEGSQ 406 +V + ++ + S D TG+ DK +A + N +PTP + D L S Sbjct: 369 RVPQLKARMVSKSKDGTGSDDKKAKTSTRSSAKTLKNRPCLSPKHPTPGSSDPLIQPSSP 428 Query: 405 QYKPSSESQPLRGDGSQQPATHSSG 331 P S P + S P T SSG Sbjct: 429 AVCPEPPSSP-KYVSSVTPRTGSSG 452
>TAU_GORGO (Q5YCW0) Microtubule-associated protein tau| Length = 775 Score = 29.3 bits (64), Expect = 8.9 Identities = 24/85 (28%), Positives = 35/85 (41%) Frame = -1 Query: 585 KVARHQSSLPSSDLDRTGNSDKSGGWGFLGAALSYVNPLSYLRGNPTPSNLDQLGNEGSQ 406 +V + ++ + S D TG+ DK +A + N +PTP + D L S Sbjct: 369 RVPQLKARMVSKSKDGTGSDDKKAKTSTRSSAKTLKNRPCLSPKHPTPGSSDPLIQPSSP 428 Query: 405 QYKPSSESQPLRGDGSQQPATHSSG 331 P S P + S P T SSG Sbjct: 429 AVCPEPPSSP-KYVSSVTPRTGSSG 452
>UBAX1_ARATH (Q7Y175) UBA and UBX domain-containing protein At4g15410| Length = 421 Score = 29.3 bits (64), Expect = 8.9 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 4/71 (5%) Frame = -1 Query: 453 NPTPSNLDQLGNEGSQQYKPSSESQPL----RGDGSQQPATHSSGNTLRRRPRQFGGNIH 286 +P+PS S+ PSS + P RG + T + R RQ GNI Sbjct: 85 SPSPSR--------SRSASPSSRAAPYGLRSRGGAGENKETENPSGIRSSRSRQHAGNIR 136 Query: 285 TLNSEEQDPSD 253 T + P+D Sbjct: 137 TFADLNRSPAD 147
>BSCL2_RAT (Q5FVJ6) Seipin (Bernardinelli-Seip congenital lipodystrophy type 2| protein homolog) Length = 377 Score = 29.3 bits (64), Expect = 8.9 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -1 Query: 432 DQLGNEGSQQYKPSSESQPLRGDGSQQP 349 D G EG + E QPL G+G Q+P Sbjct: 312 DPSGTEGQLSEEEKPEKQPLNGEGEQEP 339
>TAU_PONPY (Q5S6V2) Microtubule-associated protein tau| Length = 757 Score = 29.3 bits (64), Expect = 8.9 Identities = 24/85 (28%), Positives = 35/85 (41%) Frame = -1 Query: 585 KVARHQSSLPSSDLDRTGNSDKSGGWGFLGAALSYVNPLSYLRGNPTPSNLDQLGNEGSQ 406 +V + ++ + S D TG+ DK +A + N +PTP + D L S Sbjct: 369 RVPQLKARMVSKSKDGTGSDDKKAKTSTRSSAKTLKNRPCLSPKHPTPGSSDPLIQPSSP 428 Query: 405 QYKPSSESQPLRGDGSQQPATHSSG 331 P S P + S P T SSG Sbjct: 429 AVCPEPPSSP-KYVSSVTPRTGSSG 452
>RPB1_PLAFD (P14248) DNA-directed RNA polymerase II largest subunit (EC| 2.7.7.6) Length = 2452 Score = 29.3 bits (64), Expect = 8.9 Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 3/106 (2%) Frame = -1 Query: 468 SYLRGNPTPSNLDQLGNEGSQQYKPSSESQPLRGDGSQQPATHSSGNTLRRRPRQFGGNI 289 +Y GN T N D +G+ A SGN P G NI Sbjct: 654 NYYYGNSTNDNTDDYLEKGN--------------------AYSRSGNNHPNSPLSIGDNI 693 Query: 288 HTLNSEEQD---PSDNRNVFWNGNSTEFGGDEKK*GVTGLLELNML 160 + N ++ D P++N N N NS + G+ NM+ Sbjct: 694 NVGNVQQNDMSSPNNNNNNNNNNNSNNNNNNNIGGGINSFKRFNMV 739 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,705,427 Number of Sequences: 219361 Number of extensions: 2214763 Number of successful extensions: 6575 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 6183 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6572 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 5158951200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
