ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34j07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1YCZ2_SCHPO (O74556) Putative mannan endo-1,6-alpha-mannosidase C... 30 1.2
2GNA1_CAEEL (Q17427) Glucosamine 6-phosphate N-acetyltransferase ... 29 3.4
3EST2_HUMAN (O00748) Carboxylesterase 2 precursor (EC 3.1.1.1) (C... 29 3.4
4HEXB_RAT (Q6AXR4) Beta-hexosaminidase beta chain precursor (EC 3... 28 4.4
5UHRF2_MOUSE (Q7TMI3) Ubiquitin-like PHD and RING finger domain-c... 27 9.9
6UHRF2_HUMAN (Q96PU4) Ubiquitin-like PHD and RING finger domain-c... 27 9.9
7ASB15_BOVIN (Q8HXA6) Ankyrin repeat and SOCS box protein 15 (ASB... 27 9.9

>YCZ2_SCHPO (O74556) Putative mannan endo-1,6-alpha-mannosidase C970.02|
           precursor (EC 3.2.1.101) (Endo-alpha-1->6-D-mannanase
           C970.02)
          Length = 442

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 18/70 (25%), Positives = 33/70 (47%)
 Frame = +2

Query: 38  GIFIDVIYWWEITNQVGNVLADRYLCRGKDMKIYRLSVWCSPSIVELISSFIKSGT*DDD 217
           G+F+   YWWE      N L +RY+  G            + +  EL+ + +   + +D 
Sbjct: 55  GMFLPPAYWWE-AGAAWNGLLNRYIATG------------NSTYNELVKTSMLYQSGEDS 101

Query: 218 DVLPSNVSST 247
           D +PSN +++
Sbjct: 102 DYMPSNYTTS 111



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>GNA1_CAEEL (Q17427) Glucosamine 6-phosphate N-acetyltransferase (EC 2.3.1.4)|
           (Phosphoglucosamine transacetylase) (Phosphoglucosamine
           acetylase)
          Length = 165

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 50  DVIYWWEITNQ-VGNVLADRYLCRGKDMKIYRLSVWCSPSIVELISSF 190
           DV+   E+  Q +G VL    +  GK + +Y++S+ C P ++   S F
Sbjct: 105 DVVVDTEMRRQKLGAVLLKTLVSLGKSLGVYKISLECVPELLPFYSQF 152



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>EST2_HUMAN (O00748) Carboxylesterase 2 precursor (EC 3.1.1.1) (CE-2) (hCE-2)|
          Length = 559

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 55  YILVGNHQPSWKRTGRSLFMQGERHEDLPFV 147
           Y     HQPSW +  R   M+ +  ++LPFV
Sbjct: 434 YFYEFQHQPSWLKNIRPPHMKADHGDELPFV 464



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>HEXB_RAT (Q6AXR4) Beta-hexosaminidase beta chain precursor (EC 3.2.1.52)|
           (N-acetyl-beta-glucosaminidase)
           (Beta-N-acetylhexosaminidase) (Hexosaminidase B)
          Length = 537

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 141 VCPFGVLPALWSSFPLS*KVEPRMMMMS 224
           V PFG+ PALW   P S +V PR++ +S
Sbjct: 25  VAPFGLQPALW-PMPRSVQVFPRLLYIS 51



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>UHRF2_MOUSE (Q7TMI3) Ubiquitin-like PHD and RING finger domain-containing|
           protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD
           and RING finger domains protein 2) (Np95-like ring
           finger protein) (Nuclear zinc finger protein Np97)
           (NIRF)
          Length = 803

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 14  PVTSTSHDGIFIDVIYWWEITNQVGNVLADRYLCRGKDMK 133
           P     +DGI+  V YW EI++  G  L  RYL R  D++
Sbjct: 579 PEEGNRYDGIYKVVKYWPEISSSHG-FLVWRYLLRRDDVE 617



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>UHRF2_HUMAN (Q96PU4) Ubiquitin-like PHD and RING finger domain-containing|
           protein 2 (EC 6.3.2.-) (Ubiquitin-like-containing PHD
           and RING finger domains protein 2) (Np95/ICBP90-like
           RING finger protein) (Np95-like RING finger protein)
           (Nuclear zinc finger
          Length = 802

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 14  PVTSTSHDGIFIDVIYWWEITNQVGNVLADRYLCRGKDMK 133
           P     +DGI+  V YW EI++  G  L  RYL R  D++
Sbjct: 578 PEEGNRYDGIYKVVKYWPEISSSHG-FLVWRYLLRRDDVE 616



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>ASB15_BOVIN (Q8HXA6) Ankyrin repeat and SOCS box protein 15 (ASB-15)|
          Length = 588

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 62  WWEITNQVGNVLADRYLCRGKDMKIYRLSVWCSPSIVELIS 184
           W EI   + N  + ++LCR K  ++  L   C P+++E +S
Sbjct: 524 WPEIRQILENPCSLKHLCRLKIRRLMGLQRLCQPTLMEKLS 564


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,553,542
Number of Sequences: 219361
Number of extensions: 994470
Number of successful extensions: 2254
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2254
length of database: 80,573,946
effective HSP length: 81
effective length of database: 62,805,705
effective search space used: 1507336920
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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