ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34j07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111916.1| Zea mays CL4656_1 mRNA sequence 82 1e-12
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
3dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
4dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic D... 70 5e-09
5dbj|AK121892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 5e-09
6dbj|AK106147.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 5e-09
7dbj|AK061722.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 5e-09
8dbj|AB062681.1| Oryza sativa (japonica cultivar-group) mRNA for ... 70 5e-09
9gb|AC164094.5| Mus musculus BAC clone RP23-133F10 from chromosom... 46 0.068
10gb|AC137735.5| Homo sapiens chromosome 17, clone CTD-2582D11, co... 46 0.068
11dbj|AP004503.1| Lotus japonicus genomic DNA, chromosome 5, clone... 46 0.068
12gb|AC140334.3| Mus musculus BAC clone RP23-244J7 from chromosome... 44 0.27
13gb|AC163709.3| Gallus gallus BAC clone CH261-60F22 from chromoso... 44 0.27
14gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Can... 42 1.1
15gb|AC117376.3| Homo sapiens 12 BAC RP11-349K16 (Roswell Park Can... 42 1.1
16gb|AC140232.2| Mus musculus BAC clone RP24-498F17 from chromosom... 40 4.2
17emb|CR450706.7| Zebrafish DNA sequence from clone CH211-14K11 in... 40 4.2
18ref|XM_741110.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 4.2
19emb|AL136100.12| Human DNA sequence from clone RP11-534P19 on ch... 40 4.2
20gb|AC092695.8| Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cance... 40 4.2
21gb|AC005323.1|AC005323 Homo sapiens chromosome 17, clone hRPK.79... 40 4.2
22gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complet... 40 4.2
23emb|AL837522.8| Mouse DNA sequence from clone RP23-264L10 on chr... 40 4.2
24emb|AL645468.11| Mouse DNA sequence from clone RP23-246F18 on ch... 40 4.2
25emb|AL662835.11| Mouse DNA sequence from clone RP23-458A23 on ch... 40 4.2 
>gb|AY111916.1| Zea mays CL4656_1 mRNA sequence
          Length = 621

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 53/57 (92%)
 Strand = Plus / Plus

                                                                    
Query: 226 gccatccaacgtcagcagtactttgtatagatcagggcgcctgtccctgaatatccc 282
           ||||||||||||||| || ||||||||||| |||||||||| |||||||||||||||
Sbjct: 193 gccatccaacgtcagtagcactttgtatagttcagggcgccggtccctgaatatccc 249
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                            
Query: 216      atgatgtcttgccatccaacgtcagcagtactttgtatagatcagggcgcctgtccctga 275
                ||||| ||| ||||||||| || || || ||||| ||||||||||| |||| |||||| |
Sbjct: 19672406 atgatttctcgccatccaatgttagaagcactttatatagatcaggacgccggtccctaa 19672347

                                                          
Query: 276      atatcccccagccgtgtctcgnggatttgatctcgtccaagt 317
                |||||||||| || || || |  || ||||||||||||||||
Sbjct: 19672346 atatcccccaaccatgcctggtagacttgatctcgtccaagt 19672305
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>dbj|AP005798.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:B1136H02
          Length = 145086

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                         
Query: 216   atgatgtcttgccatccaacgtcagcagtactttgtatagatcagggcgcctgtccctga 275
             ||||| ||| ||||||||| || || || ||||| ||||||||||| |||| |||||| |
Sbjct: 29164 atgatttctcgccatccaatgttagaagcactttatatagatcaggacgccggtccctaa 29105

                                                       
Query: 276   atatcccccagccgtgtctcgnggatttgatctcgtccaagt 317
             |||||||||| || || || |  || ||||||||||||||||
Sbjct: 29104 atatcccccaaccatgcctggtagacttgatctcgtccaagt 29063
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>dbj|AP005110.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0605D08
          Length = 144340

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                          
Query: 216    atgatgtcttgccatccaacgtcagcagtactttgtatagatcagggcgcctgtccctga 275
              ||||| ||| ||||||||| || || || ||||| ||||||||||| |||| |||||| |
Sbjct: 138692 atgatttctcgccatccaatgttagaagcactttatatagatcaggacgccggtccctaa 138633

                                                        
Query: 276    atatcccccagccgtgtctcgnggatttgatctcgtccaagt 317
              |||||||||| || || || |  || ||||||||||||||||
Sbjct: 138632 atatcccccaaccatgcctggtagacttgatctcgtccaagt 138591
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>dbj|AK121892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033105C15, full
            insert sequence
          Length = 1392

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                        
Query: 216  atgatgtcttgccatccaacgtcagcagtactttgtatagatcagggcgcctgtccctga 275
            ||||| ||| ||||||||| || || || ||||| ||||||||||| |||| |||||| |
Sbjct: 1026 atgatttctcgccatccaatgttagaagcactttatatagatcaggacgccggtccctaa 967

                                                      
Query: 276  atatcccccagccgtgtctcgnggatttgatctcgtccaagt 317
            |||||||||| || || || |  || ||||||||||||||||
Sbjct: 966  atatcccccaaccatgcctggtagacttgatctcgtccaagt 925
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>dbj|AK106147.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-207-H04, full
           insert sequence
          Length = 1249

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                       
Query: 216 atgatgtcttgccatccaacgtcagcagtactttgtatagatcagggcgcctgtccctga 275
           ||||| ||| ||||||||| || || || ||||| ||||||||||| |||| |||||| |
Sbjct: 977 atgatttctcgccatccaatgttagaagcactttatatagatcaggacgccggtccctaa 918

                                                     
Query: 276 atatcccccagccgtgtctcgnggatttgatctcgtccaagt 317
           |||||||||| || || || |  || ||||||||||||||||
Sbjct: 917 atatcccccaaccatgcctggtagacttgatctcgtccaagt 876
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>dbj|AK061722.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-A03, full
           insert sequence
          Length = 1249

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                       
Query: 216 atgatgtcttgccatccaacgtcagcagtactttgtatagatcagggcgcctgtccctga 275
           ||||| ||| ||||||||| || || || ||||| ||||||||||| |||| |||||| |
Sbjct: 977 atgatttctcgccatccaatgttagaagcactttatatagatcaggacgccggtccctaa 918

                                                     
Query: 276 atatcccccagccgtgtctcgnggatttgatctcgtccaagt 317
           |||||||||| || || || |  || ||||||||||||||||
Sbjct: 917 atatcccccaaccatgcctggtagacttgatctcgtccaagt 876
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>dbj|AB062681.1| Oryza sativa (japonica cultivar-group) mRNA for putative hydrolase,
           complete cds
          Length = 1219

 Score = 69.9 bits (35), Expect = 5e-09
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                       
Query: 216 atgatgtcttgccatccaacgtcagcagtactttgtatagatcagggcgcctgtccctga 275
           ||||| ||| ||||||||| || || || ||||| ||||||||||| |||| |||||| |
Sbjct: 957 atgatttctcgccatccaatgttagaagcactttatatagatcaggacgccggtccctaa 898

                                                     
Query: 276 atatcccccagccgtgtctcgnggatttgatctcgtccaagt 317
           |||||||||| || || || |  || ||||||||||||||||
Sbjct: 897 atatcccccaaccatgcctggtagacttgatctcgtccaagt 856
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>gb|AC164094.5| Mus musculus BAC clone RP23-133F10 from chromosome 6, complete sequence
          Length = 216271

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 40     tatttttattgatgttatatatt 62
              |||||||||||||||||||||||
Sbjct: 118070 tatttttattgatgttatatatt 118048



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 40   tatttttattgatgttatatat 61
            ||||||||||||||||||||||
Sbjct: 2703 tatttttattgatgttatatat 2682
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>gb|AC137735.5| Homo sapiens chromosome 17, clone CTD-2582D11, complete sequence
          Length = 169483

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 168    ttgtggagctcatttcctctttc 190
              |||||||||||||||||||||||
Sbjct: 130791 ttgtggagctcatttcctctttc 130769
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>dbj|AP004503.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT02M03, TM0034a,
             complete sequence
          Length = 83232

 Score = 46.1 bits (23), Expect = 0.068
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 208   ggatgatgatgatgtcttgccat 230
             |||||||||||||||||||||||
Sbjct: 51779 ggatgatgatgatgtcttgccat 51757
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>gb|AC140334.3| Mus musculus BAC clone RP23-244J7 from chromosome 6, complete sequence
          Length = 192598

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 40     tatttttattgatgttatatat 61
              ||||||||||||||||||||||
Sbjct: 157196 tatttttattgatgttatatat 157217



 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 40    tatttttattgatgttatatat 61
             ||||||||||||||||||||||
Sbjct: 39974 tatttttattgatgttatatat 39995
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>gb|AC163709.3| Gallus gallus BAC clone CH261-60F22 from chromosome ul, complete sequence
          Length = 210984

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 168    ttgtggagctcatttcctctttcata 193
              ||||||||||||||||| ||||||||
Sbjct: 147760 ttgtggagctcatttcccctttcata 147785
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>gb|AC055710.10| Homo sapiens 3 BAC RP11-307E22 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 169964

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 179    atttcctctttcataaaaagtggaa 203
              |||||||| ||||||||||||||||
Sbjct: 103666 atttcctcattcataaaaagtggaa 103642
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>gb|AC117376.3| Homo sapiens 12 BAC RP11-349K16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177041

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 178   catttcctctttcataaaaag 198
             |||||||||||||||||||||
Sbjct: 13180 catttcctctttcataaaaag 13200
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>gb|AC140232.2| Mus musculus BAC clone RP24-498F17 from chromosome 5, complete sequence
          Length = 183612

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    cctctttcataaaaagtgga 202
              ||||||||||||||||||||
Sbjct: 153310 cctctttcataaaaagtgga 153291
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>emb|CR450706.7| Zebrafish DNA sequence from clone CH211-14K11 in linkage group 25,
             complete sequence
          Length = 192643

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 39    gtatttttattgatgttatatatt 62
             ||||||||||| ||||||||||||
Sbjct: 27811 gtatttttattaatgttatatatt 27788
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>ref|XM_741110.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000863.01.0)
            partial mRNA
          Length = 1416

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 39   gtatttttattgatgttatatatt 62
            ||||||||||||||||| ||||||
Sbjct: 1114 gtatttttattgatgttttatatt 1091
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>emb|AL136100.12| Human DNA sequence from clone RP11-534P19 on chromosome 6 Contains a
             pseudogene similar to zinc finger proteins, complete
             sequence
          Length = 172212

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 43    ttttattgatgttatatatt 62
             ||||||||||||||||||||
Sbjct: 64231 ttttattgatgttatatatt 64212
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>gb|AC092695.8| Homo sapiens 3 BAC RP11-81E19 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166471

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 38    ggtatttttattgatgttatatat 61
             ||||| ||||||||||||||||||
Sbjct: 40135 ggtatatttattgatgttatatat 40158
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>gb|AC005323.1|AC005323 Homo sapiens chromosome 17, clone hRPK.799_N_11, complete sequence
          Length = 204082

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 243   gtactttgtatagatcaggg 262
             ||||||||||||||||||||
Sbjct: 96369 gtactttgtatagatcaggg 96350
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>gb|AC147987.5| Mus musculus BAC clone RP24-456B4 from 5, complete sequence
          Length = 195371

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   cctctttcataaaaagtgga 202
             ||||||||||||||||||||
Sbjct: 38316 cctctttcataaaaagtgga 38297
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>emb|AL837522.8| Mouse DNA sequence from clone RP23-264L10 on chromosome 4, complete
              sequence
          Length = 128976

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 236    gtcagcagtactttgtatag 255
              ||||||||||||||||||||
Sbjct: 123407 gtcagcagtactttgtatag 123388
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>emb|AL645468.11| Mouse DNA sequence from clone RP23-246F18 on chromosome 4, complete
             sequence
          Length = 209764

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 169   tgtggagctcatttcctctt 188
             ||||||||||||||||||||
Sbjct: 47122 tgtggagctcatttcctctt 47141
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>emb|AL662835.11| Mouse DNA sequence from clone RP23-458A23 on chromosome 11, complete
            sequence
          Length = 162024

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 139  ccgtttgtccgtttggtgttctcc 162
            ||||||||||||||||| ||||||
Sbjct: 8412 ccgtttgtccgtttggttttctcc 8389


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,106,697
Number of Sequences: 3902068
Number of extensions: 3106697
Number of successful extensions: 76473
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76414
Number of HSP's gapped (non-prelim): 59
length of query: 317
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 295
effective length of database: 17,147,199,772
effective search space: 5058423932740
effective search space used: 5058423932740
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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