ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34h16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 1.7
2gb|AC142230.3| Homo sapiens fosmid clone XXFOS-87252A6 from 7, c... 40 1.7
3gb|AC182113.1| Pan troglodytes BAC clone CH251-533C21 from chrom... 40 1.7
4gb|AC020743.7| Homo sapiens BAC clone RP11-813K3 from 7, complet... 38 6.7
5gb|AC090403.8| Homo sapiens chromosome 18, clone RP11-739N10, co... 38 6.7
6emb|BX640578.3| Mouse DNA sequence from clone RP23-261L3 on chro... 38 6.7

>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                      
Query: 92      tgattaataatctanaaatttac 114
               |||||||||||||| ||||||||
Sbjct: 3660037 tgattaataatctataaatttac 3660015



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>gb|AC142230.3| Homo sapiens fosmid clone XXFOS-87252A6 from 7, complete sequence
          Length = 26013

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 81    gcacttttgggtgattaata 100
             ||||||||||||||||||||
Sbjct: 21562 gcacttttgggtgattaata 21581



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>gb|AC182113.1| Pan troglodytes BAC clone CH251-533C21 from chromosome unknown, complete
              sequence
          Length = 221601

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 83     acttttgggtgattaataat 102
              ||||||||||||||||||||
Sbjct: 202529 acttttgggtgattaataat 202548



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>gb|AC020743.7| Homo sapiens BAC clone RP11-813K3 from 7, complete sequence
          Length = 182528

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 58     tgtctccgtaattttgcct 76
              |||||||||||||||||||
Sbjct: 169132 tgtctccgtaattttgcct 169150



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>gb|AC090403.8| Homo sapiens chromosome 18, clone RP11-739N10, complete sequence
          Length = 181250

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                    
Query: 92     tgattaataatctanaaattta 113
              |||||||||||||| |||||||
Sbjct: 101516 tgattaataatctacaaattta 101537



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>emb|BX640578.3| Mouse DNA sequence from clone RP23-261L3 on chromosome 2, complete
             sequence
          Length = 152285

 Score = 38.2 bits (19), Expect = 6.7
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 86    tttgggtgattaataatct 104
             |||||||||||||||||||
Sbjct: 57306 tttgggtgattaataatct 57324


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 641,737
Number of Sequences: 3902068
Number of extensions: 641737
Number of successful extensions: 34478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34459
Number of HSP's gapped (non-prelim): 19
length of query: 141
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 120
effective length of database: 17,151,101,840
effective search space: 2058132220800
effective search space used: 2058132220800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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