ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY111642.1| Zea mays CL34420_2 mRNA sequence 139 7e-30
2gb|AY105494.1| Zea mays PCO138455 mRNA sequence 135 1e-28
3ref|XM_481260.1| Oryza sativa (japonica cultivar-group), mRNA 131 2e-27
4dbj|AK101411.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
5dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
6dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
7dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic D... 82 1e-12
8ref|XM_480197.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.001
9ref|XM_507139.1| PREDICTED Oryza sativa (japonica cultivar-group... 52 0.001
10dbj|AK070913.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
11dbj|AK069857.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
12dbj|AP004489.1| Lotus japonicus genomic DNA, chromosome 2, clone... 42 1.1
13gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 4.5
14gb|AC087606.2| Trypanosoma brucei chromosome 4 clone RPCI93-4J6,... 40 4.5
15gb|AC079933.3| Trypanosoma brucei chromosome 4 clone RPCI93-1H19... 40 4.5
16gb|AC146791.12| Medicago truncatula clone mth2-123m17, complete ... 40 4.5
17gb|AC161117.4| Mus musculus BAC clone RP24-146I24 from chromosom... 40 4.5
18gb|AC161461.5| Mus musculus BAC clone RP23-104L7 from chromosome... 40 4.5
19emb|AL732456.6| Mouse DNA sequence from clone RP23-405D18 on chr... 40 4.5 
>gb|AY111642.1| Zea mays CL34420_2 mRNA sequence
          Length = 601

 Score =  139 bits (70), Expect = 7e-30
 Identities = 156/185 (84%)
 Strand = Plus / Minus

                                                                       
Query: 154 tcttcacattacggtgcagcggctcctttcttcagctggaggtgccccattttgctgata 213
           |||||||||||  ||||| || ||||||||||||||  | || |  ||||||||||| ||
Sbjct: 399 tcttcacattatagtgcatcgactcctttcttcagcccgtggcgtgccattttgctggta 340

                                                                       
Query: 214 tcgggttgcatctgatgggttgtaagtaaattggctggtgtccagaccatacttctctcg 273
            | | |||  ||||| |||||||| || || ||||| |||||||  | ||||||||||||
Sbjct: 339 cctgcttgggtctgaagggttgtatgtgaactggctcgtgtccactcgatacttctctcg 280

                                                                       
Query: 274 catcctttggctccacgcatcatttctgctcncacgttgatcaagtgttgggacgggaac 333
           ||||||||||||||| ||||||||||| ||  |||||||||||||||||||||| |||||
Sbjct: 279 catcctttggctccaggcatcatttctacttgcacgttgatcaagtgttgggacaggaac 220

                
Query: 334 accag 338
           |||||
Sbjct: 219 accag 215
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>gb|AY105494.1| Zea mays PCO138455 mRNA sequence
          Length = 1377

 Score =  135 bits (68), Expect = 1e-28
 Identities = 154/183 (84%)
 Strand = Plus / Minus

                                                                        
Query: 154  tcttcacattacggtgcagcggctcctttcttcagctggaggtgccccattttgctgata 213
            |||||||||||  ||||| || ||||||||||||||  | || || ||||| ||||| ||
Sbjct: 1020 tcttcacattatagtgcatcgactcctttcttcagcctgtggagcgccattctgctggta 961

                                                                        
Query: 214  tcgggttgcatctgatgggttgtaagtaaattggctggtgtccagaccatacttctctcg 273
             | | |||  ||||| |||||||| || || ||||| |||||||||||||||||||||||
Sbjct: 960  cctgcttgggtctgaggggttgtacgtgaactggctcgtgtccagaccatacttctctcg 901

                                                                        
Query: 274  catcctttggctccacgcatcatttctgctcncacgttgatcaagtgttgggacgggaac 333
            ||||||||||||||| ||||||||||| ||   ||| ||||| ||||||||||| |||||
Sbjct: 900  catcctttggctccaggcatcatttctacttgaacgctgatcgagtgttgggacaggaac 841

               
Query: 334  acc 336
            |||
Sbjct: 840  acc 838
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>ref|XM_481260.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1385

 Score =  131 bits (66), Expect = 2e-27
 Identities = 143/169 (84%)
 Strand = Plus / Minus

                                                                        
Query: 170  cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 229
            |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 1034 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 975

                                                                        
Query: 230  gggttgtaagtaaattggctggtgtccagaccatacttctctcgcatcctttggctccac 289
            || || || || || ||||| |||||||||||||||||||| |||||||| |||||||| 
Sbjct: 974  ggattataggtgaactggcttgtgtccagaccatacttctcacgcatcctctggctccat 915

                                                             
Query: 290  gcatcatttctgctcncacgttgatcaagtgttgggacgggaacaccag 338
            ||||| ||||||||  | ||||| ||||| ||||  || ||||||||||
Sbjct: 914  gcatcgtttctgctagcgcgttgctcaagggttgcaacaggaacaccag 866
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>dbj|AK101411.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037J09, full
            insert sequence
          Length = 1385

 Score =  131 bits (66), Expect = 2e-27
 Identities = 143/169 (84%)
 Strand = Plus / Minus

                                                                        
Query: 170  cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 229
            |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 1034 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 975

                                                                        
Query: 230  gggttgtaagtaaattggctggtgtccagaccatacttctctcgcatcctttggctccac 289
            || || || || || ||||| |||||||||||||||||||| |||||||| |||||||| 
Sbjct: 974  ggattataggtgaactggcttgtgtccagaccatacttctcacgcatcctctggctccat 915

                                                             
Query: 290  gcatcatttctgctcncacgttgatcaagtgttgggacgggaacaccag 338
            ||||| ||||||||  | ||||| ||||| ||||  || ||||||||||
Sbjct: 914  gcatcgtttctgctagcgcgttgctcaagggttgcaacaggaacaccag 866
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                            
Query: 170      cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 229
                |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 11049456 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 11049515

                                                     
Query: 230      gggttgtaagtaaattggctggtgtccagaccatact 266
                || || || || || ||||| ||||||||||||||||
Sbjct: 11049516 ggattataggtgaactggcttgtgtccagaccatact 11049552
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>dbj|AP006532.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:B1446H11
          Length = 135488

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                         
Query: 170   cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 229
             |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 20062 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 20121

                                                  
Query: 230   gggttgtaagtaaattggctggtgtccagaccatact 266
             || || || || || ||||| ||||||||||||||||
Sbjct: 20122 ggattataggtgaactggcttgtgtccagaccatact 20158
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>dbj|AP005503.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
            clone:P0560B10, complete sequence
          Length = 108295

 Score = 81.8 bits (41), Expect = 1e-12
 Identities = 83/97 (85%)
 Strand = Plus / Plus

                                                                        
Query: 170  cagcggctcctttcttcagctggaggtgccccattttgctgatatcgggttgcatctgat 229
            |||||| ||||||||||||||||||| || |||||||||||||||| | |||  ||||| 
Sbjct: 7972 cagcggttcctttcttcagctggaggggcaccattttgctgatatctgcttgggtctgac 8031

                                                 
Query: 230  gggttgtaagtaaattggctggtgtccagaccatact 266
            || || || || || ||||| ||||||||||||||||
Sbjct: 8032 ggattataggtgaactggcttgtgtccagaccatact 8068
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>ref|XM_480197.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1241

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 250  ggtgtccagaccatacttctctcgcatcctttggctccacgcatcatttc 299
            ||||||||  |||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 1028 ggtgtccaccccatacttttctctcattctttggctccacgcatcgtttc 979
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>ref|XM_507139.1| PREDICTED Oryza sativa (japonica cultivar-group), P0498E12.115 mRNA
          Length = 1341

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 250  ggtgtccagaccatacttctctcgcatcctttggctccacgcatcatttc 299
            ||||||||  |||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 1031 ggtgtccaccccatacttttctctcattctttggctccacgcatcgtttc 982
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>dbj|AK070913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023064O03, full
            insert sequence
          Length = 1340

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 250  ggtgtccagaccatacttctctcgcatcctttggctccacgcatcatttc 299
            ||||||||  |||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 1030 ggtgtccaccccatacttttctctcattctttggctccacgcatcgtttc 981
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>dbj|AK069857.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023035K06, full
            insert sequence
          Length = 1242

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 250  ggtgtccagaccatacttctctcgcatcctttggctccacgcatcatttc 299
            ||||||||  |||||||| |||| ||| ||||||||||||||||| ||||
Sbjct: 1029 ggtgtccaccccatacttttctctcattctttggctccacgcatcgtttc 980
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>dbj|AP004489.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04I02, TM0021,
             complete sequence
          Length = 83700

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 170   cagcggctcctttcttcagctggaggtgc 198
             ||||| ||||||||||||| |||||||||
Sbjct: 39414 cagcgactcctttcttcagttggaggtgc 39386
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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     aacaacacggtatatccaaa 95
              ||||||||||||||||||||
Sbjct: 715907 aacaacacggtatatccaaa 715888
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>gb|AC087606.2| Trypanosoma brucei chromosome 4 clone RPCI93-4J6, complete sequence
          Length = 37931

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    aacaacacggtatatccaaa 95
             ||||||||||||||||||||
Sbjct: 14628 aacaacacggtatatccaaa 14609
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>gb|AC079933.3| Trypanosoma brucei chromosome 4 clone RPCI93-1H19, complete sequence
          Length = 171392

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 76     aacaacacggtatatccaaa 95
              ||||||||||||||||||||
Sbjct: 168404 aacaacacggtatatccaaa 168385
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>gb|AC146791.12| Medicago truncatula clone mth2-123m17, complete sequence
          Length = 130971

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 157 tcacattacggtgcagcggctcctttcttcagctgg 192
           |||||||| ||| || |||||||| |||||||||||
Sbjct: 439 tcacattatggtacaacggctcctctcttcagctgg 404
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>gb|AC161117.4| Mus musculus BAC clone RP24-146I24 from chromosome 13, complete sequence
          Length = 195710

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 177    tcctttcttcagctggaggtgccc 200
              ||||||||||||||| ||||||||
Sbjct: 193918 tcctttcttcagctgaaggtgccc 193895
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>gb|AC161461.5| Mus musculus BAC clone RP23-104L7 from chromosome 13, complete sequence
          Length = 234110

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 177   tcctttcttcagctggaggtgccc 200
             ||||||||||||||| ||||||||
Sbjct: 43900 tcctttcttcagctgaaggtgccc 43877
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>emb|AL732456.6| Mouse DNA sequence from clone RP23-405D18 on chromosome X, complete
             sequence
          Length = 136482

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 92    caaactgtgcaagctgagat 111
             ||||||||||||||||||||
Sbjct: 93800 caaactgtgcaagctgagat 93819


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,575,999
Number of Sequences: 3902068
Number of extensions: 2575999
Number of successful extensions: 40981
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40945
Number of HSP's gapped (non-prelim): 34
length of query: 340
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 318
effective length of database: 17,147,199,772
effective search space: 5452809527496
effective search space used: 5452809527496
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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