>PALF_YEAST (P53179) pH-response regulator protein palF/RIM8 (Regulator of IME2|
           protein 8)
          Length = 542

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = +1

Query: 7   LP*PSHKSKVFRSNNSTTPQKGKIGQRQSTTQN*PQLTASNRTASQQMTRVSSIFLPFPT 186
           LP P  K+ V +S +    +K K  + +S++    QLT  + T++   + V+S   P P 
Sbjct: 203 LPKPKTKTVVLQSASMVQNKKNKSTEDESSSYT--QLTQKSTTSNSSSSSVNSKTSPLPN 260

Query: 187 RTYVVA 204
           +T  ++
Sbjct: 261 KTVTIS 266

>BRC2_HALRO (O01409) T-box-containing protein 2 (AS-T2)|
          Length = 681

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +1

Query: 157 VSSIFLPFPTRTYVVAAHPVLHHRRHVQRTTP 252
           V  + LPFP  TYV  A P+   RRH   +TP
Sbjct: 36  VGGLQLPFPGYTYV-GASPLTQPRRHFPNSTP 66

>BUR1_ASHGO (Q75D46) Serine/threonine-protein kinase BUR1 (EC 2.7.11.22) (EC|
           2.7.11.23)
          Length = 753

 Score = 29.3 bits (64), Expect = 2.5
 Identities = 24/77 (31%), Positives = 33/77 (42%), Gaps = 2/77 (2%)
 Frame = +1

Query: 49  NSTTPQKGKIGQRQSTTQN*PQLTASNRTASQQMTRVSSIFLPFPTRTYVVAAHPVLHHR 228
           + T  Q  +  Q Q      PQ   S++   QQ+   + +  P        +AH   +  
Sbjct: 421 SQTQQQSSRHHQSQPYQSLPPQ--KSSQPHPQQIPEAAPVQQPSQQPPQEPSAHQQQYSS 478

Query: 229 RHVQ--RTTPAPTSFPP 273
           R  Q  RTTPAPTS PP
Sbjct: 479 RGPQQHRTTPAPTSLPP 495

>SYT15_MOUSE (Q8C6N3) Synaptotagmin-15 (Synaptotagmin XV) (SytXV)|
          Length = 418

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 275 VGGKLVGAGVVRCTWRRWCXT 213
           +GG L+  GV  C WRR+C T
Sbjct: 13  IGGLLLLIGVSCCLWRRFCAT 33

>CADH1_CHICK (P08641) Epithelial-cadherin precursor (E-cadherin) (Cadherin-1)|
           (Liver cell adhesion molecule) (L-CAM)
          Length = 887

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 220 HHRRHVQRTTPAPTSFP 270
           HH  H+Q TTPA  +FP
Sbjct: 132 HHNHHLQDTTPAVLTFP 148

>MED12_HUMAN (Q93074) Mediator of RNA polymerase II transcription subunit 12|
            (Thyroid hormone receptor-associated protein complex 230
            kDa component) (Trap230) (Activator-recruited cofactor
            240 kDa component) (ARC240) (CAG repeat protein 45)
            (OPA-containin
          Length = 2212

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 24/86 (27%), Positives = 38/86 (44%)
 Frame = +1

Query: 19   SHKSKVFRSNNSTTPQKGKIGQRQSTTQN*PQLTASNRTASQQMTRVSSIFLPFPTRTYV 198
            S+K+ V+R      PQ  ++ Q+   +Q         +++  QMT  SS  L   ++ Y 
Sbjct: 1927 SYKTSVYRQQQPAVPQGQRLRQQLQQSQG-----MLGQSSVHQMTPSSSYGLQ-TSQGYT 1980

Query: 199  VAAHPVLHHRRHVQRTTPAPTSFPPT 276
                P + H    Q T PA T  PP+
Sbjct: 1981 ----PYVSHVGLQQHTGPAGTMVPPS 2002

>FOXN4_MOUSE (Q8K3Q3) Forkhead box protein N4|
          Length = 521

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 4/96 (4%)
 Frame = +1

Query: 16  PSHKSKVFRSNNSTTPQKGKIGQRQSTTQN*PQLTASNRTASQQMTRVSSIFLPFPTRTY 195
           P    K+      +  + GK G+ ++     P LT +   A        S   P P  T 
Sbjct: 304 PEELDKLISDRPESCRRPGKRGEPKA-----PMLTHATTVAMAHSCLAISQLPPKPLMTL 358

Query: 196 VVAAHPVLHHR----RHVQRTTPAPTSFPPTCRLXS 291
            + + P LHH+     H+   +PAP   PP   L S
Sbjct: 359 SLQSVP-LHHQLQPQAHLAPDSPAPAQTPPLHALPS 393

>POLG_HCVBK (P26663) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3009

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +2

Query: 8    CPNRPIKVRCFDPTIPPPRKKEKLV 82
            CP  PIK     P IPPPR+K  +V
Sbjct: 2313 CPLPPIKA----PPIPPPRRKRTVV 2333

>CD20_MOUSE (P19437) B-cell surface protein CD20 homolog (B-cell|
           differentiation antigen Ly-44)
          Length = 291

 Score = 27.3 bits (59), Expect = 9.5
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 266 KLVGAGVVRCTWRRWCXTGWAATTYVRVGKGRKIELTLVICCEAVLLLAVN 114
           KLV AG+V   W+R C    + +  V +  G K E T+ +  E + L  V+
Sbjct: 199 KLVTAGIVENEWKRMCTR--SKSNVVLLSAGEKNEQTIKMKEEIIELSGVS 247


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,133,987
Number of Sequences: 219361
Number of extensions: 805264
Number of successful extensions: 2295
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2293
length of database: 80,573,946
effective HSP length: 93
effective length of database: 60,173,373
effective search space used: 1444160952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)