ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34g15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ACSL4_MOUSE (Q9QUJ7) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2... 32 0.63
2L2GL2_PONPY (Q5RCX2) Lethal(2) giant larvae protein homolog 2 30 2.4
3L2GL2_HUMAN (Q6P1M3) Lethal(2) giant larvae protein homolog 2 (HGL) 30 2.4
4ACSL4_HUMAN (O60488) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2... 29 3.1
5Y045_RICCN (Q92JM2) Hypothetical protein RC0045 28 6.9

>ACSL4_MOUSE (Q9QUJ7) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 4) (LACS 4) (mACS4)
          Length = 711

 Score = 31.6 bits (70), Expect = 0.63
 Identities = 15/36 (41%), Positives = 23/36 (63%)
 Frame = -3

Query: 124 VNISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLT 17
           +N+ LN+L+I +   P+HLLI  +S   F+ W  LT
Sbjct: 1   MNLKLNVLTIILL--PVHLLITIYSALIFIPWYFLT 34



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>L2GL2_PONPY (Q5RCX2) Lethal(2) giant larvae protein homolog 2|
          Length = 1019

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 88  WQRPIHLLIICHSQYSFLQW 29
           WQR   LL+ CHS  S+ QW
Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257



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>L2GL2_HUMAN (Q6P1M3) Lethal(2) giant larvae protein homolog 2 (HGL)|
          Length = 1020

 Score = 29.6 bits (65), Expect = 2.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 88  WQRPIHLLIICHSQYSFLQW 29
           WQR   LL+ CHS  S+ QW
Sbjct: 238 WQRDGRLLVSCHSDGSYCQW 257



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>ACSL4_HUMAN (O60488) Long-chain-fatty-acid--CoA ligase 4 (EC 6.2.1.3)|
           (Long-chain acyl-CoA synthetase 4) (LACS 4)
          Length = 711

 Score = 29.3 bits (64), Expect = 3.1
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = -3

Query: 124 VNISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLT 17
           + + LN+L+I +   P+HLLI  +S   F+ W  LT
Sbjct: 1   MKLKLNVLTIILL--PVHLLITIYSALIFIPWYFLT 34



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>Y045_RICCN (Q92JM2) Hypothetical protein RC0045|
          Length = 108

 Score = 28.1 bits (61), Expect = 6.9
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
 Frame = -3

Query: 136 WACFVN-------ISLNILSIPIWQRPIHLLIICHSQYSFLQWRLLTALLQT 2
           W  F N       I +NI++I I  +  H++I C +    + W+++  ++ +
Sbjct: 23  WIAFNNSKYPIKTIKINIININILGKINHMVIFCDNNIVIILWKIMVVIISS 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,543,604
Number of Sequences: 219361
Number of extensions: 290043
Number of successful extensions: 850
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 850
length of database: 80,573,946
effective HSP length: 26
effective length of database: 74,870,560
effective search space used: 1796893440
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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