No.
Definition
Score (bits)
E Value
1 dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...
139
1e-29
2 gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...
139
1e-29
3 emb|AL831808.4|CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa...
139
1e-29
4 emb|BX255875.3|CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa...
139
1e-29
5 dbj|AP006090.1| Lotus japonicus genomic DNA, chromosome 1, clone...
58
4e-05
6 ref|XM_369157.1| Magnaporthe grisea 70-15 chromosome VI hypothet...
46
0.15
7 ref|XM_390740.1| Gibberella zeae PH-1 chromosome 1 hypothetical ...
44
0.61
8 gb|AF311901.1|AF311901 Citrobacter rodentium strain DBS100 patho...
44
0.61
9 dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D...
44
0.61
10 dbj|AP003708.2| Oryza sativa (japonica cultivar-group) genomic D...
44
0.61
11 dbj|AK069536.1| Oryza sativa (japonica cultivar-group) cDNA clon...
44
0.61
12 dbj|AK066485.1| Oryza sativa (japonica cultivar-group) cDNA clon...
44
0.61
13 emb|CR974473.23| Mouse DNA sequence from clone RP23-38P5 on chro...
44
0.61
14 gb|AE008692.1| Zymomonas mobilis subsp. mobilis ZM4, complete ge...
44
0.61
15 gb|AC150307.3| Rhinolophus ferrumequinum clone VMRC7-71A7, compl...
42
2.4
16 gb|DP000028.1| Rhinolophus ferrumequinum target 1 genomic scaffold
42
2.4
17 gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ...
42
2.4
18 emb|AL928952.15| Zebrafish DNA sequence from clone CH211-225G23,...
42
2.4
19 gb|AC122766.25| Mus musculus chromosome 3, clone RP24-111F24, co...
40
9.6
20 gb|AC125006.9| Mus musculus chromosome 3, clone RP24-157K20, com...
40
9.6
21 gb|DQ149611.1| Human adenovirus type 31 hexon protein gene, comp...
40
9.6
22 gb|AC120986.2| Oryza sativa (japonica cultivar-group) chromosome...
40
9.6
23 gb|AC120990.3| Oryza sativa (japonica cultivar-group) chromosome...
40
9.6
24 gb|AC137980.4| Mus musculus BAC clone RP24-69K24 from chromosome...
40
9.6
25 ref|XM_538961.2| PREDICTED: Canis familiaris similar to progesti...
40
9.6
26 emb|CR536601.8| Platypus DNA sequence from clone XX-307A9, compl...
40
9.6
27 emb|Y17253.1|HAY17253 Human adenovirus type 31 hexon gene (partial)
40
9.6
28 gb|CP000088.1| Thermobifida fusca YX, complete genome
40
9.6
29 gb|AF161320.1|AF161320 Pseudomonas aeruginosa NRAMP protein MntH...
40
9.6
30 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
40
9.6
31 gb|AE004516.1| Pseudomonas aeruginosa PAO1, section 77 of 529 of...
40
9.6
32 gb|AC131681.4| Mus musculus BAC clone RP23-353O7 from 9, complet...
40
9.6
33 dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, comp...
40
9.6
>dbj|AP008218.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 139 bits (70), Expect = 1e-29
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 176 ccttaggaggatctggtgccaactccatggggtcaacttcaaaaggccaaacatatcgtt 235
|||| |||||||||||||| | ||||||||| || ||||| |||||||| |||||||| |
Sbjct: 18959592 cctttggaggatctggtgctagctccatgggatcgacttcgaaaggccagacatatcgct 18959651
Query: 236 caggctgcccatttctcgccaagctccaatcatataatcttctctcttcctcggttgata 295
|||||| ||| |||| ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 18959652 caggctttccacttcttgccaaactccaatcgtataatcttctctcttcctcggtccata 18959711
Query: 296 atatggtaaaagattcct 313
|||||||||||||||||
Sbjct: 18959712 gtatggtaaaagattcct 18959729
Score = 107 bits (54), Expect = 5e-20
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 466 aggccgcgcatcgccttctgcacgttggcggcggagatgagcgagtagggaggccgcgtg 525
||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct: 18961188 aggccgcgcatcgccttctgcacgttgtcggcggagatgagcgagtacggcggccgcgtc 18961247
Query: 526 gaattggcagcgccgccggcgacgtc 551
|| | || |||||||||||||||||
Sbjct: 18961248 gacgtcgcggcgccgccggcgacgtc 18961273
Score = 56.0 bits (28), Expect = 2e-04
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 319 aggtcatgttccttgctgatttcctcttcttccagtcctt 358
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 18959828 aggtcatgctccttgttgatttcctcttcttccaatcctt 18959867
Score = 54.0 bits (27), Expect = 6e-04
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 400 acctcatcggttgacgctaatctggtaattccaagcctcccatagtgatca 450
||||||||||| || ||| ||||||| || |||||||||||||| ||||||
Sbjct: 18960758 acctcatcggtagaagctgatctggtgatcccaagcctcccataatgatca 18960808
Score = 46.1 bits (23), Expect = 0.15
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 104 aggctacagaaattatgaaccatgtcaacaagaagtagccgacaagctttgtaggaaact 163
|||| ||||| | ||||||||||| || || |||||||| || |||||||| || ||||
Sbjct: 18959324 aggcaacagatagtatgaaccatgccaggaaaaagtagccaaccagctttgttgggaact 18959383
Query: 164 catcttc 170
|||||||
Sbjct: 18959384 catcttc 18959390
>gb|DP000011.1 | Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 139 bits (70), Expect = 1e-29
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 176 ccttaggaggatctggtgccaactccatggggtcaacttcaaaaggccaaacatatcgtt 235
|||| |||||||||||||| | ||||||||| || ||||| |||||||| |||||||| |
Sbjct: 18885819 cctttggaggatctggtgctagctccatgggatcgacttcgaaaggccagacatatcgct 18885878
Query: 236 caggctgcccatttctcgccaagctccaatcatataatcttctctcttcctcggttgata 295
|||||| ||| |||| ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 18885879 caggctttccacttcttgccaaactccaatcgtataatcttctctcttcctcggtccata 18885938
Query: 296 atatggtaaaagattcct 313
|||||||||||||||||
Sbjct: 18885939 gtatggtaaaagattcct 18885956
Score = 107 bits (54), Expect = 5e-20
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 466 aggccgcgcatcgccttctgcacgttggcggcggagatgagcgagtagggaggccgcgtg 525
||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct: 18887415 aggccgcgcatcgccttctgcacgttgtcggcggagatgagcgagtacggcggccgcgtc 18887474
Query: 526 gaattggcagcgccgccggcgacgtc 551
|| | || |||||||||||||||||
Sbjct: 18887475 gacgtcgcggcgccgccggcgacgtc 18887500
Score = 56.0 bits (28), Expect = 2e-04
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 319 aggtcatgttccttgctgatttcctcttcttccagtcctt 358
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 18886055 aggtcatgctccttgttgatttcctcttcttccaatcctt 18886094
Score = 54.0 bits (27), Expect = 6e-04
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 400 acctcatcggttgacgctaatctggtaattccaagcctcccatagtgatca 450
||||||||||| || ||| ||||||| || |||||||||||||| ||||||
Sbjct: 18886985 acctcatcggtagaagctgatctggtgatcccaagcctcccataatgatca 18887035
Score = 46.1 bits (23), Expect = 0.15
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 104 aggctacagaaattatgaaccatgtcaacaagaagtagccgacaagctttgtaggaaact 163
|||| ||||| | ||||||||||| || || |||||||| || |||||||| || ||||
Sbjct: 18885551 aggcaacagatagtatgaaccatgccaggaaaaagtagccaaccagctttgttgggaact 18885610
Query: 164 catcttc 170
|||||||
Sbjct: 18885611 catcttc 18885617
>emb|AL831808.4 |CNS08CAL Oryza sativa chromosome 12, . BAC OSJNBa0028H02 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 153064
Score = 139 bits (70), Expect = 1e-29
Identities = 121/138 (87%)
Strand = Plus / Minus
Query: 176 ccttaggaggatctggtgccaactccatggggtcaacttcaaaaggccaaacatatcgtt 235
|||| |||||||||||||| | ||||||||| || ||||| |||||||| |||||||| |
Sbjct: 10787 cctttggaggatctggtgctagctccatgggatcgacttcgaaaggccagacatatcgct 10728
Query: 236 caggctgcccatttctcgccaagctccaatcatataatcttctctcttcctcggttgata 295
|||||| ||| |||| ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 10727 caggctttccacttcttgccaaactccaatcgtataatcttctctcttcctcggtccata 10668
Query: 296 atatggtaaaagattcct 313
|||||||||||||||||
Sbjct: 10667 gtatggtaaaagattcct 10650
Score = 107 bits (54), Expect = 5e-20
Identities = 78/86 (90%)
Strand = Plus / Minus
Query: 466 aggccgcgcatcgccttctgcacgttggcggcggagatgagcgagtagggaggccgcgtg 525
||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct: 9191 aggccgcgcatcgccttctgcacgttgtcggcggagatgagcgagtacggcggccgcgtc 9132
Query: 526 gaattggcagcgccgccggcgacgtc 551
|| | || |||||||||||||||||
Sbjct: 9131 gacgtcgcggcgccgccggcgacgtc 9106
Score = 56.0 bits (28), Expect = 2e-04
Identities = 37/40 (92%)
Strand = Plus / Minus
Query: 319 aggtcatgttccttgctgatttcctcttcttccagtcctt 358
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 10551 aggtcatgctccttgttgatttcctcttcttccaatcctt 10512
Score = 54.0 bits (27), Expect = 6e-04
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 400 acctcatcggttgacgctaatctggtaattccaagcctcccatagtgatca 450
||||||||||| || ||| ||||||| || |||||||||||||| ||||||
Sbjct: 9621 acctcatcggtagaagctgatctggtgatcccaagcctcccataatgatca 9571
Score = 46.1 bits (23), Expect = 0.15
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 104 aggctacagaaattatgaaccatgtcaacaagaagtagccgacaagctttgtaggaaact 163
|||| ||||| | ||||||||||| || || |||||||| || |||||||| || ||||
Sbjct: 11055 aggcaacagatagtatgaaccatgccaggaaaaagtagccaaccagctttgttgggaact 10996
Query: 164 catcttc 170
|||||||
Sbjct: 10995 catcttc 10989
>emb|BX255875.3 |CNS09S4W Oryza sativa chromosome 12, . BAC OSJNBa0018L16 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 151203
Score = 139 bits (70), Expect = 1e-29
Identities = 121/138 (87%)
Strand = Plus / Plus
Query: 176 ccttaggaggatctggtgccaactccatggggtcaacttcaaaaggccaaacatatcgtt 235
|||| |||||||||||||| | ||||||||| || ||||| |||||||| |||||||| |
Sbjct: 55709 cctttggaggatctggtgctagctccatgggatcgacttcgaaaggccagacatatcgct 55768
Query: 236 caggctgcccatttctcgccaagctccaatcatataatcttctctcttcctcggttgata 295
|||||| ||| |||| ||||| |||||||| ||||||||||||||||||||||| |||
Sbjct: 55769 caggctttccacttcttgccaaactccaatcgtataatcttctctcttcctcggtccata 55828
Query: 296 atatggtaaaagattcct 313
|||||||||||||||||
Sbjct: 55829 gtatggtaaaagattcct 55846
Score = 107 bits (54), Expect = 5e-20
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 466 aggccgcgcatcgccttctgcacgttggcggcggagatgagcgagtagggaggccgcgtg 525
||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct: 57305 aggccgcgcatcgccttctgcacgttgtcggcggagatgagcgagtacggcggccgcgtc 57364
Query: 526 gaattggcagcgccgccggcgacgtc 551
|| | || |||||||||||||||||
Sbjct: 57365 gacgtcgcggcgccgccggcgacgtc 57390
Score = 56.0 bits (28), Expect = 2e-04
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 319 aggtcatgttccttgctgatttcctcttcttccagtcctt 358
|||||||| |||||| |||||||||||||||||| |||||
Sbjct: 55945 aggtcatgctccttgttgatttcctcttcttccaatcctt 55984
Score = 54.0 bits (27), Expect = 6e-04
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 400 acctcatcggttgacgctaatctggtaattccaagcctcccatagtgatca 450
||||||||||| || ||| ||||||| || |||||||||||||| ||||||
Sbjct: 56875 acctcatcggtagaagctgatctggtgatcccaagcctcccataatgatca 56925
Score = 46.1 bits (23), Expect = 0.15
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 104 aggctacagaaattatgaaccatgtcaacaagaagtagccgacaagctttgtaggaaact 163
|||| ||||| | ||||||||||| || || |||||||| || |||||||| || ||||
Sbjct: 55441 aggcaacagatagtatgaaccatgccaggaaaaagtagccaaccagctttgttgggaact 55500
Query: 164 catcttc 170
|||||||
Sbjct: 55501 catcttc 55507
>dbj|AP006840.1 | Symbiobacterium thermophilum IAM 14863 DNA, complete genome
Length = 3566135
Score = 40.1 bits (20), Expect = 9.6
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 600 ggccgcggccctgccgtcggccgc 623
|||||||||||||||| |||||||
Sbjct: 764245 ggccgcggccctgccggcggccgc 764268
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,582,149
Number of Sequences: 3902068
Number of extensions: 5582149
Number of successful extensions: 115520
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 114973
Number of HSP's gapped (non-prelim): 547
length of query: 698
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 675
effective length of database: 17,143,297,704
effective search space: 11571725950200
effective search space used: 11571725950200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)