ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34f06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1V70K_TYMVA (P20131) 69 kDa protein 27 9.3
2ATA1_SYNY3 (P37367) Cation-transporting ATPase pma1 (EC 3.6.3.-) 27 9.3

>V70K_TYMVA (P20131) 69 kDa protein|
          Length = 628

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 15/29 (51%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +3

Query: 273 QSPI-LTQGQPRTPHRCPSRIRSEAFLRT 356
           Q P+ L Q  P TP   PS IR +AFL+T
Sbjct: 314 QRPVHLHQSGPHTPDFRPSGIRKDAFLQT 342



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>ATA1_SYNY3 (P37367) Cation-transporting ATPase pma1 (EC 3.6.3.-)|
          Length = 905

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = -2

Query: 372 FGVGWGFGGMPLNVF 328
           F VGWG GG PL +F
Sbjct: 264 FAVGWGRGGSPLEMF 278


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,422,972
Number of Sequences: 219361
Number of extensions: 709285
Number of successful extensions: 1816
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1816
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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