ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34f06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 123 4e-25
2dbj|AK070613.1| Oryza sativa (japonica cultivar-group) cDNA clon... 123 4e-25
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 123 4e-25
4emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa... 123 4e-25
5dbj|AK058298.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 2e-05
6gb|AC145271.4| Oryza sativa (japonica cultivar-group) chromosome... 42 1.3
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
8gb|AC113446.10| Mus musculus chromosome 5, clone RP23-258C6, com... 40 5.0
9gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
10gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
11gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosom... 40 5.0
12gb|AC137614.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
13gb|AC132488.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
14gb|AC093955.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
15gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
16gb|AC135919.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
17gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 5.0
18gb|AC006320.4| Homo sapiens PAC clone RP5-839O24 from 7, complet... 40 5.0
19gb|AC104276.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
20emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4,... 40 5.0
21emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4,... 40 5.0
22emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 40 5.0
23emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4,... 40 5.0
24emb|AL606600.3|OSJN00027 Oryza sativa genomic DNA, chromosome 4,... 40 5.0
25gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete... 40 5.0
26gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete... 40 5.0
27gb|AC147774.3| Medicago truncatula chromosome 2 BAC clone mth2-1... 40 5.0
28gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
29dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
30dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
31dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
32dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
33dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
34dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
35dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
36gb|AC145899.4| Pan troglodytes BAC clone RP43-19O5 from chromoso... 40 5.0
37dbj|AP003237.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
38dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
39dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
40dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
41dbj|AP003520.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
42dbj|AP004396.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
43dbj|AP005734.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
44dbj|AP003898.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.0
45gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 5.0
46emb|AL831799.3|CNS08CAC Oryza sativa chromosome 12, . BAC OSJNBa... 40 5.0
47emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4,... 40 5.0
48emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 40 5.0
49emb|AL844496.4|CNS08CAT Oryza sativa chromosome 12, . BAC OSJNBb... 40 5.0 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  123 bits (62), Expect = 4e-25
 Identities = 152/183 (83%)
 Strand = Plus / Minus

                                                                            
Query: 133      atactagccataaggacgagacttttcaacaagccctgacgaaacaagctttggtgcttc 192
                |||||| |||||||||||||| ||||||||| || |||  ||||||||  ||| ||||||
Sbjct: 19535514 atactatccataaggacgagatttttcaacacgctctggagaaacaaggcttgatgcttc 19535455

                                                                            
Query: 193      atccccttcagactttttctgannctnaatgccctgaaactggacccttgaagatcgata 252
                ||| ||||| | ||| ||||||  || |||||||||||||||||| || || || |||||
Sbjct: 19535454 atctccttcggtcttcttctgaaactcaatgccctgaaactggactctagacgagcgata 19535395

                                                                            
Query: 253      ttgacaaccataagcatttccaaagccccatcctaacccaaggccaaccccgcacccccc 312
                 ||||||||||| || || || |||||||| |||| |||||| ||||| || || |||||
Sbjct: 19535394 ctgacaaccatacgctttgccgaagccccaccctagcccaagaccaactccacatccccc 19535335

                   
Query: 313      acc 315
                |||
Sbjct: 19535334 acc 19535332



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 313      accgatgcccaagccgaatacgttcagaggcattcct 349
                ||||||||||||||| || |  |||||||||||||||
Sbjct: 19535251 accgatgcccaagccaaacatattcagaggcattcct 19535215



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 18266769 aggccaaccccgcacccccc 18266750



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 293     aggccaaccccgcacccccc 312
               ||||||||||||||||||||
Sbjct: 8967841 aggccaaccccgcacccccc 8967822
to top
>dbj|AK070613.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023063G03, full
           insert sequence
          Length = 575

 Score =  123 bits (62), Expect = 4e-25
 Identities = 152/183 (83%)
 Strand = Plus / Minus

                                                                       
Query: 133 atactagccataaggacgagacttttcaacaagccctgacgaaacaagctttggtgcttc 192
           |||||| |||||||||||||| ||||||||| || |||  ||||||||  ||| ||||||
Sbjct: 420 atactatccataaggacgagatttttcaacacgctctggagaaacaaggcttgatgcttc 361

                                                                       
Query: 193 atccccttcagactttttctgannctnaatgccctgaaactggacccttgaagatcgata 252
           ||| ||||| | ||| ||||||  || |||||||||||||||||| || || || |||||
Sbjct: 360 atctccttcggtcttcttctgaaactcaatgccctgaaactggactctagacgagcgata 301

                                                                       
Query: 253 ttgacaaccataagcatttccaaagccccatcctaacccaaggccaaccccgcacccccc 312
            ||||||||||| || || || |||||||| |||| |||||| ||||| || || |||||
Sbjct: 300 ctgacaaccatacgctttgccgaagccccaccctagcccaagaccaactccacatccccc 241

              
Query: 313 acc 315
           |||
Sbjct: 240 acc 238



 Score = 73.8 bits (37), Expect = 4e-10
 Identities = 54/60 (90%)
 Strand = Plus / Minus

                                                                       
Query: 313 accgatgcccaagccgaatacgttcagaggcattcctccgaacccccatccnactccgaa 372
           ||||||||||||||| || |  ||||||||||||||||||||||||||||| || |||||
Sbjct: 157 accgatgcccaagccaaacatattcagaggcattcctccgaacccccatccgacgccgaa 98
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  123 bits (62), Expect = 4e-25
 Identities = 152/183 (83%)
 Strand = Plus / Minus

                                                                            
Query: 133      atactagccataaggacgagacttttcaacaagccctgacgaaacaagctttggtgcttc 192
                |||||| |||||||||||||| ||||||||| || |||  ||||||||  ||| ||||||
Sbjct: 19461727 atactatccataaggacgagatttttcaacacgctctggagaaacaaggcttgatgcttc 19461668

                                                                            
Query: 193      atccccttcagactttttctgannctnaatgccctgaaactggacccttgaagatcgata 252
                ||| ||||| | ||| ||||||  || |||||||||||||||||| || || || |||||
Sbjct: 19461667 atctccttcggtcttcttctgaaactcaatgccctgaaactggactctagacgagcgata 19461608

                                                                            
Query: 253      ttgacaaccataagcatttccaaagccccatcctaacccaaggccaaccccgcacccccc 312
                 ||||||||||| || || || |||||||| |||| |||||| ||||| || || |||||
Sbjct: 19461607 ctgacaaccatacgctttgccgaagccccaccctagcccaagaccaactccacatccccc 19461548

                   
Query: 313      acc 315
                |||
Sbjct: 19461547 acc 19461545



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 313      accgatgcccaagccgaatacgttcagaggcattcct 349
                ||||||||||||||| || |  |||||||||||||||
Sbjct: 19461464 accgatgcccaagccaaacatattcagaggcattcct 19461428



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 18193090 aggccaaccccgcacccccc 18193071



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 293     aggccaaccccgcacccccc 312
               ||||||||||||||||||||
Sbjct: 8967724 aggccaaccccgcacccccc 8967705
to top
>emb|AL731759.2|CNS07YPA Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 144596

 Score =  123 bits (62), Expect = 4e-25
 Identities = 152/183 (83%)
 Strand = Plus / Minus

                                                                         
Query: 133   atactagccataaggacgagacttttcaacaagccctgacgaaacaagctttggtgcttc 192
             |||||| |||||||||||||| ||||||||| || |||  ||||||||  ||| ||||||
Sbjct: 67695 atactatccataaggacgagatttttcaacacgctctggagaaacaaggcttgatgcttc 67636

                                                                         
Query: 193   atccccttcagactttttctgannctnaatgccctgaaactggacccttgaagatcgata 252
             ||| ||||| | ||| ||||||  || |||||||||||||||||| || || || |||||
Sbjct: 67635 atctccttcggtcttcttctgaaactcaatgccctgaaactggactctagacgagcgata 67576

                                                                         
Query: 253   ttgacaaccataagcatttccaaagccccatcctaacccaaggccaaccccgcacccccc 312
              ||||||||||| || || || |||||||| |||| |||||| ||||| || || |||||
Sbjct: 67575 ctgacaaccatacgctttgccgaagccccaccctagcccaagaccaactccacatccccc 67516

                
Query: 313   acc 315
             |||
Sbjct: 67515 acc 67513



 Score = 42.1 bits (21), Expect = 1.3
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 313   accgatgcccaagccgaatacgttcagaggcattcct 349
             ||||||||||||||| || |  |||||||||||||||
Sbjct: 67432 accgatgcccaagccaaacatattcagaggcattcct 67396
to top
>dbj|AK058298.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-F07, full
           insert sequence
          Length = 248

 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 59/69 (85%)
 Strand = Plus / Minus

                                                                       
Query: 133 atactagccataaggacgagacttttcaacaagccctgacgaaacaagctttggtgcttc 192
           |||||| |||||||||||||| ||||||||| || |||  ||||||||  ||| ||||||
Sbjct: 81  atactatccataaggacgagatttttcaacacgctctggagaaacaaggcttgatgcttc 22

                    
Query: 193 atccccttc 201
           ||| |||||
Sbjct: 21  atctccttc 13
to top
>gb|AC145271.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone B1140B01,
             complete sequence
          Length = 135184

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 294   ggccaaccccgcaccccccac 314
             |||||||||||||||||||||
Sbjct: 30261 ggccaaccccgcaccccccac 30281
to top
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 294     ggccaaccccgcaccccccac 314
               |||||||||||||||||||||
Sbjct: 5497052 ggccaaccccgcaccccccac 5497072



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 13219346 aggccaaccccgcacccccc 13219327



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 11824164 aggccaaccccgcacccccc 11824183



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 11022138 aggccaaccccgcacccccc 11022119



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 293     aggccaaccccgcacccccc 312
               ||||||||||||||||||||
Sbjct: 3535108 aggccaaccccgcacccccc 3535089
to top
>gb|AC113446.10| Mus musculus chromosome 5, clone RP23-258C6, complete sequence
          Length = 158563

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 42    aaaatgctttcaaacaactttcca 65
             |||| |||||||||||||||||||
Sbjct: 93969 aaaaagctttcaaacaactttcca 93946
to top
>gb|AC119288.4| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0017J22,
              complete sequence
          Length = 177153

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    aggccaaccccgcacccccc 312
              ||||||||||||||||||||
Sbjct: 164590 aggccaaccccgcacccccc 164571
to top
>gb|AC135956.6| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0005H20, complete sequence
          Length = 135560

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 86593 aggccaaccccgcacccccc 86612
to top
>gb|AC116367.10| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0059H21 map R3342S, complete sequence
          Length = 133790

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 79492 aggccaaccccgcacccccc 79473
to top
>gb|AC137614.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0034O12,
              complete sequence
          Length = 156263

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    aggccaaccccgcacccccc 312
              ||||||||||||||||||||
Sbjct: 100739 aggccaaccccgcacccccc 100720
to top
>gb|AC132488.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0522C01,
             complete sequence
          Length = 136120

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 49428 aggccaaccccgcacccccc 49409
to top
>gb|AC093955.2| Oryza sativa (japonica cultivar-group) chromosome 5 BAC clone
             OJ1240_E09, complete sequence
          Length = 118742

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 53295 aggccaaccccgcacccccc 53276
to top
>gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0479C09,
              complete sequence
          Length = 156776

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    aggccaaccccgcacccccc 312
              ||||||||||||||||||||
Sbjct: 149804 aggccaaccccgcacccccc 149823
to top
>gb|AC135919.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0014F09,
             complete sequence
          Length = 151345

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 45445 aggccaaccccgcacccccc 45464
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 29399377 aggccaaccccgcacccccc 29399358



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 293     aggccaaccccgcacccccc 312
               ||||||||||||||||||||
Sbjct: 8587508 aggccaaccccgcacccccc 8587489
to top
>gb|AC006320.4| Homo sapiens PAC clone RP5-839O24 from 7, complete sequence
          Length = 94793

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   attgtatgatcgcagttata 135
             ||||||||||||||||||||
Sbjct: 34795 attgtatgatcgcagttata 34814
to top
>gb|AC104276.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1231_F08,
              complete sequence
          Length = 118049

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    aggccaaccccgcacccccc 312
              ||||||||||||||||||||
Sbjct: 102391 aggccaaccccgcacccccc 102372
to top
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
              complete sequence
          Length = 188317

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    aggccaaccccgcacccccc 312
              ||||||||||||||||||||
Sbjct: 174172 aggccaaccccgcacccccc 174153
to top
>emb|AL662996.3|OSJN00198 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0015N08,
             complete sequence
          Length = 129037

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 39842 aggccaaccccgcacccccc 39823
to top
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
             complete sequence
          Length = 179644

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 22231 aggccaaccccgcacccccc 22212
to top
>emb|AL606690.3|OSJN00080 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060D06,
             complete sequence
          Length = 151506

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 78176 aggccaaccccgcacccccc 78157
to top
>emb|AL606600.3|OSJN00027 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0067G20,
             complete sequence
          Length = 145825

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 63403 aggccaaccccgcacccccc 63384
to top
>gb|AC090436.37| Chlamydomonas reinhardtii clone cr-3h1, complete sequence
          Length = 102653

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 295  gccaaccccgcaccccccaccgatgccc 322
            |||||| ||||||||||| |||||||||
Sbjct: 2505 gccaacgccgcaccccccgccgatgccc 2532
to top
>gb|AC090434.43| Chlamydomonas reinhardtii clone cr-1j6, complete sequence
          Length = 127686

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 295   gccaaccccgcaccccccaccgatgccc 322
             |||||| ||||||||||| |||||||||
Sbjct: 87130 gccaacgccgcaccccccgccgatgccc 87157
to top
>gb|AC147774.3| Medicago truncatula chromosome 2 BAC clone mth2-10c8, complete sequence
          Length = 110758

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 42    aaaatgctttcaaacaactt 61
             ||||||||||||||||||||
Sbjct: 40372 aaaatgctttcaaacaactt 40353
to top
>gb|AC135206.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1041F02,
             complete sequence
          Length = 137327

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 68480 aggccaaccccgcacccccc 68461
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 33305915 aggccaaccccgcacccccc 33305896



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 30564134 aggccaaccccgcacccccc 30564115



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 29885479 aggccaaccccgcacccccc 29885460



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 19082247 aggccaaccccgcacccccc 19082228



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 16102653 aggccaaccccgcacccccc 16102634



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 12045937 aggccaaccccgcacccccc 12045918
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 27766180 aggccaaccccgcacccccc 27766199
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 20536379 aggccaaccccgcacccccc 20536360



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 15776753 aggccaaccccgcacccccc 15776772
to top
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 27978028 aggccaaccccgcacccccc 27978047
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 15739448 aggccaaccccgcacccccc 15739429
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 29490799 aggccaaccccgcacccccc 29490780



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 293     aggccaaccccgcacccccc 312
               ||||||||||||||||||||
Sbjct: 8585343 aggccaaccccgcacccccc 8585324
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 31459098 aggccaaccccgcacccccc 31459079



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    aggccaaccccgcacccccc 312
              ||||||||||||||||||||
Sbjct: 471470 aggccaaccccgcacccccc 471489
to top
>gb|AC145899.4| Pan troglodytes BAC clone RP43-19O5 from chromosome 7, complete
             sequence
          Length = 176118

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   attgtatgatcgcagttata 135
             ||||||||||||||||||||
Sbjct: 65169 attgtatgatcgcagttata 65188
to top
>dbj|AP003237.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0046E05
          Length = 162776

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 53162 aggccaaccccgcacccccc 53143
to top
>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0453E03
          Length = 159980

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    aggccaaccccgcacccccc 312
              ||||||||||||||||||||
Sbjct: 141386 aggccaaccccgcacccccc 141405
to top
>dbj|AP003825.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1343_D04
          Length = 143407

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 67362 aggccaaccccgcacccccc 67381
to top
>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0482C06
          Length = 182779

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    aggccaaccccgcacccccc 312
              ||||||||||||||||||||
Sbjct: 111671 aggccaaccccgcacccccc 111690
to top
>dbj|AP003520.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0021H10
          Length = 142659

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 75086 aggccaaccccgcacccccc 75067
to top
>dbj|AP004396.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0404D10
          Length = 155069

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 91209 aggccaaccccgcacccccc 91228
to top
>dbj|AP005734.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBb0032E15
          Length = 120419

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 40340 aggccaaccccgcacccccc 40321
to top
>dbj|AP003898.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1663_D06
          Length = 139103

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 10751 aggccaaccccgcacccccc 10732
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 293      aggccaaccccgcacccccc 312
                ||||||||||||||||||||
Sbjct: 27790168 aggccaaccccgcacccccc 27790187
to top
>emb|AL831799.3|CNS08CAC Oryza sativa chromosome 12, . BAC OSJNBa0087A02 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 177034

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    aggccaaccccgcacccccc 312
              ||||||||||||||||||||
Sbjct: 104225 aggccaaccccgcacccccc 104244
to top
>emb|AL662981.3|OSJN00182 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0086O06,
              complete sequence
          Length = 178552

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 293    aggccaaccccgcacccccc 312
              ||||||||||||||||||||
Sbjct: 166402 aggccaaccccgcacccccc 166383
to top
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
             complete sequence
          Length = 151936

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 15768 aggccaaccccgcacccccc 15749
to top
>emb|AL844496.4|CNS08CAT Oryza sativa chromosome 12, . BAC OSJNBb0026N09 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 135462

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 293   aggccaaccccgcacccccc 312
             ||||||||||||||||||||
Sbjct: 36610 aggccaaccccgcacccccc 36591


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,349,201
Number of Sequences: 3902068
Number of extensions: 2349201
Number of successful extensions: 47998
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47476
Number of HSP's gapped (non-prelim): 522
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top