>RL36C_ARATH (Q9LZ57) 60S ribosomal protein L36-3|
          Length = 108

 Score =  129 bits (325), Expect = 4e-30
 Identities = 65/78 (83%), Positives = 72/78 (92%)
 Frame = -2

Query: 545 PSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKK 366
           P++RKGK +KR  F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+
Sbjct: 25  PNNRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKR 84

Query: 365 KREEMSSVLRKMRSAGTG 312
           KREEMSSVLRKMRS G G
Sbjct: 85  KREEMSSVLRKMRSGGAG 102

>RL36A_ARATH (O80929) 60S ribosomal protein L36-1|
          Length = 113

 Score =  128 bits (322), Expect = 9e-30
 Identities = 65/76 (85%), Positives = 69/76 (90%)
 Frame = -2

Query: 545 PSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKK 366
           P+ RKGK +KR  F+R LIREVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+
Sbjct: 29  PNSRKGKTSKRTIFIRKLIREVAGMAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKR 88

Query: 365 KREEMSSVLRKMRSAG 318
           KREEMSSVLRKMRS G
Sbjct: 89  KREEMSSVLRKMRSLG 104

>RL36B_ARATH (Q9M352) 60S ribosomal protein L36-2|
          Length = 112

 Score =  127 bits (320), Expect = 2e-29
 Identities = 65/78 (83%), Positives = 70/78 (89%)
 Frame = -2

Query: 545 PSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKK 366
           P  RKGK +KR  F+R+LI+EVAG APYEKRITELLKVGKDKRALKVAKRKLGTHKRAK+
Sbjct: 29  PRSRKGKTSKRTIFIRNLIKEVAGQAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKR 88

Query: 365 KREEMSSVLRKMRSAGTG 312
           KREEMSSVLRKMRS G G
Sbjct: 89  KREEMSSVLRKMRSGGGG 106

>RL36_ENTCP (Q9LRB8) 60S ribosomal protein L36|
          Length = 101

 Score =  108 bits (271), Expect = 8e-24
 Identities = 54/78 (69%), Positives = 66/78 (84%)
 Frame = -2

Query: 545 PSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKK 366
           PS RKG  ++RV  VR+++REVAG+APYE+R+ ELLKVGKDKRALK+ KRKLGTH R KK
Sbjct: 23  PSRRKGFLSQRVKKVRAVVREVAGWAPYERRVMELLKVGKDKRALKMCKRKLGTHMRGKK 82

Query: 365 KREEMSSVLRKMRSAGTG 312
           KREEM+ VLRKM++A  G
Sbjct: 83  KREEMAGVLRKMQAASKG 100

>RL36_PONPY (Q5RAZ9) 60S ribosomal protein L36|
          Length = 104

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 48/74 (64%), Positives = 58/74 (78%)
 Frame = -2

Query: 542 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 363
           S R+G+ TK   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+K
Sbjct: 26  SRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRK 85

Query: 362 REEMSSVLRKMRSA 321
           REE+S+VL  MR A
Sbjct: 86  REELSNVLAAMRKA 99

>RL36_HUMAN (Q9Y3U8) 60S ribosomal protein L36|
          Length = 104

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 48/74 (64%), Positives = 58/74 (78%)
 Frame = -2

Query: 542 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 363
           S R+G+ TK   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+K
Sbjct: 26  SRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRK 85

Query: 362 REEMSSVLRKMRSA 321
           REE+S+VL  MR A
Sbjct: 86  REELSNVLAAMRKA 99

>RL36_BOVIN (Q3T171) 60S ribosomal protein L36|
          Length = 104

 Score = 97.1 bits (240), Expect = 3e-20
 Identities = 48/74 (64%), Positives = 58/74 (78%)
 Frame = -2

Query: 542 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 363
           S R+G+ TK   FVR +IREV GFAPYE+R  ELLKV KDKRALK  K+++GTH RAK+K
Sbjct: 26  SRRRGRLTKHTKFVRDMIREVCGFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRK 85

Query: 362 REEMSSVLRKMRSA 321
           REE+S+VL  MR A
Sbjct: 86  REELSNVLAAMRKA 99

>RL36_RAT (P39032) 60S ribosomal protein L36|
          Length = 104

 Score = 94.7 bits (234), Expect = 1e-19
 Identities = 47/74 (63%), Positives = 57/74 (77%)
 Frame = -2

Query: 542 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 363
           S R+G+ TK   FVR +IREV  FAPYE+R  ELLKV KDKRALK  K+++GTH RAK+K
Sbjct: 26  SRRRGRLTKHTKFVRDMIREVCAFAPYERRAMELLKVSKDKRALKFIKKRVGTHIRAKRK 85

Query: 362 REEMSSVLRKMRSA 321
           REE+S+VL  MR A
Sbjct: 86  REELSNVLAAMRKA 99

>RL36_DAUCA (P52866) 60S ribosomal protein L36|
          Length = 106

 Score = 94.0 bits (232), Expect = 2e-19
 Identities = 47/63 (74%), Positives = 53/63 (84%)
 Frame = -2

Query: 545 PSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKK 366
           PSDRKGK +KR HFVR+LIREVAGF PYEKRITELLKVGKDKRALKV + K+G H +  K
Sbjct: 29  PSDRKGKTSKRTHFVRNLIREVAGFXPYEKRITELLKVGKDKRALKVRQEKVG-HSQESK 87

Query: 365 KRE 357
           + E
Sbjct: 88  EEE 90



 Score = 43.5 bits (101), Expect = 4e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = -1

Query: 402 EAKVGHPQEGQEEERGDVQCPQEDEICWYW 313
           + KVGH QE +EEERGDVQC   DE  W+W
Sbjct: 77  QEKVGHSQESKEEERGDVQCSPPDE-GWWW 105

>RL36A_SCHPO (Q92365) 60S ribosomal protein L36-A|
          Length = 99

 Score = 92.0 bits (227), Expect = 9e-19
 Identities = 45/75 (60%), Positives = 61/75 (81%)
 Frame = -2

Query: 545 PSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKK 366
           PS RKG+ +KR  FVRS++REVAGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK 
Sbjct: 24  PSRRKGQLSKRTSFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKG 83

Query: 365 KREEMSSVLRKMRSA 321
           K EE++SV++  R A
Sbjct: 84  KIEELTSVIQSSRLA 98

>RL36_DROME (P49630) 60S ribosomal protein L36 (Protein minute(1)1B)|
          Length = 115

 Score = 91.3 bits (225), Expect = 2e-18
 Identities = 44/69 (63%), Positives = 54/69 (78%)
 Frame = -2

Query: 521 TKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSV 342
           T+   F+R L+REV G APYEKR  ELLKV KDKRALK  KR+LGTH RAK+KREE+S++
Sbjct: 44  TRHTKFMRDLVREVVGHAPYEKRTMELLKVSKDKRALKFLKRRLGTHIRAKRKREELSNI 103

Query: 341 LRKMRSAGT 315
           L ++R A T
Sbjct: 104 LTQLRKAQT 112

>RL36B_SCHPO (O94658) 60S ribosomal protein L36-B|
          Length = 99

 Score = 90.9 bits (224), Expect = 2e-18
 Identities = 45/75 (60%), Positives = 60/75 (80%)
 Frame = -2

Query: 545 PSDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKK 366
           PS RKG  +KR  FVRS++REVAGFAPYE+R+ EL++  +DKRA K+AK++LGT KRAK 
Sbjct: 24  PSRRKGHLSKRTAFVRSIVREVAGFAPYERRVMELIRNSQDKRARKLAKKRLGTLKRAKG 83

Query: 365 KREEMSSVLRKMRSA 321
           K EE++SV++  R A
Sbjct: 84  KIEELTSVIQSSRLA 98

>RL36_MOUSE (P47964) 60S ribosomal protein L36|
          Length = 104

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 44/74 (59%), Positives = 54/74 (72%)
 Frame = -2

Query: 542 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 363
           S R+ + T    FVR +IREV GFAPYE+R  ELLKV K KRALK  K+++GTH RAK+K
Sbjct: 26  SRRRSRLTNHTKFVRDMIREVCGFAPYERRAMELLKVSKSKRALKFIKKRVGTHIRAKRK 85

Query: 362 REEMSSVLRKMRSA 321
           REE+S+VL  M  A
Sbjct: 86  REELSNVLAAMEEA 99

>RL36_CAEEL (P49181) 60S ribosomal protein L36|
          Length = 103

 Score = 88.6 bits (218), Expect = 1e-17
 Identities = 39/71 (54%), Positives = 54/71 (76%)
 Frame = -2

Query: 533 KGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREE 354
           KG  +K+   VR L+RE+ GFAPYE+R+ E+L++ KDKRALK  KR++GTH+RAK KREE
Sbjct: 31  KGVASKKTKIVRELVREITGFAPYERRVLEMLRISKDKRALKFLKRRIGTHRRAKGKREE 90

Query: 353 MSSVLRKMRSA 321
           + +V+   R A
Sbjct: 91  LQNVIIAQRKA 101

>RL36_CANAL (P47834) 60S ribosomal protein L36 (L39)|
          Length = 99

 Score = 82.4 bits (202), Expect = 8e-16
 Identities = 39/72 (54%), Positives = 56/72 (77%)
 Frame = -2

Query: 542 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 363
           S RKG  ++R  FVRS+++EVAG APYE+R+ EL++   +KRA K+AK++LGTHKRA +K
Sbjct: 26  SYRKGASSQRTVFVRSIVKEVAGLAPYERRLIELIRNAGEKRAKKLAKKRLGTHKRALRK 85

Query: 362 REEMSSVLRKMR 327
            EEM+ V+ + R
Sbjct: 86  VEEMTQVIAESR 97

>RL36_TRIHM (Q9HFR7) 60S ribosomal protein L36 (TRP36)|
          Length = 105

 Score = 79.0 bits (193), Expect = 8e-15
 Identities = 39/74 (52%), Positives = 54/74 (72%)
 Frame = -2

Query: 542 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 363
           S  KG  +KR  FVR +++EVAG APYE+R+ ELL+  KDKRA K+AK++LGT  RAK+K
Sbjct: 31  SRTKGHLSKRTAFVREVVKEVAGLAPYERRVIELLRNSKDKRARKLAKKRLGTFGRAKRK 90

Query: 362 REEMSSVLRKMRSA 321
            +E+  V+ + R A
Sbjct: 91  VDELQRVIAESRRA 104

>RL36B_YEAST (O14455) 60S ribosomal protein L36-B (L39B) (YL39)|
          Length = 99

 Score = 75.5 bits (184), Expect = 9e-14
 Identities = 35/72 (48%), Positives = 53/72 (73%)
 Frame = -2

Query: 542 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 363
           S +KG  + R  FVRSL+RE+AG +PYE+R+ +L++   +KRA KVAK++LG+  RAK K
Sbjct: 26  SYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAK 85

Query: 362 REEMSSVLRKMR 327
            EEM++++   R
Sbjct: 86  VEEMNNIIAASR 97

>RL36A_YEAST (P05745) 60S ribosomal protein L36-A (L39A) (YL39)|
          Length = 99

 Score = 75.5 bits (184), Expect = 9e-14
 Identities = 35/72 (48%), Positives = 53/72 (73%)
 Frame = -2

Query: 542 SDRKGKGTKRVHFVRSLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKK 363
           S +KG  + R  FVRSL+RE+AG +PYE+R+ +L++   +KRA KVAK++LG+  RAK K
Sbjct: 26  SYKKGAASNRTKFVRSLVREIAGLSPYERRLIDLIRNSGEKRARKVAKKRLGSFTRAKAK 85

Query: 362 REEMSSVLRKMR 327
            EEM++++   R
Sbjct: 86  VEEMNNIIAASR 97

>ORN_PSESM (Q87VI6) Oligoribonuclease (EC 3.1.-.-)|
          Length = 178

 Score = 32.3 bits (72), Expect = 0.89
 Identities = 15/57 (26%), Positives = 26/57 (45%)
 Frame = +1

Query: 295 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNFRFATFRARLSLPTLRSSVIRFSY 465
           + +  +P   +    R LD+S+L  LA  W P  +F      L+L  +R S+    +
Sbjct: 114 FLYRHMPALENYFHYRNLDVSTLKELAARWAPELKFKKGSTHLALDDIRESIAELRF 170

>RS6_ICTPU (Q90YR8) 40S ribosomal protein S6|
          Length = 249

 Score = 31.2 bits (69), Expect = 2.0
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -2

Query: 470 APYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMS 348
           A Y K + + LK  K+KR  K+AKR+  +  RA + + E S
Sbjct: 207 AEYAKLLAKRLKEAKEKRQEKIAKRRRLSSLRASQSKSESS 247

>ORN_PASMU (P57885) Oligoribonuclease (EC 3.1.-.-)|
          Length = 184

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = +1

Query: 295 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSVIRFSY 465
           + F  +P  AD    R LD+S+L  LA  W P+    F      L+L  +R S+   +Y
Sbjct: 115 FLFKYMPELADYFHYRHLDVSTLKELASRWKPDVLKGFTKKNTHLALDDIRESIAELAY 173

>ORN_MANSM (Q65SE1) Oligoribonuclease (EC 3.1.-.-)|
          Length = 186

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +1

Query: 295 YFFFSVPVPADLIFLRTLDISSLFFLALLWVPNF--RFATFRARLSLPTLRSSVIRFSY 465
           + F  +P  AD    R LD+S+L  LA  W P     F      L+L  +R S+   +Y
Sbjct: 115 FLFKYMPELADYFHYRHLDVSTLKELARRWKPELLNGFEKKNTHLALDDIRESIAELAY 173

>SRP54_AQUAE (O67615) Signal recognition particle protein (Fifty-four homolog)|
          Length = 454

 Score = 30.4 bits (67), Expect = 3.4
 Identities = 13/55 (23%), Positives = 29/55 (52%)
 Frame = -2

Query: 482 VAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSAG 318
           +    P E+R  +++ + + KR  + +   +    +  K+ EEM  ++RK++ AG
Sbjct: 371 INSMTPEERRNPKIINMSRKKRIARGSGTTVSDVNKLLKRYEEMKKMMRKLQKAG 425

>TBX22_HUMAN (Q9Y458) T-box transcription factor TBX22 (T-box protein 22)|
          Length = 520

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
 Frame = +2

Query: 239 KNWPPEQKIAINFTSLGYSTSSSRFQYQQISSS*GHWTSPLSSSW-PSCGCPTFASPPSE 415
           + +P      ++F + G  T S       ++SS G   SPL+S   P C  P F  P S 
Sbjct: 296 ETYPWRPSFTLDFKTFGADTQSGSSGSSPVTSS-GGAPSPLNSLLSPLCFSPMFHLPTSS 354

Query: 416 HAYPC 430
              PC
Sbjct: 355 LGMPC 359

>SN1L2_HUMAN (Q9H0K1) Serine/threonine-protein kinase SNF1-like kinase 2 (EC|
           2.7.11.1) (Qin-induced kinase)
          Length = 926

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 353 SPLSSSWPSCGCPTFASPPSEHAYPCQ 433
           +PL  S+ +C  P+ ASP  ++  PCQ
Sbjct: 840 APLQFSYQTCELPSAASPAPDYPTPCQ 866

>ASSY_LACPL (P59603) Argininosuccinate synthase (EC 6.3.4.5)|
           (Citrulline--aspartate ligase)
          Length = 411

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 351 VQCPQEDEICWYWNREEEVEYPK 283
           ++ P  D   W+W+REEE++Y K
Sbjct: 142 IEAPVRD---WHWSREEEIDYAK 161

>Y1220_SULTO (Q972A7) Hypothetical protein ST1220|
          Length = 163

 Score = 28.9 bits (63), Expect = 9.9
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = -2

Query: 446 ELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMR 327
           E  +V   K  +K AKRK    KRA KK++  S   RK R
Sbjct: 122 EFSEVKPKKEKIKKAKRKKKGAKRASKKQKAKSKSARKSR 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,083,589
Number of Sequences: 219361
Number of extensions: 1556430
Number of successful extensions: 4913
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 4746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4904
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4373119116
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)