>Y4105_ARATH (Q9M158) Putative protein At4g01050|
          Length = 466

 Score = 37.0 bits (84), Expect = 0.048
 Identities = 16/57 (28%), Positives = 32/57 (56%)
 Frame = -3

Query: 564 KISYLKRIGKGSNIVVMDSYGDNSKIVAKTLNSVGFKNCWVMAGGFSGRKGWAQSRL 394
           K+S   +  + + + ++D +  NS++VA+ +   GFK+ + +  G  G +GW  S L
Sbjct: 190 KLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAEGPRGWLNSSL 246

>YDNAA_RICMO (P0A3K3) Hypothetical 14.4 kDa protein in dnaA 5'region|
          Length = 123

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 504 GDNSKIVAKTLNSVGFKNCWVMAGGFSGR---KGWAQSRL 394
           G  S I A  + ++G+KNC+ ++ GF G    KGW Q+ L
Sbjct: 80  GYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNL 119

>Y915_RICCN (P0A3K2) Hypothetical protein RC0915|
          Length = 123

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 504 GDNSKIVAKTLNSVGFKNCWVMAGGFSGR---KGWAQSRL 394
           G  S I A  + ++G+KNC+ ++ GF G    KGW Q+ L
Sbjct: 80  GYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNL 119

>Y600_RICRI (Q9AKI4) Hypothetical protein RP600 homolog|
          Length = 123

 Score = 35.4 bits (80), Expect = 0.14
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 504 GDNSKIVAKTLNSVGFKNCWVMAGGFSGR---KGWAQSRL 394
           G  S I A  + ++G+KNC+ ++ GF G    KGW Q+ L
Sbjct: 80  GYRSFIAANFITNIGYKNCYNISDGFEGNNQDKGWKQNNL 119

>Y600_RICPR (Q9ZCV8) Hypothetical protein RP600|
          Length = 123

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = -3

Query: 504 GDNSKIVAKTLNSVGFKNCWVMAGGFSGR---KGWAQSRL 394
           G  S I A  + ++G+KNC+ ++ GF G    KGW Q+ L
Sbjct: 80  GYRSFIAANFIANIGYKNCYNISDGFEGNNQDKGWKQNNL 119

>RT31_MOUSE (Q61733) 28S ribosomal protein S31, mitochondrial precursor (S31mt)|
           (MRP-S31) (Imogen 38)
          Length = 384

 Score = 34.7 bits (78), Expect = 0.24
 Identities = 15/46 (32%), Positives = 27/46 (58%)
 Frame = +2

Query: 422 PENPPAMTQQFLNPTLLSVLATIFELSPYESMTTMLEPLPILLRYE 559
           PE+PP    +FL+P L++  + + +  P++  TT  E L  L ++E
Sbjct: 129 PEDPPKKRNEFLSPELVAAASAVADSLPFDKQTTKSELLRQLQQHE 174

>AAC6_ENTAE (P50858) Aminoglycoside N(6')-acetyltransferase type 1 (EC|
           2.3.1.82) (AAC(6'))
          Length = 152

 Score = 33.1 bits (74), Expect = 0.70
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 334 RNHPRRLDDFYNGKVVGIRPKAALRPPFPAGESAGHDPAVLEPHAVECLGHNL 492
           + H   + +F +GKV   RP A L    P GE+ G     + P+A EC   N+
Sbjct: 32  QEHQSEIAEFLSGKVA--RPAAVLIAVAPDGEALGFAELSIRPYAEECYSGNV 82

>GLPE_HAEIN (P44819) Thiosulfate sulfurtransferase glpE (EC 2.8.1.1)|
          Length = 105

 Score = 32.7 bits (73), Expect = 0.91
 Identities = 19/50 (38%), Positives = 28/50 (56%)
 Frame = -3

Query: 531 SNIVVMDSYGDNSKIVAKTLNSVGFKNCWVMAGGFSGRKGWAQSRLGTDS 382
           S I+V   +G +S+ VA  L   G+KN + M GGF    GW ++ L  D+
Sbjct: 57  SPIIVSCYHGVSSRNVATFLVEQGYKNVFSMIGGFD---GWCRAELPIDT 103

>UBA4_YEAST (P38820) E1-like URM1 activator protein (Ubiquitin-like protein|
           activator 4)
          Length = 440

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -3

Query: 627 PNKIKGMVRNAKRAEAEIAALKISYLKRIGKGSNIVVMDSYGDNSKIVAKTL-NSVGFKN 451
           P  +   ++N +    ++  L+   L  + K SNIV++  YG++S++  + L +  GF N
Sbjct: 360 PEAVNIPIKNLRDMNGDLKKLQ-EKLPSVEKDSNIVILCRYGNDSQLATRLLKDKFGFSN 418

Query: 450 CWVMAGGF 427
              + GG+
Sbjct: 419 VRDVRGGY 426

>GPR44_HUMAN (Q9Y5Y4) Putative G-protein coupled receptor 44 (Chemoattractant|
           receptor-homologous molecule expressed on Th2 cells)
           (CD294 antigen)
          Length = 395

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 24/56 (42%), Positives = 28/56 (50%)
 Frame = +2

Query: 266 RSLRVVLEGVEVDDTVTNLSAAAGITRDGLMTSTTERL*ESVPRRLCAHPFRPENP 433
           RSLR VLE V VDD  + L  A    R    TS+T R   + P  LC+ P  P  P
Sbjct: 317 RSLRTVLESVLVDD--SELGGAGSSRR--RRTSSTAR--SASPLALCSRPEEPRGP 366

>AROA_ARCFU (O28775) Probable 3-phosphoshikimate 1-carboxyvinyltransferase (EC|
           2.5.1.19) (5-enolpyruvylshikimate-3-phosphate synthase)
           (EPSP synthase) (EPSPS)
          Length = 416

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
 Frame = -3

Query: 624 NKIKGMVRNAKRAEAEIAALKISYLKRIGKGSNIVVMDSYGDNSKIVAKT----LNSVGF 457
           ++I+G+ +N K    E   LK   + + GKG    V+DS+GD+   +A +    L  V  
Sbjct: 330 DRIEGIHQNLKALGVESKPLKDGLIIKGGKGEFRGVVDSFGDHRMALAFSLLGLLGEVKC 389

Query: 456 KNCWVMAGGFSG 421
           +N  V++  F G
Sbjct: 390 RNAEVVSVSFPG 401

>FIMB_DICDI (P54680) Fimbrin|
          Length = 610

 Score = 30.0 bits (66), Expect = 5.9
 Identities = 21/79 (26%), Positives = 37/79 (46%)
 Frame = -3

Query: 567 LKISYLKRIGKGSNIVVMDSYGDNSKIVAKTLNSVGFKNCWVMAGGFSGRKGWAQSRLGT 388
           L +S L ++ +G  I ++ +   + K +A   + V   N  + A G     G+  S + T
Sbjct: 475 LTLSILWQLMRGHVISILTALSGSGKPIADA-DIVNVANSKLSAAGKKQISGFKDSTIST 533

Query: 387 DSYNLSVVEVIKPSRVIPA 331
               L V+E ++P  V PA
Sbjct: 534 GIPILDVIEAVRPGSVDPA 552

>ORC3_HUMAN (Q9UBD5) Origin recognition complex subunit 3 (Origin recognition|
           complex subunit Latheo)
          Length = 711

 Score = 29.6 bits (65), Expect = 7.7
 Identities = 18/76 (23%), Positives = 38/76 (50%)
 Frame = +1

Query: 4   SQTVHVLCDNFFDSFQQLNLIALNPLSNFAQIAMCPRYLRRFLLRMLDKQFAALTSYKLQ 183
           SQ + VLC N  ++ +++N ++ N   N  ++    RY+ +   +  +KQ A LT+ +  
Sbjct: 338 SQPLSVLCCNLPEAKRRINFLSNNQCENIRRLPSFRRYVEK---QASEKQVALLTNERYL 394

Query: 184 NKSWKFSEMILHFFRV 231
            +  +     LH + +
Sbjct: 395 KEETQLLLENLHVYHM 410


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,343,435
Number of Sequences: 219361
Number of extensions: 1604116
Number of successful extensions: 5263
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5254
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5824436538
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)