ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33p19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY476807.1| Oryza sativa extracellular calcium sensing recept... 337 3e-89
2ref|XM_467599.1| Oryza sativa (japonica cultivar-group), mRNA 331 2e-87
3dbj|AK058726.1| Oryza sativa (japonica cultivar-group) cDNA clon... 331 2e-87
4gb|AY105162.1| Zea mays PCO100489 mRNA sequence 285 9e-74
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 192 1e-45
6dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic D... 192 1e-45
7gb|AC024224.33| Homo sapiens 12 BAC RP11-133L14 (Roswell Park Ca... 44 0.55
8ref|XM_478422.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.2
9ref|XM_478421.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.2
10ref|XM_506371.1| PREDICTED Oryza sativa (japonica cultivar-group... 42 2.2
11gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome 42 2.2
12gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome 42 2.2
13gb|CP000316.1| Polaromonas sp. JS666, complete genome 42 2.2
14gb|AC104125.3| Homo sapiens chromosome 5 clone RP11-432G16, comp... 42 2.2
15dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
16dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
17dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
18dbj|AK099296.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
19dbj|AK071773.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
20dbj|AK063798.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
21gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 2.2
22gb|AC158359.2| Mus musculus BAC clone RP23-412H3 from chromosome... 42 2.2
23gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 8.6
24gb|AC138682.14| Mus musculus chromosome 5, clone RP23-34L23, com... 40 8.6
25gb|DP000012.1| Macropus eugenii target 1 genomic scaffold 40 8.6
26gb|AF405554.1| Cryptosporidium parvum hypothetical protein gene,... 40 8.6
27gb|AC131709.3| Mus musculus BAC clone RP23-198J15 from 18, compl... 40 8.6
28emb|Z86064.2|HS435D1 Human DNA sequence from clone RP3-435D1 on ... 40 8.6
29gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, compl... 40 8.6
30emb|AL714006.13| Mouse DNA sequence from clone RP23-173E15 on ch... 40 8.6
31gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome... 40 8.6
32gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence 40 8.6
33gb|AC117273.41| Papio anubis clone rp41-167h10, complete sequence 40 8.6
34gb|DQ173295.1| Ictalurus punctatus CC chemokine SCYA121 gene, co... 40 8.6
35gb|AF355575.1| Azospirillum brasilense strain Sp7 beta-hydroxybu... 40 8.6
36ref|XM_625875.1| Cryptosporidium parvum Iowa II cryptosporidium ... 40 8.6
37dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.6
38gb|AC131102.3| Mus musculus BAC clone RP23-101H16 from chromosom... 40 8.6
39gb|AC007385.3| Homo sapiens BAC clone RP11-325M10 from 2, comple... 40 8.6
40gb|AE005042.1| Halobacterium sp. NRC-1 section 73 of 170 of the ... 40 8.6
41gb|AC147533.3| Macropus eugenii clone ME_KBa-311C4, complete seq... 40 8.6
42emb|AL929372.16| Mouse DNA sequence from clone RP23-461G6 on chr... 40 8.6
43gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.6
44gb|AC132131.4| Mus musculus BAC clone RP23-356D16 from 10, compl... 40 8.6 
>gb|AY476807.1| Oryza sativa extracellular calcium sensing receptor (CaS) mRNA,
            complete cds
          Length = 1196

 Score =  337 bits (170), Expect = 3e-89
 Identities = 278/314 (88%)
 Strand = Plus / Minus

                                                                        
Query: 309  ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 368
            ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 1118 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 1059

                                                                        
Query: 369  cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 428
            | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 1058 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 999

                                                                        
Query: 429  atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 488
            | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 998  agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 939

                                                                        
Query: 489  tctttgagttgtcaccgtacgagtccatgacgacgatgttggagcccttgccgatcctct 548
            |||| ||| |||| |  ||||||||||||| || || |||||||||||||||||||||||
Sbjct: 938  tcttcgagctgtcgcaatacgagtccatgatgatgacgttggagcccttgccgatcctct 879

                                                                        
Query: 549  tgaggtacgagatcttcagcgcggcgatctccgcctctgctcgcttcgcgttgcgcacca 608
            ||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 878  tgaggtaggagatcttcagcgcggcgatctccgcctcggcttgtttcgcgttgcgcacca 819

                          
Query: 609  tgccctttatcttg 622
            ||| ||| ||||||
Sbjct: 818  tgctcttcatcttg 805
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>ref|XM_467599.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1164

 Score =  331 bits (167), Expect = 2e-87
 Identities = 269/303 (88%)
 Strand = Plus / Minus

                                                                        
Query: 309  ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 368
            ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 1099 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 1040

                                                                        
Query: 369  cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 428
            | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 1039 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 980

                                                                        
Query: 429  atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 488
            | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 979  agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 920

                                                                        
Query: 489  tctttgagttgtcaccgtacgagtccatgacgacgatgttggagcccttgccgatcctct 548
            |||| ||| |||| |  ||||||||||||| || || |||||||||||||||||||||||
Sbjct: 919  tcttcgagctgtcgcaatacgagtccatgatgatgacgttggagcccttgccgatcctct 860

                                                                        
Query: 549  tgaggtacgagatcttcagcgcggcgatctccgcctctgctcgcttcgcgttgcgcacca 608
            ||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 859  tgaggtaggagatcttcagcgcggcgatctccgcctcggcttgtttcgcgttgcgcacca 800

               
Query: 609  tgc 611
            |||
Sbjct: 799  tgc 797
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>dbj|AK058726.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F04, full
           insert sequence
          Length = 1153

 Score =  331 bits (167), Expect = 2e-87
 Identities = 269/303 (88%)
 Strand = Plus / Minus

                                                                       
Query: 309 ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 368
           ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 931 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 872

                                                                       
Query: 369 cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 428
           | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 871 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 812

                                                                       
Query: 429 atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 488
           | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 811 agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 752

                                                                       
Query: 489 tctttgagttgtcaccgtacgagtccatgacgacgatgttggagcccttgccgatcctct 548
           |||| ||| |||| |  ||||||||||||| || || |||||||||||||||||||||||
Sbjct: 751 tcttcgagctgtcgcaatacgagtccatgatgatgacgttggagcccttgccgatcctct 692

                                                                       
Query: 549 tgaggtacgagatcttcagcgcggcgatctccgcctctgctcgcttcgcgttgcgcacca 608
           ||||||| ||||||||||||||||||||||||||||| ||| | ||||||||||||||||
Sbjct: 691 tgaggtaggagatcttcagcgcggcgatctccgcctcggcttgtttcgcgttgcgcacca 632

              
Query: 609 tgc 611
           |||
Sbjct: 631 tgc 629
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>gb|AY105162.1| Zea mays PCO100489 mRNA sequence
          Length = 737

 Score =  285 bits (144), Expect = 9e-74
 Identities = 255/292 (87%)
 Strand = Plus / Plus

                                                                       
Query: 338 atcacccgcgacggcttgatgacttctacaacggaaaggttgtaggaatccgtcccaagg 397
           ||||| || |||||| ||| |||||| || ||||| ||||||||||||||||| || || 
Sbjct: 332 atcacacgtgacggcgtgacgacttcgaccacggataggttgtaggaatccgttccgaga 391

                                                                       
Query: 398 cggctctgcgcccaccctttccggccggagaatccgccggccatgacccagcagttcttg 457
           |||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 392 cggctctgcgcccaccctttccggccagagaagccgccggccatgacccagcagttcttg 451

                                                                       
Query: 458 aaccccacgctgttgagtgtcttggccacaatctttgagttgtcaccgtacgagtccatg 517
           |||||||||||||  || ||||| |||||| |||| | |  ||| | |||||||||||||
Sbjct: 452 aaccccacgctgtccagcgtcttcgccacagtcttggcgacgtcgctgtacgagtccatg 511

                                                                       
Query: 518 acgacgatgttggagcccttgccgatcctcttgaggtacgagatcttcagcgcggcgatc 577
           | || || |||||||||||| |||||| |||||||||| || |||||||| |||||||||
Sbjct: 512 atgatgacgttggagccctttccgatcttcttgaggtaggatatcttcagagcggcgatc 571

                                                               
Query: 578 tccgcctctgctcgcttcgcgttgcgcaccatgccctttatcttgttcggaa 629
           |||||||| |||  |||||||||||||||||||||||| | |||| ||||||
Sbjct: 572 tccgcctcggctttcttcgcgttgcgcaccatgcccttcagcttgctcggaa 623
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  192 bits (97), Expect = 1e-45
 Identities = 169/193 (87%)
 Strand = Plus / Plus

                                                                            
Query: 309      ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 368
                ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 30380623 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 30380682

                                                                            
Query: 369      cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 428
                | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 30380683 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 30380742

                                                                            
Query: 429      atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 488
                | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 30380743 agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 30380802

                             
Query: 489      tctttgagttgtc 501
                |||| ||| ||||
Sbjct: 30380803 tcttcgagctgtc 30380815



 Score =  153 bits (77), Expect = 8e-34
 Identities = 98/105 (93%)
 Strand = Plus / Plus

                                                                            
Query: 507      acgagtccatgacgacgatgttggagcccttgccgatcctcttgaggtacgagatcttca 566
                |||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 30380912 acgagtccatgatgatgacgttggagcccttgccgatcctcttgaggtaggagatcttca 30380971

                                                             
Query: 567      gcgcggcgatctccgcctctgctcgcttcgcgttgcgcaccatgc 611
                ||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 30380972 gcgcggcgatctccgcctcggcttgtttcgcgttgcgcaccatgc 30381016
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>dbj|AP005751.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0072H09
          Length = 160541

 Score =  192 bits (97), Expect = 1e-45
 Identities = 169/193 (87%)
 Strand = Plus / Plus

                                                                         
Query: 309   ccgtcacgaacctttcagcggccgccggaatcacccgcgacggcttgatgacttctacaa 368
             ||||||||| ||  ||||||||||| ||||| |||||||||||| ||| |||||| || |
Sbjct: 61483 ccgtcacgagccgatcagcggccgcaggaattacccgcgacggcgtgacgacttcgacga 61542

                                                                         
Query: 369   cggaaaggttgtaggaatccgtcccaaggcggctctgcgcccaccctttccggccggaga 428
             | || |||||||| || |||||||| || |||||||||||||||||||||| ||||||||
Sbjct: 61543 ccgacaggttgtacgagtccgtcccgagccggctctgcgcccaccctttcctgccggaga 61602

                                                                         
Query: 429   atccgccggccatgacccagcagttcttgaaccccacgctgttgagtgtcttggccacaa 488
             | ||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| |
Sbjct: 61603 agccgccggccatgacccagcagttcttgaatccgacgctgttgagcgtcttcgccacga 61662

                          
Query: 489   tctttgagttgtc 501
             |||| ||| ||||
Sbjct: 61663 tcttcgagctgtc 61675



 Score =  153 bits (77), Expect = 8e-34
 Identities = 98/105 (93%)
 Strand = Plus / Plus

                                                                         
Query: 507   acgagtccatgacgacgatgttggagcccttgccgatcctcttgaggtacgagatcttca 566
             |||||||||||| || || |||||||||||||||||||||||||||||| ||||||||||
Sbjct: 61772 acgagtccatgatgatgacgttggagcccttgccgatcctcttgaggtaggagatcttca 61831

                                                          
Query: 567   gcgcggcgatctccgcctctgctcgcttcgcgttgcgcaccatgc 611
             ||||||||||||||||||| ||| | |||||||||||||||||||
Sbjct: 61832 gcgcggcgatctccgcctcggcttgtttcgcgttgcgcaccatgc 61876
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>gb|AC024224.33| Homo sapiens 12 BAC RP11-133L14 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 165414

 Score = 44.1 bits (22), Expect = 0.55
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 195  gaaattcagtgaaatgattctg 216
            ||||||||||||||||||||||
Sbjct: 9334 gaaattcagtgaaatgattctg 9313
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>ref|XM_478422.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 872

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 418 ccggccggagaatccgccggccatg 442
           |||||||||||||||||| ||||||
Sbjct: 4   ccggccggagaatccgcctgccatg 28
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>ref|XM_478421.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 787

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 418 ccggccggagaatccgccggccatg 442
           |||||||||||||||||| ||||||
Sbjct: 7   ccggccggagaatccgcctgccatg 31
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>ref|XM_506371.1| PREDICTED Oryza sativa (japonica cultivar-group),
           OSJNBa0036M16.111-2 mRNA
          Length = 801

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 418 ccggccggagaatccgccggccatg 442
           |||||||||||||||||| ||||||
Sbjct: 54  ccggccggagaatccgcctgccatg 78
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>gb|CP000360.1| Acidobacteria bacterium Ellin345, complete genome
          Length = 5650368

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 462     ccacgctgttgagtgtcttggccac 486
               ||||||||||||| |||||||||||
Sbjct: 5275319 ccacgctgttgagggtcttggccac 5275295
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>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome
          Length = 3402093

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 418    ccggccggagaatccgccggc 438
              |||||||||||||||||||||
Sbjct: 531190 ccggccggagaatccgccggc 531210
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 564    tcagcgcggcgatctccgcct 584
              |||||||||||||||||||||
Sbjct: 805196 tcagcgcggcgatctccgcct 805176
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>gb|AC104125.3| Homo sapiens chromosome 5 clone RP11-432G16, complete sequence
          Length = 180225

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 8     aaacagtgcatgttctttgtgacaa 32
             |||||||||||||||||||| ||||
Sbjct: 20732 aaacagtgcatgttctttgtcacaa 20756
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 418      ccggccggagaatccgccggccatg 442
                |||||||||||||||||| ||||||
Sbjct: 19881976 ccggccggagaatccgcctgccatg 19882000
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>dbj|AP005103.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0036M16
          Length = 158880

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 418   ccggccggagaatccgccggccatg 442
             |||||||||||||||||| ||||||
Sbjct: 46626 ccggccggagaatccgcctgccatg 46650
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>dbj|AP005320.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0650C03
          Length = 144337

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 418    ccggccggagaatccgccggccatg 442
              |||||||||||||||||| ||||||
Sbjct: 122135 ccggccggagaatccgcctgccatg 122159
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>dbj|AK099296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138P10, full
           insert sequence
          Length = 787

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 418 ccggccggagaatccgccggccatg 442
           |||||||||||||||||| ||||||
Sbjct: 7   ccggccggagaatccgcctgccatg 31
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>dbj|AK071773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111H14, full
           insert sequence
          Length = 800

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 418 ccggccggagaatccgccggccatg 442
           |||||||||||||||||| ||||||
Sbjct: 54  ccggccggagaatccgcctgccatg 78
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>dbj|AK063798.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-F05, full
           insert sequence
          Length = 872

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 418 ccggccggagaatccgccggccatg 442
           |||||||||||||||||| ||||||
Sbjct: 4   ccggccggagaatccgcctgccatg 28
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                        
Query: 331     cgccggaatcacccgcgacggcttg 355
               |||||| ||||||||||||||||||
Sbjct: 3708033 cgccggcatcacccgcgacggcttg 3708009
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>gb|AC158359.2| Mus musculus BAC clone RP23-412H3 from chromosome 13, complete sequence
          Length = 210045

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 198   attcagtgaaatgattctgca 218
             |||||||||||||||||||||
Sbjct: 60957 attcagtgaaatgattctgca 60937
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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 340     cacccgcgacggcttgatga 359
               ||||||||||||||||||||
Sbjct: 1503519 cacccgcgacggcttgatga 1503538
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>gb|AC138682.14| Mus musculus chromosome 5, clone RP23-34L23, complete sequence
          Length = 241585

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 240   tttttcagttgtccacactg 259
             ||||||||||||||||||||
Sbjct: 92153 tttttcagttgtccacactg 92172
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>gb|DP000012.1| Macropus eugenii target 1 genomic scaffold
          Length = 1996640

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    ttacagaacaagagttggaa 197
              ||||||||||||||||||||
Sbjct: 817557 ttacagaacaagagttggaa 817538
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>gb|AF405554.1| Cryptosporidium parvum hypothetical protein gene, partial cds;
             hypothetical protein and polyketide synthase (PKS1) genes,
             complete cds; and aminopeptidase (AP1) gene, partial cds
          Length = 43339

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   ttcagagttcagatcatttt 242
             ||||||||||||||||||||
Sbjct: 29453 ttcagagttcagatcatttt 29434
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>gb|AC131709.3| Mus musculus BAC clone RP23-198J15 from 18, complete sequence
          Length = 164456

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 6     acaaacagtgcatgttcttt 25
             ||||||||||||||||||||
Sbjct: 90313 acaaacagtgcatgttcttt 90294
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>emb|Z86064.2|HS435D1 Human DNA sequence from clone RP3-435D1 on chromosome Xq25 Contains the
              3' end of the HS6ST2 gene for heparan sulfate
              6-O-sulfotransferase 2, a novel gene and the 3' end of a
              novel gene, complete sequence
          Length = 184975

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 195    gaaattcagtgaaatgattc 214
              ||||||||||||||||||||
Sbjct: 142994 gaaattcagtgaaatgattc 142975
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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 566     agcgcggcgatctccgcctc 585
               ||||||||||||||||||||
Sbjct: 2356248 agcgcggcgatctccgcctc 2356229
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>emb|AL714006.13| Mouse DNA sequence from clone RP23-173E15 on chromosome 4 Contains a
             novel gene and the 3' end of a novel gene, complete
             sequence
          Length = 196097

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 200   tcagtgaaatgattctgcat 219
             ||||||||||||||||||||
Sbjct: 57593 tcagtgaaatgattctgcat 57574
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>gb|AC145395.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0047M04, complete sequence
          Length = 109523

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 188   agagttggaaattcagtgaa 207
             ||||||||||||||||||||
Sbjct: 32045 agagttggaaattcagtgaa 32026
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>gb|AC118584.18| Papio anubis clone rp41-78d16, complete sequence
          Length = 189610

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     taaacccattatctaatttt 90
              ||||||||||||||||||||
Sbjct: 121613 taaacccattatctaatttt 121632
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>gb|AC117273.41| Papio anubis clone rp41-167h10, complete sequence
          Length = 184931

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    taaacccattatctaatttt 90
             ||||||||||||||||||||
Sbjct: 28679 taaacccattatctaatttt 28660
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>gb|DQ173295.1| Ictalurus punctatus CC chemokine SCYA121 gene, complete cds
          Length = 2362

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 201  cagtgaaatgattctgcatt 220
            ||||||||||||||||||||
Sbjct: 1268 cagtgaaatgattctgcatt 1249
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>gb|AF355575.1| Azospirillum brasilense strain Sp7 beta-hydroxybutyrate
           dehydrogenase (hbdH) gene, complete cds
          Length = 786

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 564 tcagcgcggcgatctccgcc 583
           ||||||||||||||||||||
Sbjct: 223 tcagcgcggcgatctccgcc 204
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>ref|XM_625875.1| Cryptosporidium parvum Iowa II cryptosporidium polyketide synthase
             (cgd4_2900), partial mRNA
          Length = 40242

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   ttcagagttcagatcatttt 242
             ||||||||||||||||||||
Sbjct: 27387 ttcagagttcagatcatttt 27368
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 188      agagttggaaattcagtgaa 207
                ||||||||||||||||||||
Sbjct: 27080992 agagttggaaattcagtgaa 27080973
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>gb|AC131102.3| Mus musculus BAC clone RP23-101H16 from chromosome 5, complete sequence
          Length = 208536

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 240    tttttcagttgtccacactg 259
              ||||||||||||||||||||
Sbjct: 113825 tttttcagttgtccacactg 113844
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>gb|AC007385.3| Homo sapiens BAC clone RP11-325M10 from 2, complete sequence
          Length = 188062

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 184    aacaagagttggaaattcag 203
              ||||||||||||||||||||
Sbjct: 113988 aacaagagttggaaattcag 114007
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>gb|AE005042.1| Halobacterium sp. NRC-1 section 73 of 170 of the complete genome
          Length = 10615

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 277  agtcgtcctggagggagtcg 296
            ||||||||||||||||||||
Sbjct: 5427 agtcgtcctggagggagtcg 5408
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>gb|AC147533.3| Macropus eugenii clone ME_KBa-311C4, complete sequence
          Length = 153357

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    ttacagaacaagagttggaa 197
              ||||||||||||||||||||
Sbjct: 120563 ttacagaacaagagttggaa 120544
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>emb|AL929372.16| Mouse DNA sequence from clone RP23-461G6 on chromosome 2, complete
             sequence
          Length = 170342

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   ctgcatttcttcagagttca 233
             ||||||||||||||||||||
Sbjct: 24010 ctgcatttcttcagagttca 24029
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 188      agagttggaaattcagtgaa 207
                ||||||||||||||||||||
Sbjct: 27408045 agagttggaaattcagtgaa 27408026
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>gb|AC132131.4| Mus musculus BAC clone RP23-356D16 from 10, complete sequence
          Length = 170192

 Score = 40.1 bits (20), Expect = 8.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   gaaatgattctgcatttctt 224
             ||||||||||||||||||||
Sbjct: 47973 gaaatgattctgcatttctt 47992


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,932,781
Number of Sequences: 3902068
Number of extensions: 4932781
Number of successful extensions: 91147
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 90696
Number of HSP's gapped (non-prelim): 450
length of query: 629
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 606
effective length of database: 17,143,297,704
effective search space: 10388838408624
effective search space used: 10388838408624
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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