>AMPN_ECOLI (P04825) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 869

 Score =  130 bits (326), Expect = 4e-30
 Identities = 70/143 (48%), Positives = 93/143 (65%), Gaps = 2/143 (1%)
 Frame = -3

Query: 571  KDALLDFYN-KWQQDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIG 395
            +DAL+  Y+ KW Q+ LV+ KWF LQATS     +  VR LL H +F M NPN++ SLIG
Sbjct: 727  RDALMQEYDDKWHQNGLVMDKWFILQATSPAANVLETVRGLLQHRSFTMSNPNRIRSLIG 786

Query: 394  GFCGS-PVSFHAKDGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQ 218
             F GS P +FHA+DGSGY FL E++  L+  NPQVASR++    R +RYD  RQ   +A 
Sbjct: 787  AFAGSNPAAFHAEDGSGYLFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDAKRQEKMRAA 846

Query: 217  LEMIISANGLSENVYEIASKSLA 149
            LE +     LS ++YE  +K+LA
Sbjct: 847  LEQLKGLENLSGDLYEKITKALA 869

>AMPN_HAEIN (P45274) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 869

 Score =  117 bits (293), Expect = 2e-26
 Identities = 60/142 (42%), Positives = 91/142 (64%), Gaps = 2/142 (1%)
 Frame = -3

Query: 571  KDALL-DFYNKWQQDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIG 395
            +D LL DF  KWQ D LV+ KWFALQAT      +  ++ L+ HP+F+  NPN++ SL+G
Sbjct: 727  RDVLLADFEQKWQHDGLVMDKWFALQATRPDDNVLEIIQLLMDHPSFNFNNPNRLRSLVG 786

Query: 394  GFCGSPV-SFHAKDGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQ 218
             F    + +FH   GSGY+FL +V+++L++ NPQVA+R++    R+ R+D  RQ L K  
Sbjct: 787  SFANHNLKAFHNVSGSGYRFLTDVLIRLNESNPQVAARLIEPLIRFSRFDAQRQTLMKRA 846

Query: 217  LEMIISANGLSENVYEIASKSL 152
            LE +     LS++++E   K+L
Sbjct: 847  LERLSVVENLSKDLFEKIEKAL 868

>AMPN_CAUCR (P37893) Aminopeptidase N (EC 3.4.11.2) (Alpha-aminoacylpeptide|
            hydrolase)
          Length = 863

 Score =  114 bits (285), Expect = 2e-25
 Identities = 58/145 (40%), Positives = 85/145 (58%), Gaps = 1/145 (0%)
 Frame = -3

Query: 583  GQVRKDALLDFYNKWQQDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYS 404
            G  R+ AL  F++ W+ + LV+ KWFA+Q     P  +  V  L  HP F+  NPN++ +
Sbjct: 718  GVPREKALESFHHAWRTEPLVLDKWFAVQGRDPNPDALERVIALTQHPDFEPTNPNRLRA 777

Query: 403  LIGGFCG-SPVSFHAKDGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALA 227
            L+  F   +P  FH   G+GY FL + +L++D  NP  A+R+V     WRRY      L 
Sbjct: 778  LVSTFANFNPARFHDPSGAGYAFLADEILKVDAFNPMTAARLVEPLGGWRRYKPELGDLM 837

Query: 226  KAQLEMIISANGLSENVYEIASKSL 152
            +AQLE I++   LS+NV E+ASK+L
Sbjct: 838  RAQLERIVAHPNLSKNVLELASKAL 862

>AMP1_PLAFQ (O96935) M1-family aminopeptidase (EC 3.4.11.-) (Pfa-M1)|
          Length = 1085

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 36/127 (28%), Positives = 61/127 (48%)
 Frame = -3

Query: 550  YNKWQQDYLVVSKWFALQATSDIPGNVANVRKLLAHPAFDMRNPNKVYSLIGGFCGSPVS 371
            Y   + D L++ +W    + SD       ++KL      D +NPN + ++   F  +   
Sbjct: 950  YKLSKDDELLLQEWLKTVSRSDRKDIYEILKKLENEVLKDSKNPNDIRAVYLPFTNNLRR 1009

Query: 370  FHAKDGSGYKFLGEVVLQLDKINPQVASRMVSAFSRWRRYDETRQALAKAQLEMIISANG 191
            FH   G GYK + EV+ + DK NP VA+++   F  W + D  RQ L   ++  ++    
Sbjct: 1010 FHDISGKGYKLIAEVITKTDKFNPMVATQLCEPFKLWNKLDTKRQELMLNEMNTMLQEPN 1069

Query: 190  LSENVYE 170
            +S N+ E
Sbjct: 1070 ISNNLKE 1076

>POLG_PSBMV (P29152) Genome polyprotein [Contains: P1 proteinase (N-terminal|
           protein); Helper component proteinase (EC 3.4.22.45)
           (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic
           inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2
           (6K2); Viral ge
          Length = 3206

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
 Frame = -3

Query: 463 VRKLLAHPAFDMRNPNKVYSLIGGFCGSPVSFHAKDGSGYKFLGEVVLQLDKINPQVASR 284
           +R+ + +  FDM N  KV+ LIG         H +DG        V   L+++N  + + 
Sbjct: 500 LRQRIKNTTFDMGNNTKVHELIG---------HRQDG--------VFRHLNRLNNSILAA 542

Query: 283 MVSAFSRWRRYDETRQALAKAQLEMI--ISANGLSENVYEIASKS 155
             S+   W   +E+   LA+   +    I++ G+S    +I++K+
Sbjct: 543 NGSSTIEWESMNESLLELARWHNKRTESIASGGISSFRNKISAKA 587

>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC|
            2.7.7.6) (MtRPOL)
          Length = 1230

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 18/57 (31%), Positives = 25/57 (43%)
 Frame = +1

Query: 13   TIVACYFTHAKYSRIYSVKYTFRALVMVKGSTGRIKFVSLHQETKLPDFSRLSHRHF 183
            T + CY     +  ++   +T  A V V     R +FV LH E  L D SR   + F
Sbjct: 1135 TALHCYRKGLTFVSVHDCYWTHAADVSVMNQVCREQFVRLHSEPILQDLSRFLVKRF 1191

>BMAL1_HUMAN (O00327) Aryl hydrocarbon receptor nuclear translocator-like|
           protein 1 (Brain and muscle ARNT-like 1) (Member of PAS
           protein 3) (Basic-helix-loop-helix-PAS orphan MOP3)
           (bHLH-PAS protein JAP3)
          Length = 626

 Score = 29.6 bits (65), Expect = 6.7
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 14/95 (14%)
 Frame = +1

Query: 208 SSPTGP*QELVSSRHISSIERMLTP-----CGMPPEDLFCR------AVK---QLHPRTC 345
           SS T P + L+ ++    ++  +TP     C       FCR      +VK   +  P TC
Sbjct: 210 SSDTAPRERLIDAKTGLPVKTDITPGPSRLCSGARRSFFCRMKCNRPSVKVEDKDFPSTC 269

Query: 346 NQNHLSRENSQVTHKSLQLKSIPCSDSACQKQDEP 450
           ++    R++    H +  LKS P +     + +EP
Sbjct: 270 SKKKADRKSFCTIHSTGYLKSWPPTKMGLDEDNEP 304


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,145,895
Number of Sequences: 219361
Number of extensions: 1841762
Number of successful extensions: 4612
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4609
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)