ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal8e12 |
|---|---|
| Clone Library Name | barley_pub |
>YCF45_PORPU (P51281) Hypothetical 64.2 kDa protein ycf45 (ORF565)| Length = 565 Score = 181 bits (460), Expect = 2e-45 Identities = 86/150 (57%), Positives = 116/150 (77%), Gaps = 1/150 (0%) Frame = -2 Query: 747 RMQVLEPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLIGTAHGERLA 568 RMQV +P +QH+VMIEAVENHMPEV+I+DEIGTE EA A R+IAERGV L+GTAHG L Sbjct: 180 RMQVAQPDLQHQVMIEAVENHMPEVIIIDEIGTELEALAARTIAERGVQLVGTAHGNYLE 239 Query: 567 NIIKNPVLSDLVGGVETVTLGDEEARARRTQKSILERKAPPTFPFLIEMRERHYWVTH-R 391 ++IKNP L+DL+GG++ VTLGD+EA+ R TQKSILERKA P F IE+ +R W+ H + Sbjct: 240 SLIKNPTLADLIGGIQYVTLGDDEAKRRGTQKSILERKAAPAFQIAIEIHDRKAWIVHEK 299 Query: 390 TERSVDMLLHGKKPLVEVRKRDNEFQVIIE 301 E ++D +L G +P V+ R+ + +++I+ Sbjct: 300 VEETIDQILQGHQPFVQKRQIQDNGRILIK 329
>YCF45_ODOSI (P49540) Hypothetical 51.9 kDa protein ycf45 (ORF455)| Length = 455 Score = 157 bits (397), Expect = 3e-38 Identities = 77/140 (55%), Positives = 102/140 (72%), Gaps = 1/140 (0%) Frame = -2 Query: 747 RMQVLEPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLIGTAHGERLA 568 RMQV +QH++MIEAVENHMP+V+++DEIGTE EA A R+IAE+GV L+GT HG L Sbjct: 180 RMQVATTDLQHQIMIEAVENHMPQVIVIDEIGTELEALAARTIAEKGVQLVGTTHGNCLE 239 Query: 567 NIIKNPVLSDLVGGVETVTLGDEEARARRTQKSILERKAPPTFPFLIEMRERHYWVTHR- 391 N+IKNP LSDL+GG+++VTL D+EA+ R TQKSI+ERKA P F IE+ + W H Sbjct: 240 NLIKNPPLSDLIGGIQSVTLSDDEAKRRGTQKSIIERKAYPAFQIAIEINTENSWTIHED 299 Query: 390 TERSVDMLLHGKKPLVEVRK 331 + S+D+LL +VR+ Sbjct: 300 IKSSIDLLLRKSFTGTQVRE 319
>YCF45_CYACA (O19920) Hypothetical 37.9 kDa protein ycf45| Length = 335 Score = 131 bits (330), Expect = 2e-30 Identities = 69/139 (49%), Positives = 96/139 (69%), Gaps = 1/139 (0%) Frame = -2 Query: 747 RMQVLEPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLIGTAHGERLA 568 RM+V + QH VMIEA+ENH PE++I+DEIGTE E+QA SI++RG+ LIG+AH L Sbjct: 180 RMEVQSINSQHEVMIEAIENHTPEIIIIDEIGTEYESQAAISISQRGIRLIGSAHSSDLF 239 Query: 567 NIIKNPVLSDLVGGVETVTLGDEEARARRTQKSILERKAPPTFPFLIEM-RERHYWVTHR 391 N+ KNP L LVGG+E+VTL D +A R+T+K+ILERK F IE+ ++R V Sbjct: 240 NLAKNPTLCKLVGGIESVTLSDTQAILRKTKKTILERKGCSCFNATIEINKKRTVKVYTS 299 Query: 390 TERSVDMLLHGKKPLVEVR 334 E+S+D +L G+ ++R Sbjct: 300 VEQSIDAILEGRVNNSQIR 318
>SP3AA_BACSU (Q01367) Stage III sporulation protein AA| Length = 307 Score = 43.5 bits (101), Expect = 7e-04 Identities = 23/71 (32%), Positives = 39/71 (54%) Frame = -2 Query: 747 RMQVLEPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLIGTAHGERLA 568 R+ VL+ + ++ + + PEV+IVDEIG + A GV +I +AHG ++ Sbjct: 196 RIDVLDACPKAEGLMMMIRSMSPEVMIVDEIGRMEDTDALLEALHAGVSVIVSAHGWSIS 255 Query: 567 NIIKNPVLSDL 535 +++K P L L Sbjct: 256 DLMKRPSLKRL 266
>CBIO_BIFLO (Q8G838) Cobalt import ATP-binding/permease protein cbiO| Length = 780 Score = 33.1 bits (74), Expect = 0.94 Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 12/108 (11%) Frame = -2 Query: 735 LEPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQA-------CRSIAERGVMLIGTAH-- 583 L Q I V P+V+I+DE +AQA R++ RGV ++ H Sbjct: 432 LSGGQQRLAAIAGVLACNPDVLIMDEPTASLDAQAKKRIHELLRTLKSRGVTVLIITHDR 491 Query: 582 --GERLAN-IIKNPVLSDLVGGVETVTLGDEEARARRTQKSILERKAP 448 E++A+ +++ P+ + GG T T+ + + S++ R P Sbjct: 492 EEAEQIADRVVRMPIAAPASGGPVTATVTEPAVSSNGPAHSVIHRLDP 539
>AHR_MUSMC (Q8R4S6) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 848 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 373 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 546 I +P SP+ DP+ N RK W + P + +F +S S LI + +S Y Sbjct: 410 ISSPFSPIMDPLPIRTKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIY------- 462 Query: 547 NWILYNVCKPFSVGSTNKHY 606 +C P S + H+ Sbjct: 463 ------LCPPSSPAPLDSHF 476
>AHR_MOUSE (P30561) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 848 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 373 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 546 I +P SP+ DP+ N RK W + P + +F +S S LI + +S Y Sbjct: 410 ISSPFSPIMDPLPIRTKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIY------- 462 Query: 547 NWILYNVCKPFSVGSTNKHY 606 +C P S + H+ Sbjct: 463 ------LCPPSSPAPLDSHF 476
>AHR_MUSSP (Q8R4S2) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 854 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 373 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 546 I +P SP+ DP+ N RK W + P + +F +S S LI + +S Y Sbjct: 414 ISSPFSPIMDPLPIRTKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIY------- 466 Query: 547 NWILYNVCKPFSVGSTNKHY 606 +C P S + H+ Sbjct: 467 ------LCPPSSPAPLDSHF 480
>AHR_MUSSI (Q8R4S4) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 854 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 373 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 546 I +P SP+ DP+ N RK W + P + +F +S S LI + +S Y Sbjct: 414 ISSPFSPIMDPLPIRTKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIY------- 466 Query: 547 NWILYNVCKPFSVGSTNKHY 606 +C P S + H+ Sbjct: 467 ------LCPPSSPAPLDSHF 480
>AHR_MUSMM (Q8R4S5) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 883 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 373 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 546 I +P SP+ DP+ N RK W + P + +F +S S LI + +S Y Sbjct: 410 ISSPFSPIMDPLPIRTKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIY------- 462 Query: 547 NWILYNVCKPFSVGSTNKHY 606 +C P S + H+ Sbjct: 463 ------LCPPSSPAPLDSHF 476
>AHR_MUSCR (Q8R4S7) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 854 Score = 32.3 bits (72), Expect = 1.6 Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 2/80 (2%) Frame = +1 Query: 373 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 546 I +P SP+ DP+ N RK W + P + +F +S S LI + +S Y Sbjct: 414 ISSPFSPIMDPLPIRAKSNTSRKDWAPQSTPSKDSFHPSSLMSALIQQDESIY------- 466 Query: 547 NWILYNVCKPFSVGSTNKHY 606 +C P S + H+ Sbjct: 467 ------LCPPSSPAPLDSHF 480
>AHR_RAT (P41738) Aryl hydrocarbon receptor precursor (Ah receptor) (AhR)| Length = 853 Score = 32.0 bits (71), Expect = 2.1 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 2/80 (2%) Frame = +1 Query: 373 IDTPLSPMSDPIVSLPHLNKKRKCW--RGLPLQYTFLSTSCTSFLITKSDSFYSSNQVR* 546 I +P SP+ DP+ N RK W + P + +F S S LI + +S Y Sbjct: 414 ISSPFSPIMDPLPIRTKSNTSRKDWAPQSTPSKDSFHPNSLMSALIQQDESIY------- 466 Query: 547 NWILYNVCKPFSVGSTNKHY 606 +C P S + H+ Sbjct: 467 ------LCPPSSPAPLDSHF 480
>DRD1_RAT (P18901) D(1A) dopamine receptor| Length = 446 Score = 30.8 bits (68), Expect = 4.7 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = +2 Query: 536 KSDKTGFFIMFASLSPWAVPISITPLSAIDRQACASDSVPISSTMTTSGIWFSTASIITL 715 +S T FF++ ++S V + + P A+ A P + I STASI+ L Sbjct: 54 RSKVTNFFVISLAVSDLLVAVLVMPWKAVAEIAGFWPLGPFCNIWVAFDIMCSTASILNL 113 Query: 716 CCI 724 C I Sbjct: 114 CVI 116
>CARB_BACHD (Q9K9V9) Carbamoyl-phosphate synthase pyrimidine-specific large chain| (EC 6.3.5.5) (Carbamoyl-phosphate synthetase ammonia chain) Length = 1062 Score = 30.8 bits (68), Expect = 4.7 Identities = 53/228 (23%), Positives = 92/228 (40%), Gaps = 22/228 (9%) Frame = -2 Query: 708 MIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLIGTAHGERLANIIKNPVLSDLVG 529 ++ V PE VIV + G ++ +A RGV +IGTA + ++ LV Sbjct: 618 VMHIVNLEQPEGVIV-QFGGQTAINLASELAARGVKIIGTALEDMDRAEDRDKFEQTLVE 676 Query: 528 GVETVTLGDEEARARRTQKSILERKAPPTFPFLIE----MRERHYWVTHRTERSVDMLLH 361 LGD A + + I ER +P L+ + R + ++ E ++ + H Sbjct: 677 LNIPQPLGD-TATSIEEARQIAERIG---YPVLVRPSYVLGGRAMEIVYKEEELLNYMAH 732 Query: 360 GKKPLVEVRKRDNEFQVIIERWAT---------YDGDGL*IPRFQVVISPAMLHFLPTCG 208 K + + V+I+R+ T DG+ + IP I A +H + Sbjct: 733 AVKV-------NPKHPVLIDRYLTGKELEVDAISDGENVYIPGIMEHIERAGVHSGDSIA 785 Query: 207 LCGYPVQILSSMLF*GRMERSWFLK---------FVEFIWHKIVILLL 91 + YP Q + L +ER+ L ++F+WHK + +L Sbjct: 786 V--YPPQTVPESLKQKLIERTIELARGLRIVGLLNIQFVWHKDDVYVL 831
>LEU3_CHLTE (P59028) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 352 Score = 30.4 bits (67), Expect = 6.1 Identities = 20/85 (23%), Positives = 42/85 (49%) Frame = -2 Query: 747 RMQVLEPSMQHRVMIEAVENHMPEVVIVDEIGTESEAQACRSIAERGVMLIGTAHGERLA 568 + VLE S R ++ V PE+ +VD + Q R+ + V++ G+ L+ Sbjct: 188 KANVLEVSQFWRNIVHEVHQDFPEIELVDMYVDNAAMQVVRNPKQFEVIVTSNLFGDILS 247 Query: 567 NIIKNPVLSDLVGGVETVTLGDEEA 493 +I + +++ +G + + ++G E A Sbjct: 248 DI--SGMITGSLGMLPSASIGSEHA 270
>KDPD_MYCTU (P96372) Sensor protein kdpD (EC 2.7.13.3)| Length = 860 Score = 30.4 bits (67), Expect = 6.1 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%) Frame = -2 Query: 705 IEAVENHMPEVVIVDEIG--------TESEAQACRSIAERGVMLIGTAHGERLANIIKNP 550 +EAV P+VV+VDE+ Q + I + G+ +I T + + L + N Sbjct: 99 VEAVLRRHPQVVLVDELAHTNTPGSKNPKRWQDVQEILDAGITVISTVNIQHLEGL--ND 156 Query: 549 VLSDLVGGVETVTLGDEEARA 487 V+ + G + + DE RA Sbjct: 157 VVEQITGIEQKEKIPDEIVRA 177 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 109,231,937 Number of Sequences: 219361 Number of extensions: 2298474 Number of successful extensions: 5615 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5455 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5613 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7876239983 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
