| Clone Name | rbaal34e13 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK100173.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023026N03, full insert sequence Length = 1378 Score = 391 bits (197), Expect = e-105 Identities = 289/319 (90%), Gaps = 3/319 (0%) Strand = Plus / Minus Query: 159 ctacgcggtcaccgatgtctcgatcgcgacgcggtcggcgtagagga---cgtcctccgt 215 |||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||| Sbjct: 1010 ctacgcggtcaccgatgtctcgatggcgacgcggtcggagtagatgagcacgtcctccgc 951 Query: 216 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 950 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 891 Query: 276 cgcgtgatccgcgcccttcacccggtgtgacgtgccaaccagcaccgtgtggaggccaat 335 |||||| ||||||||||||||||| || | |||||| ||||||||||||||||| || || Sbjct: 890 cgcgtggtccgcgcccttcacccgctgcggcgtgcccaccagcaccgtgtggagcccgat 831 Query: 336 tcgcttgcctgcctgaatgttgcgcacgctgtcgtcgaagaaaatcgccttgtaagggtt 395 | ||| || ||||| ||||| | ||||||||||||||||||||||||||||| |||||| Sbjct: 830 cctcttccccgcctggatgttcctcacgctgtcgtcgaagaaaatcgccttgtgagggtt 771 Query: 396 cacgttggcgatcctgagcgccgcttccatggcgccgacgttgggcttgcataggacggg 455 |||||||||||||||||| ||| | ||||||||| |||||||||||||||| |||||||| Sbjct: 770 cacgttggcgatcctgagggcctcctccatggcgtcgacgttgggcttgcagaggacggg 711 Query: 456 ggtcctgggcaggtcgtcg 474 |||||||| || |||||| Sbjct: 710 tgtcctgggaagctcgtcg 692
>dbj|AK059223.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-024-D05, full insert sequence Length = 1314 Score = 391 bits (197), Expect = e-105 Identities = 289/319 (90%), Gaps = 3/319 (0%) Strand = Plus / Minus Query: 159 ctacgcggtcaccgatgtctcgatcgcgacgcggtcggcgtagagga---cgtcctccgt 215 |||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||| Sbjct: 1009 ctacgcggtcaccgatgtctcgatggcgacgcggtcggagtagatgagcacgtcctccgc 950 Query: 216 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 949 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 890 Query: 276 cgcgtgatccgcgcccttcacccggtgtgacgtgccaaccagcaccgtgtggaggccaat 335 |||||| ||||||||||||||||| || | |||||| ||||||||||||||||| || || Sbjct: 889 cgcgtggtccgcgcccttcacccgctgcggcgtgcccaccagcaccgtgtggagcccgat 830 Query: 336 tcgcttgcctgcctgaatgttgcgcacgctgtcgtcgaagaaaatcgccttgtaagggtt 395 | ||| || ||||| ||||| | ||||||||||||||||||||||||||||| |||||| Sbjct: 829 cctcttccccgcctggatgttcctcacgctgtcgtcgaagaaaatcgccttgtgagggtt 770 Query: 396 cacgttggcgatcctgagcgccgcttccatggcgccgacgttgggcttgcataggacggg 455 |||||||||||||||||| ||| | ||||||||| |||||||||||||||| |||||||| Sbjct: 769 cacgttggcgatcctgagggcctcctccatggcgtcgacgttgggcttgcagaggacggg 710 Query: 456 ggtcctgggcaggtcgtcg 474 |||||||| || |||||| Sbjct: 709 tgtcctgggaagctcgtcg 691
>gb|AY224492.1| Oryza sativa (japonica cultivar-group) isolate 30857 unknown mRNA Length = 492 Score = 383 bits (193), Expect = e-103 Identities = 279/307 (90%), Gaps = 3/307 (0%) Strand = Plus / Minus Query: 159 ctacgcggtcaccgatgtctcgatcgcgacgcggtcggcgtagagga---cgtcctccgt 215 |||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||| Sbjct: 307 ctacgcggtcaccgatgtctcgatggcgacgcggtcggagtagatgagcacgtcctccgc 248 Query: 216 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 188 Query: 276 cgcgtgatccgcgcccttcacccggtgtgacgtgccaaccagcaccgtgtggaggccaat 335 |||||| ||||||||||||||||| || | |||||| ||||||||||||||||| || || Sbjct: 187 cgcgtggtccgcgcccttcacccgctgcggcgtgcccaccagcaccgtgtggagcccgat 128 Query: 336 tcgcttgcctgcctgaatgttgcgcacgctgtcgtcgaagaaaatcgccttgtaagggtt 395 | ||| || ||||| ||||| | ||||||||||||||||||||||||||||| |||||| Sbjct: 127 cctcttccccgcctggatgttcctcacgctgtcgtcgaagaaaatcgccttgtgagggtt 68 Query: 396 cacgttggcgatcctgagcgccgcttccatggcgccgacgttgggcttgcataggacggg 455 |||||||||||||||||| ||| | ||||||||| |||||||||||||||| |||||||| Sbjct: 67 cacgttggcgatcctgagggcctcctccatggcgtcgacgttgggcttgcagaggacggg 8 Query: 456 ggtcctg 462 |||||| Sbjct: 7 tgtcctg 1
>dbj|AK067356.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013103J23, full insert sequence Length = 1315 Score = 375 bits (189), Expect = e-101 Identities = 284/315 (90%), Gaps = 3/315 (0%) Strand = Plus / Minus Query: 163 gcggtcaccgatgtctcgatcgcgacgcggtcggcgtagagga---cgtcctccgtcttc 219 |||||||||||||||||||| ||||||||||||| ||||| || ||||||||| |||| Sbjct: 1008 gcggtcaccgatgtctcgatggcgacgcggtcggagtagatgagcacgtcctccgccttc 949 Query: 220 tcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgcg 279 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 948 tcggactcctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgcg 889 Query: 280 tgatccgcgcccttcacccggtgtgacgtgccaaccagcaccgtgtggaggccaattcgc 339 || ||||||||||||||||| || | |||||| ||||||||||||||||| || || | | Sbjct: 888 tggtccgcgcccttcacccgctgcggcgtgcccaccagcaccgtgtggagcccgatcctc 829 Query: 340 ttgcctgcctgaatgttgcgcacgctgtcgtcgaagaaaatcgccttgtaagggttcacg 399 || || ||||| ||||| | ||||||||||||||||||||||||||||| |||||||||| Sbjct: 828 ttccccgcctggatgttcctcacgctgtcgtcgaagaaaatcgccttgtgagggttcacg 769 Query: 400 ttggcgatcctgagcgccgcttccatggcgccgacgttgggcttgcataggacgggggtc 459 |||||||||||||| ||| | ||||||||| |||||||||||||||| |||||||| ||| Sbjct: 768 ttggcgatcctgagggcctcctccatggcgtcgacgttgggcttgcagaggacgggtgtc 709 Query: 460 ctgggcaggtcgtcg 474 ||||| || |||||| Sbjct: 708 ctgggaagctcgtcg 694
>gb|AY106832.1| Zea mays PCO074808 mRNA sequence Length = 1378 Score = 355 bits (179), Expect = 8e-95 Identities = 281/315 (89%) Strand = Plus / Minus Query: 160 tacgcggtcaccgatgtctcgatcgcgacgcggtcggcgtagaggacgtcctccgtcttc 219 |||||||| ||||| ||||| ||||| ||||| |||| |||||| |||||||||| |||| Sbjct: 1007 tacgcggtgaccgaggtctccatcgcaacgcgttcggggtagagcacgtcctccgccttc 948 Query: 220 tcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgcg 279 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 947 tcggcctcctcccacagctccggcagcgcttccctgatgttgtggatgctctccagcgcg 888 Query: 280 tgatccgcgcccttcacccggtgtgacgtgccaaccagcaccgtgtggaggccaattcgc 339 || |||||||| |||||||| || || |||| ||||||||||||||||||||||| || Sbjct: 887 tggtccgcgcctttcacccgctgcgatttgcccaccagcaccgtgtggaggccaatctgc 828 Query: 340 ttgcctgcctgaatgttgcgcacgctgtcgtcgaagaaaatcgccttgtaagggttcacg 399 || || ||||| |||||||| ||||||||||||||||| |||||||||| ||||| ||| Sbjct: 827 ttcccggcctggatgttgcgtacgctgtcgtcgaagaagatcgccttgtgcgggttgacg 768 Query: 400 ttggcgatcctgagcgccgcttccatggcgccgacgttgggcttgcataggacgggggtc 459 |||||||||||||||||| | ||||||||| | ||||| |||||||| |||||||||||| Sbjct: 767 ttggcgatcctgagcgcctcctccatggcgtccacgttaggcttgcacaggacgggggtc 708 Query: 460 ctgggcaggtcgtcg 474 ||||||| |||||| Sbjct: 707 ttgggcagctcgtcg 693
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 278 bits (140), Expect = 2e-71 Identities = 205/226 (90%), Gaps = 3/226 (1%) Strand = Plus / Minus Query: 159 ctacgcggtcaccgatgtctcgatcgcgacgcggtcggcgtagagga---cgtcctccgt 215 |||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||| Sbjct: 9176623 ctacgcggtcaccgatgtctcgatggcgacgcggtcggagtagatgagcacgtcctccgc 9176564 Query: 216 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9176563 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 9176504 Query: 276 cgcgtgatccgcgcccttcacccggtgtgacgtgccaaccagcaccgtgtggaggccaat 335 |||||| ||||||||||||||||| || | |||||| ||||||||||||||||| || || Sbjct: 9176503 cgcgtggtccgcgcccttcacccgctgcggcgtgcccaccagcaccgtgtggagcccgat 9176444 Query: 336 tcgcttgcctgcctgaatgttgcgcacgctgtcgtcgaagaaaatc 381 | ||| || ||||| ||||| | |||||||||||||||||||||| Sbjct: 9176443 cctcttccccgcctggatgttcctcacgctgtcgtcgaagaaaatc 9176398 Score = 115 bits (58), Expect = 1e-22 Identities = 85/94 (90%) Strand = Plus / Minus Query: 381 cgccttgtaagggttcacgttggcgatcctgagcgccgcttccatggcgccgacgttggg 440 |||||||| |||||||||||||||||||||||| ||| | ||||||||| |||||||||| Sbjct: 9176296 cgccttgtgagggttcacgttggcgatcctgagggcctcctccatggcgtcgacgttggg 9176237 Query: 441 cttgcataggacgggggtcctgggcaggtcgtcg 474 |||||| |||||||| |||||||| || |||||| Sbjct: 9176236 cttgcagaggacgggtgtcctgggaagctcgtcg 9176203 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 gccagcggcggcggcggcgtc 159 ||||||||||||||||||||| Sbjct: 27545232 gccagcggcggcggcggcgtc 27545252 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 gcggcggcggcggcgtctacg 163 ||||||||||||||||||||| Sbjct: 20161595 gcggcggcggcggcgtctacg 20161615
>gb|AC107315.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0032O19, from chromosome 3, complete sequence Length = 142248 Score = 278 bits (140), Expect = 2e-71 Identities = 205/226 (90%), Gaps = 3/226 (1%) Strand = Plus / Plus Query: 159 ctacgcggtcaccgatgtctcgatcgcgacgcggtcggcgtagagga---cgtcctccgt 215 |||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||| Sbjct: 109768 ctacgcggtcaccgatgtctcgatggcgacgcggtcggagtagatgagcacgtcctccgc 109827 Query: 216 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 109828 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 109887 Query: 276 cgcgtgatccgcgcccttcacccggtgtgacgtgccaaccagcaccgtgtggaggccaat 335 |||||| ||||||||||||||||| || | |||||| ||||||||||||||||| || || Sbjct: 109888 cgcgtggtccgcgcccttcacccgctgcggcgtgcccaccagcaccgtgtggagcccgat 109947 Query: 336 tcgcttgcctgcctgaatgttgcgcacgctgtcgtcgaagaaaatc 381 | ||| || ||||| ||||| | |||||||||||||||||||||| Sbjct: 109948 cctcttccccgcctggatgttcctcacgctgtcgtcgaagaaaatc 109993 Score = 115 bits (58), Expect = 1e-22 Identities = 85/94 (90%) Strand = Plus / Plus Query: 381 cgccttgtaagggttcacgttggcgatcctgagcgccgcttccatggcgccgacgttggg 440 |||||||| |||||||||||||||||||||||| ||| | ||||||||| |||||||||| Sbjct: 110095 cgccttgtgagggttcacgttggcgatcctgagggcctcctccatggcgtcgacgttggg 110154 Query: 441 cttgcataggacgggggtcctgggcaggtcgtcg 474 |||||| |||||||| |||||||| || |||||| Sbjct: 110155 cttgcagaggacgggtgtcctgggaagctcgtcg 110188
>gb|AC134238.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0016G06, complete sequence Length = 119910 Score = 278 bits (140), Expect = 2e-71 Identities = 205/226 (90%), Gaps = 3/226 (1%) Strand = Plus / Minus Query: 159 ctacgcggtcaccgatgtctcgatcgcgacgcggtcggcgtagagga---cgtcctccgt 215 |||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||| Sbjct: 119803 ctacgcggtcaccgatgtctcgatggcgacgcggtcggagtagatgagcacgtcctccgc 119744 Query: 216 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 119743 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 119684 Query: 276 cgcgtgatccgcgcccttcacccggtgtgacgtgccaaccagcaccgtgtggaggccaat 335 |||||| ||||||||||||||||| || | |||||| ||||||||||||||||| || || Sbjct: 119683 cgcgtggtccgcgcccttcacccgctgcggcgtgcccaccagcaccgtgtggagcccgat 119624 Query: 336 tcgcttgcctgcctgaatgttgcgcacgctgtcgtcgaagaaaatc 381 | ||| || ||||| ||||| | |||||||||||||||||||||| Sbjct: 119623 cctcttccccgcctggatgttcctcacgctgtcgtcgaagaaaatc 119578 Score = 115 bits (58), Expect = 1e-22 Identities = 85/94 (90%) Strand = Plus / Minus Query: 381 cgccttgtaagggttcacgttggcgatcctgagcgccgcttccatggcgccgacgttggg 440 |||||||| |||||||||||||||||||||||| ||| | ||||||||| |||||||||| Sbjct: 119476 cgccttgtgagggttcacgttggcgatcctgagggcctcctccatggcgtcgacgttggg 119417 Query: 441 cttgcataggacgggggtcctgggcaggtcgtcg 474 |||||| |||||||| |||||||| || |||||| Sbjct: 119416 cttgcagaggacgggtgtcctgggaagctcgtcg 119383
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 278 bits (140), Expect = 2e-71 Identities = 205/226 (90%), Gaps = 3/226 (1%) Strand = Plus / Minus Query: 159 ctacgcggtcaccgatgtctcgatcgcgacgcggtcggcgtagagga---cgtcctccgt 215 |||||||||||||||||||||||| ||||||||||||| ||||| || ||||||||| Sbjct: 9174456 ctacgcggtcaccgatgtctcgatggcgacgcggtcggagtagatgagcacgtcctccgc 9174397 Query: 216 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 275 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 9174396 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctccag 9174337 Query: 276 cgcgtgatccgcgcccttcacccggtgtgacgtgccaaccagcaccgtgtggaggccaat 335 |||||| ||||||||||||||||| || | |||||| ||||||||||||||||| || || Sbjct: 9174336 cgcgtggtccgcgcccttcacccgctgcggcgtgcccaccagcaccgtgtggagcccgat 9174277 Query: 336 tcgcttgcctgcctgaatgttgcgcacgctgtcgtcgaagaaaatc 381 | ||| || ||||| ||||| | |||||||||||||||||||||| Sbjct: 9174276 cctcttccccgcctggatgttcctcacgctgtcgtcgaagaaaatc 9174231 Score = 115 bits (58), Expect = 1e-22 Identities = 85/94 (90%) Strand = Plus / Minus Query: 381 cgccttgtaagggttcacgttggcgatcctgagcgccgcttccatggcgccgacgttggg 440 |||||||| |||||||||||||||||||||||| ||| | ||||||||| |||||||||| Sbjct: 9174129 cgccttgtgagggttcacgttggcgatcctgagggcctcctccatggcgtcgacgttggg 9174070 Query: 441 cttgcataggacgggggtcctgggcaggtcgtcg 474 |||||| |||||||| |||||||| || |||||| Sbjct: 9174069 cttgcagaggacgggtgtcctgggaagctcgtcg 9174036 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 gccagcggcggcggcggcgtc 159 ||||||||||||||||||||| Sbjct: 27636555 gccagcggcggcggcggcgtc 27636575 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 gcggcggcggcggcgtctacg 163 ||||||||||||||||||||| Sbjct: 20154622 gcggcggcggcggcgtctacg 20154642
>ref|NM_193122.1| Oryza sativa (japonica cultivar-group), mRNA Length = 834 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 227 cctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgc 278 |||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 748 cctcccacagctccggcaccgcctccttgatgttgtggatgctctccagcgc 697
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Plus Query: 227 cctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgc 278 |||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 26274150 cctcccacagctccggcaccgcctccttgatgttgtggatgctctccagcgc 26274201 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 8021078 gagccagcggcggcggcggcg 8021058 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 1247981 gagccagcggcggcggcggcg 1247961 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 agccagcggcggcggcggcg 157 |||||||||||||||||||| Sbjct: 25315191 agccagcggcggcggcggcg 25315172
>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0455H11 Length = 101607 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Plus Query: 227 cctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgc 278 |||||||||||||||||| ||||||| ||||||||||||||||||||||||| Sbjct: 48778 cctcccacagctccggcaccgcctccttgatgttgtggatgctctccagcgc 48829
>gb|AY104976.1| Zea mays PCO136133 mRNA sequence Length = 712 Score = 87.7 bits (44), Expect = 3e-14 Identities = 50/52 (96%) Strand = Plus / Minus Query: 227 cctcccacagctccggcagcgcctccctgatgttgtggatgctctccagcgc 278 ||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct: 373 cctcccagagctccggcagcgcctccttgatgttgtggatgctctccagcgc 322
>gb|AY105377.1| Zea mays PCO061803 mRNA sequence Length = 679 Score = 54.0 bits (27), Expect = 4e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 216 cttctcggcctcctcccacagctccggcagcgcctccctgatgttgtggatgctctcca 274 |||||| || |||||||||||||||||||| || ||| | |||||||||| ||| |||| Sbjct: 489 cttctcagcttcctcccacagctccggcagtgcttccttcatgttgtggaggctttcca 431
>gb|DQ481665.1| Takifugu rubripes HoxBa gene cluster, complete sequence Length = 294716 Score = 50.1 bits (25), Expect = 0.007 Identities = 25/25 (100%) Strand = Plus / Minus Query: 133 ccgggagccagcggcggcggcggcg 157 ||||||||||||||||||||||||| Sbjct: 238581 ccgggagccagcggcggcggcggcg 238557
>ref|NM_184156.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1394 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 143 gcggcggcggcggcgtctacgcg 165 ||||||||||||||||||||||| Sbjct: 460 gcggcggcggcggcgtctacgcg 482
>gb|AY023190.1| Oryza sativa microsatellite MRG5515 containing (GCG)X8, genomic sequence Length = 224 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 143 gcggcggcggcggcgtctacgcg 165 ||||||||||||||||||||||| Sbjct: 110 gcggcggcggcggcgtctacgcg 132
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 129 tgcaccgggagccagcggcggcggcggcgtc 159 ||||||||||| | ||||||||||||||||| Sbjct: 2761071 tgcaccgggaggcggcggcggcggcggcgtc 2761101 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 agccagcggcggcggcggcg 157 |||||||||||||||||||| Sbjct: 623461 agccagcggcggcggcggcg 623442
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 143 gcggcggcggcggcgtctacgcg 165 ||||||||||||||||||||||| Sbjct: 1253701 gcggcggcggcggcgtctacgcg 1253723 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 ggagccagcggcggcggcggcgtc 159 |||||| ||||||||||||||||| Sbjct: 11786284 ggagcctgcggcggcggcggcgtc 11786307
>dbj|AP003046.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0445D12 Length = 140952 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 143 gcggcggcggcggcgtctacgcg 165 ||||||||||||||||||||||| Sbjct: 47355 gcggcggcggcggcgtctacgcg 47377
>dbj|AP005412.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0050G13 Length = 150685 Score = 46.1 bits (23), Expect = 0.10 Identities = 29/31 (93%) Strand = Plus / Plus Query: 129 tgcaccgggagccagcggcggcggcggcgtc 159 ||||||||||| | ||||||||||||||||| Sbjct: 29299 tgcaccgggaggcggcggcggcggcggcgtc 29329
>dbj|AK107171.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-G03, full insert sequence Length = 1394 Score = 46.1 bits (23), Expect = 0.10 Identities = 23/23 (100%) Strand = Plus / Plus Query: 143 gcggcggcggcggcgtctacgcg 165 ||||||||||||||||||||||| Sbjct: 460 gcggcggcggcggcgtctacgcg 482
>emb|CR925723.7| Zebrafish DNA sequence from clone RP71-81E14, complete sequence Length = 157989 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 tcctcgtgctggatactgtttt 29 |||||||||||||||||||||| Sbjct: 143312 tcctcgtgctggatactgtttt 143291
>emb|CR925757.8| Zebrafish DNA sequence from clone CH211-208H16 in linkage group 5, complete sequence Length = 154617 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 8 tcctcgtgctggatactgtttt 29 |||||||||||||||||||||| Sbjct: 50546 tcctcgtgctggatactgtttt 50525
>emb|AJ237988.1|VVI237988 Vitis vinifera mRNA for putative ripening-related protein (grip21 gene) Length = 1190 Score = 44.1 bits (22), Expect = 0.41 Identities = 40/46 (86%) Strand = Plus / Minus Query: 227 cctcccacagctccggcagcgcctccctgatgttgtggatgctctc 272 ||||||||||||| || | || ||||| ||||||||||||||||| Sbjct: 947 cctcccacagctctggtaatgcttccctcatgttgtggatgctctc 902
>ref|XM_469361.1| Oryza sativa (japonica cultivar-group), mRNA Length = 774 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 139 gccagcggcggcggcggcgtc 159 ||||||||||||||||||||| Sbjct: 214 gccagcggcggcggcggcgtc 234
>ref|NM_186821.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1575 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 178 gagccagcggcggcggcggcg 198
>ref|XM_476445.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1131 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 45 gagccagcggcggcggcggcg 25
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0037H06, complete sequence Length = 144457 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 5907 gagccagcggcggcggcggcg 5927
>gb|AC016781.6| Oryza sativa (japonica cultivar-group) clone OSJNBa0084C09, complete sequence Length = 151269 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 143 gcggcggcggcggcgtctacg 163 ||||||||||||||||||||| Sbjct: 79679 gcggcggcggcggcgtctacg 79699
>gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0680F01, complete sequence Length = 156691 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 81888 gagccagcggcggcggcggcg 81908
>ref|XM_359584.1| Magnaporthe grisea 70-15 hypothetical protein (MG05193.4) partial mRNA Length = 2463 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 127 ggtgcaccgggagccagcggcggcg 151 |||||||||| |||||||||||||| Sbjct: 2395 ggtgcaccggcagccagcggcggcg 2419
>ref|XM_322305.1| Neurospora crassa OR74A hypothetical protein (NCU00220.1) partial mRNA Length = 762 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 143 gagccagcggcggcggcggcg 163
>ref|XM_951512.1| Neurospora crassa OR74A hypothetical protein (NCU00220.1) partial mRNA Length = 762 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 143 gagccagcggcggcggcggcg 163
>ref|NM_183006.1| Homo sapiens discs, large (Drosophila) homolog-associated protein 4 (DLGAP4), transcript variant 2, mRNA Length = 3794 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 126 aggtgcaccgggagccagcggcggcggcg 154 |||||| ||| |||||||||||||||||| Sbjct: 3195 aggtgccccgagagccagcggcggcggcg 3167
>ref|NM_014902.2| Homo sapiens discs, large (Drosophila) homolog-associated protein 4 (DLGAP4), transcript variant 1, mRNA Length = 5007 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 126 aggtgcaccgggagccagcggcggcggcg 154 |||||| ||| |||||||||||||||||| Sbjct: 4408 aggtgccccgagagccagcggcggcggcg 4380
>gb|AC137998.2| Oryza sativa chromosome 3 BAC OSJNBa0010B01 genomic sequence, complete sequence Length = 27470 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 gccagcggcggcggcggcgtc 159 ||||||||||||||||||||| Sbjct: 17542 gccagcggcggcggcggcgtc 17522
>ref|NM_145296.1| Homo sapiens immunoglobulin superfamily, member 4C (IGSF4C), mRNA Length = 2176 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 133 ccgggagccagcggcggcggcggcg 157 |||||||| |||||||||||||||| Sbjct: 14 ccgggagcgagcggcggcggcggcg 38
>emb|AL050318.13|HSDJ977B1 Human DNA sequence from clone RP5-977B1 on chromosome 20 Contains the 3' end of the SLA2 gene for Src-like-adaptor 2, the HNRPA3P gene for heterogeneous nuclear ribonucleoprotein A3 pseudogene, the C20orf24 gene for chromosome 24 open reading frame 24 (putative RAB5-interacting protein), the TGIF2 gene for TGF(beta)-induced transcription factor 2, the MYRL2 gene for myosin regulatory light chain 2 (smooth muscle variant), the 3' end of a novel gene (KIAA0964), a novel gene, and three CpG islands, complete sequence Length = 145068 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 126 aggtgcaccgggagccagcggcggcggcg 154 |||||| ||| |||||||||||||||||| Sbjct: 38752 aggtgccccgagagccagcggcggcggcg 38724
>gb|CP000088.1| Thermobifida fusca YX, complete genome Length = 3642249 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 207 gtcctccgtcttctcggcctc 227 ||||||||||||||||||||| Sbjct: 2931935 gtcctccgtcttctcggcctc 2931955
>emb|CR859652.1| Pongo pygmaeus mRNA; cDNA DKFZp459M159 (from clone DKFZp459M159) Length = 2107 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 126 aggtgcaccgggagccagcggcggcggcg 154 |||||| ||| |||||||||||||||||| Sbjct: 1497 aggtgccccgagagccagcggcggcggcg 1469
>emb|CR610787.1| full-length cDNA clone CS0DC002YA02 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1095 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 126 aggtgcaccgggagccagcggcggcggcg 154 |||||| ||| |||||||||||||||||| Sbjct: 509 aggtgccccgagagccagcggcggcggcg 481
>dbj|AK001681.1| Homo sapiens cDNA FLJ10819 fis, clone NT2RP4001010, highly similar to Homo sapiens mRNA for KIAA0964 protein Length = 2978 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 126 aggtgcaccgggagccagcggcggcggcg 154 |||||| ||| |||||||||||||||||| Sbjct: 2377 aggtgccccgagagccagcggcggcggcg 2349
>gb|AC005525.2|AC005525 Homo sapiens chromosome 19, cosmid F22162 (LLNLF-179G2), complete sequence Length = 36991 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 133 ccgggagccagcggcggcggcggcg 157 |||||||| |||||||||||||||| Sbjct: 28444 ccgggagcgagcggcggcggcggcg 28420
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 8673465 gagccagcggcggcggcggcg 8673485 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agcggcggcggcggcgtcta 161 |||||||||||||||||||| Sbjct: 23101688 agcggcggcggcggcgtcta 23101707
>gb|AC068726.5|AC068726 Homo sapiens chromosome 15 clone RP11-844G16 map 15q21.3, complete sequence Length = 189308 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 133 ccgggagccagcggcggcggcggcg 157 |||||||| |||||||||||||||| Sbjct: 51770 ccgggagcgagcggcggcggcggcg 51746
>gb|AC120508.3| Oryza sativa chromosome 3 BAC OSJNBb0021O11 genomic sequence, complete sequence Length = 123406 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 139 gccagcggcggcggcggcgtc 159 ||||||||||||||||||||| Sbjct: 5282 gccagcggcggcggcggcgtc 5262
>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0474G09 Length = 169511 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 12816 gagccagcggcggcggcggcg 12796
>dbj|AP003754.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1341_A08 Length = 128955 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 59275 gagccagcggcggcggcggcg 59255
>dbj|AP005165.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0057M23 Length = 168029 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 149588 gagccagcggcggcggcggcg 149568
>dbj|AB023181.1| Homo sapiens mRNA for KIAA0964 protein, partial cds Length = 5007 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 126 aggtgcaccgggagccagcggcggcggcg 154 |||||| ||| |||||||||||||||||| Sbjct: 4408 aggtgccccgagagccagcggcggcggcg 4380
>dbj|AP004382.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0418E08 Length = 141040 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 137437 gagccagcggcggcggcggcg 137417
>dbj|AK121036.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023050O10, full insert sequence Length = 2132 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 238 gagccagcggcggcggcggcg 258
>emb|AJ323081.1|HSA323081 Homo sapiens genomic sequence surrounding NotI site, clone NB6-133R Length = 524 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 133 ccgggagccagcggcggcggcggcg 157 |||||||| |||||||||||||||| Sbjct: 22 ccgggagcgagcggcggcggcggcg 46
>dbj|AP003702.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1007_H09 Length = 42137 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 137 gagccagcggcggcggcggcg 157 ||||||||||||||||||||| Sbjct: 17558 gagccagcggcggcggcggcg 17538
>gb|AF088030.1|HUMZC22B11 Homo sapiens full length insert cDNA clone ZC22B11 Length = 719 Score = 42.1 bits (21), Expect = 1.6 Identities = 27/29 (93%) Strand = Plus / Minus Query: 126 aggtgcaccgggagccagcggcggcggcg 154 |||||| ||| |||||||||||||||||| Sbjct: 616 aggtgccccgagagccagcggcggcggcg 588
>gb|AF363368.1| Homo sapiens TSLC1-like 2 (TSLL2) mRNA, complete cds Length = 2176 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 133 ccgggagccagcggcggcggcggcg 157 |||||||| |||||||||||||||| Sbjct: 14 ccgggagcgagcggcggcggcggcg 38
>ref|XM_479921.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1149 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 gccagcggcggcggcggcgt 158 |||||||||||||||||||| Sbjct: 243 gccagcggcggcggcggcgt 224
>ref|XM_472419.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 951 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ggagccagcggcggcggcggcgtc 159 |||||| ||||||||||||||||| Sbjct: 252 ggagccggcggcggcggcggcgtc 229
>ref|NM_183718.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1593 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ggagccagcggcggcggcggcgtc 159 |||||| ||||||||||||||||| Sbjct: 293 ggagcctgcggcggcggcggcgtc 270
>ref|XM_479162.1| Oryza sativa (japonica cultivar-group), mRNA Length = 351 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 agccagcggcggcggcggcg 157 |||||||||||||||||||| Sbjct: 60 agccagcggcggcggcggcg 41
>gb|AC135924.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0486C01, complete sequence Length = 146432 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agcggcggcggcggcgtcta 161 |||||||||||||||||||| Sbjct: 33463 agcggcggcggcggcgtcta 33482
>gb|AC109832.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone P0038B07, complete sequence Length = 149697 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 agccagcggcggcggcggcg 157 |||||||||||||||||||| Sbjct: 119643 agccagcggcggcggcggcg 119624
>gb|AC133609.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0002C14, complete sequence Length = 154029 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 cgggagccagcggcggcggcggcg 157 |||||||| ||||||||||||||| Sbjct: 22368 cgggagccggcggcggcggcggcg 22345
>ref|XM_364831.1| Magnaporthe grisea 70-15 hypothetical protein (MG09676.4) partial mRNA Length = 2313 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 143 gcggcggcggcggcgtctac 162 |||||||||||||||||||| Sbjct: 1037 gcggcggcggcggcgtctac 1056
>ref|XM_958919.1| Neurospora crassa OR74A hypothetical protein (NCU02056.1) partial mRNA Length = 1431 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 cgttggcgatcctgagcgcc 417 |||||||||||||||||||| Sbjct: 1204 cgttggcgatcctgagcgcc 1185
>ref|XM_958921.1| Neurospora crassa OR74A hypothetical protein (NCU02058.1) partial mRNA Length = 1740 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 agccagcggcggcggcggcg 157 |||||||||||||||||||| Sbjct: 1155 agccagcggcggcggcggcg 1136
>ref|XM_329245.1| Neurospora crassa OR74A hypothetical protein (NCU02056.1) partial mRNA Length = 1431 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 398 cgttggcgatcctgagcgcc 417 |||||||||||||||||||| Sbjct: 1204 cgttggcgatcctgagcgcc 1185
>ref|XM_329247.1| Neurospora crassa OR74A hypothetical protein (NCU02058.1) partial mRNA Length = 1740 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 agccagcggcggcggcggcg 157 |||||||||||||||||||| Sbjct: 1155 agccagcggcggcggcggcg 1136
>gb|AC161276.2| Pan troglodytes BAC clone CH251-520C21 from chromosome 7, complete sequence Length = 210088 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 227 cctcccacagctccggcagc 246 |||||||||||||||||||| Sbjct: 59374 cctcccacagctccggcagc 59393
>gb|AC102771.13| Mus musculus chromosome 1, clone RP23-175K23, complete sequence Length = 226416 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 gctggatactgttttttccc 34 |||||||||||||||||||| Sbjct: 63083 gctggatactgttttttccc 63102
>gb|AC002127.1| Homo sapiens BAC clone CTA-305H12 from 7, complete sequence Length = 144165 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 227 cctcccacagctccggcagc 246 |||||||||||||||||||| Sbjct: 39435 cctcccacagctccggcagc 39416
>emb|AL953897.6| Human DNA sequence from clone RP11-56N19 on chromosome 1 Contains the 3' end of a novel gene, the AGTRAP gene for angiotensin II receptor-associated protein, two novel genes, the MTHFR gene for 5,10-methylenetetrahydrofolate reductase (NADPH), the 5' end of the CLCN6 gene for chloride channel 6 and a CpG island, complete sequence Length = 102509 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 cgggagccagcggcggcggc 153 |||||||||||||||||||| Sbjct: 54156 cgggagccagcggcggcggc 54175
>emb|AL049637.43|HSJ850O15 Human DNA sequence from clone RP5-850O15 on chromosome 1p32.3-34.2 Contains the DMRTA2 gene for DMRT-like family A2, the 3' end of the FAF1 gene for Fas (TNFRSF6) associated factor 1, a novel gene and three CpG islands, complete sequence Length = 111799 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 gcggcggcggcggcgtctacgcgg 166 ||||||||||||||||| |||||| Sbjct: 103083 gcggcggcggcggcgtcgacgcgg 103060
>emb|Y14271.1|GGY14271 Gallus gallus mRNA for Eph-like receptor tyrosine kinase Length = 3943 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agcggcggcggcggcgtcta 161 |||||||||||||||||||| Sbjct: 156 agcggcggcggcggcgtcta 175
>emb|AL606453.2|OSJN00010 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991214_12, complete sequence Length = 116952 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ggagccagcggcggcggcggcgtc 159 |||||| ||||||||||||||||| Sbjct: 39136 ggagccggcggcggcggcggcgtc 39113
>emb|AJ301580.1|HSA301580 Homo sapiens partial mRNA for doublesex-mab-3 (DM) domain (DMRTA2 gene) Length = 1692 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 gcggcggcggcggcgtctacgcgg 166 ||||||||||||||||| |||||| Sbjct: 1012 gcggcggcggcggcgtcgacgcgg 989
>ref|NM_205083.1| Gallus gallus EPH receptor A7 (EPHA7), mRNA Length = 3943 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 agcggcggcggcggcgtcta 161 |||||||||||||||||||| Sbjct: 156 agcggcggcggcggcgtcta 175
>emb|AL833920.1|HSM805231 Homo sapiens mRNA; cDNA DKFZp434E1410 (from clone DKFZp434E1410) Length = 2565 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 cgggagccagcggcggcggc 153 |||||||||||||||||||| Sbjct: 444 cgggagccagcggcggcggc 463
>gb|AC099789.2| Homo sapiens chromosome 1 clone RP11-377K22, complete sequence Length = 174162 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 gcggcggcggcggcgtctacgcgg 166 ||||||||||||||| |||||||| Sbjct: 93920 gcggcggcggcggcggctacgcgg 93943
>ref|XM_941606.1| PREDICTED: Homo sapiens DMRT-like family A2 (DMRTA2), mRNA Length = 2737 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 gcggcggcggcggcgtctacgcgg 166 ||||||||||||||||| |||||| Sbjct: 1178 gcggcggcggcggcgtcgacgcgg 1155
>ref|XM_938203.1| PREDICTED: Homo sapiens chromosome 1 open reading frame 167 (C1orf167), mRNA Length = 5317 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 cgggagccagcggcggcggc 153 |||||||||||||||||||| Sbjct: 1390 cgggagccagcggcggcggc 1409
>ref|XM_027162.5| PREDICTED: Homo sapiens DMRT-like family A2 (DMRTA2), mRNA Length = 2738 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 143 gcggcggcggcggcgtctacgcgg 166 ||||||||||||||||| |||||| Sbjct: 1179 gcggcggcggcggcgtcgacgcgg 1156
>ref|XM_209234.5| PREDICTED: Homo sapiens chromosome 1 open reading frame 167 (C1orf167), mRNA Length = 5317 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 134 cgggagccagcggcggcggc 153 |||||||||||||||||||| Sbjct: 1390 cgggagccagcggcggcggc 1409
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gccagcggcggcggcggcgt 158 |||||||||||||||||||| Sbjct: 30360868 gccagcggcggcggcggcgt 30360887 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ggagccagcggcggcggcggcgtc 159 |||||| ||||||||||||||||| Sbjct: 20528508 ggagccggcggcggcggcggcgtc 20528485
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 cgggagccagcggcggcggcggcg 157 |||||||| ||||||||||||||| Sbjct: 26114042 cgggagccggcggcggcggcggcg 26114019 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 agccagcggcggcggcggcg 157 |||||||||||||||||||| Sbjct: 23783605 agccagcggcggcggcggcg 23783586
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 gccagcggcggcggcggcgt 158 |||||||||||||||||||| Sbjct: 1640235 gccagcggcggcggcggcgt 1640216
>gb|AF243043.1|AF243043 Zea mays DNA cytosine methyltransferase MET2a (met2a) mRNA, complete cds Length = 2796 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 gccagcggcggcggcggcgt 158 |||||||||||||||||||| Sbjct: 423 gccagcggcggcggcggcgt 404
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 6.4 Identities = 26/28 (92%) Strand = Plus / Plus Query: 139 gccagcggcggcggcggcgtctacgcgg 166 |||||||||||||||| |||| |||||| Sbjct: 1190086 gccagcggcggcggcgccgtcgacgcgg 1190113
>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0501G04 Length = 156603 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 agccagcggcggcggcggcg 157 |||||||||||||||||||| Sbjct: 101514 agccagcggcggcggcggcg 101495
>dbj|AP003722.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1011A07 Length = 150590 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 136 ggagccagcggcggcggcggcgtc 159 |||||| ||||||||||||||||| Sbjct: 125452 ggagcctgcggcggcggcggcgtc 125475
>dbj|AP005198.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0616D06 Length = 153800 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 agccagcggcggcggcggcg 157 |||||||||||||||||||| Sbjct: 131862 agccagcggcggcggcggcg 131843
>dbj|AP004988.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1056G08 Length = 168173 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 agccagcggcggcggcggcg 157 |||||||||||||||||||| Sbjct: 8281 agccagcggcggcggcggcg 8262
>dbj|AP004591.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0582D05 Length = 150483 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 139 gccagcggcggcggcggcgt 158 |||||||||||||||||||| Sbjct: 39735 gccagcggcggcggcggcgt 39716
>dbj|AK107530.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-G09, full insert sequence Length = 1204 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ggagccagcggcggcggcggcgtc 159 |||||| ||||||||||||||||| Sbjct: 298 ggagccggcggcggcggcggcgtc 275
>dbj|AK102427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093F20, full insert sequence Length = 1884 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 ggagccagcggcggcggcggcgtc 159 |||||| ||||||||||||||||| Sbjct: 412 ggagcctgcggcggcggcggcgtc 389
>emb|AL646053.1| Ralstonia solanacearum GMI1000 megaplasmid complete sequence Length = 2094509 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 133 ccgggagccagcggcggcgg 152 |||||||||||||||||||| Sbjct: 1821091 ccgggagccagcggcggcgg 1821072
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 cgggagccagcggcggcggcggcg 157 |||||||| ||||||||||||||| Sbjct: 26432738 cgggagccggcggcggcggcggcg 26432715 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 138 agccagcggcggcggcggcg 157 |||||||||||||||||||| Sbjct: 24095274 agccagcggcggcggcggcg 24095255
>emb|AL606683.3|OSJN00089 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0083N12, complete sequence Length = 160989 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 139 gccagcggcggcggcggcgt 158 |||||||||||||||||||| Sbjct: 110764 gccagcggcggcggcggcgt 110783 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,297,784 Number of Sequences: 3902068 Number of extensions: 3297784 Number of successful extensions: 236309 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 110 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 225520 Number of HSP's gapped (non-prelim): 10737 length of query: 475 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 453 effective length of database: 17,147,199,772 effective search space: 7767681496716 effective search space used: 7767681496716 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)