ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33p06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RBS3_WHEAT (P07398) Ribulose bisphosphate carboxylase small chai... 33 0.26
2RBS2_WHEAT (P26667) Ribulose bisphosphate carboxylase small chai... 32 0.57
3RBS_HORVU (Q40004) Ribulose bisphosphate carboxylase small chain... 32 0.57
4RBS1_WHEAT (P00871) Ribulose bisphosphate carboxylase small chai... 32 0.57
5RBS_AEGTA (Q38793) Ribulose bisphosphate carboxylase small chain... 30 2.2
6ENGC_PROMA (Q7VEJ4) Probable GTPase engC (EC 3.6.1.-) 28 4.8
7KRA43_HUMAN (Q9BYR4) Keratin-associated protein 4-3 (Keratin-ass... 28 6.3
8RBS3_ORYSA (P18567) Ribulose bisphosphate carboxylase small chai... 28 6.3
9RBS2_ORYSA (P18566) Ribulose bisphosphate carboxylase small chai... 28 6.3

>RBS3_WHEAT (P07398) Ribulose bisphosphate carboxylase small chain clone 512|
           (EC 4.1.1.39) (RuBisCO small subunit) (Fragment)
          Length = 113

 Score = 32.7 bits (73), Expect = 0.26
 Identities = 13/13 (100%), Positives = 13/13 (100%)
 Frame = -3

Query: 238 AFKPPGCEESGKA 200
           AFKPPGCEESGKA
Sbjct: 101 AFKPPGCEESGKA 113



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>RBS2_WHEAT (P26667) Ribulose bisphosphate carboxylase small chain PW9,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit PW9)
          Length = 175

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = -3

Query: 238 AFKPPGCEESGKA 200
           AF+PPGCEESGKA
Sbjct: 163 AFRPPGCEESGKA 175



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>RBS_HORVU (Q40004) Ribulose bisphosphate carboxylase small chain, chloroplast|
           precursor (EC 4.1.1.39) (RuBisCO small subunit)
          Length = 174

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = -3

Query: 238 AFKPPGCEESGKA 200
           AFKPPGC+ESGKA
Sbjct: 162 AFKPPGCQESGKA 174



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>RBS1_WHEAT (P00871) Ribulose bisphosphate carboxylase small chain PWS4.3,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit PWS4.3)
          Length = 174

 Score = 31.6 bits (70), Expect = 0.57
 Identities = 12/13 (92%), Positives = 13/13 (100%)
 Frame = -3

Query: 238 AFKPPGCEESGKA 200
           AF+PPGCEESGKA
Sbjct: 162 AFRPPGCEESGKA 174



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>RBS_AEGTA (Q38793) Ribulose bisphosphate carboxylase small chain, chloroplast|
           precursor (EC 4.1.1.39) (RuBisCO small subunit)
          Length = 175

 Score = 29.6 bits (65), Expect = 2.2
 Identities = 12/13 (92%), Positives = 12/13 (92%)
 Frame = -3

Query: 238 AFKPPGCEESGKA 200
           A KPPGCEESGKA
Sbjct: 163 ASKPPGCEESGKA 175



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>ENGC_PROMA (Q7VEJ4) Probable GTPase engC (EC 3.6.1.-)|
          Length = 309

 Score = 28.5 bits (62), Expect = 4.8
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +2

Query: 77  TYTYS*EQIRKINGEGKPKAMSELTKLQWHFICGPSXV 190
           T+ Y    I  +NGEG  K  + L  ++   +CGPS V
Sbjct: 156 TWGYQPIPISIVNGEGIQKLSARLKSMKLGVLCGPSGV 193



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>KRA43_HUMAN (Q9BYR4) Keratin-associated protein 4-3 (Keratin-associated protein|
           4.3) (Ultrahigh sulfur keratin-associated protein 4.3)
           (Fragment)
          Length = 98

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 85  CVCPCSCTTHGSKKTCLYVKCC 20
           C CP SC T   + TC +  CC
Sbjct: 72  CRCPFSCPTTCCRTTCFHPICC 93



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>RBS3_ORYSA (P18567) Ribulose bisphosphate carboxylase small chain C,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit C)
          Length = 175

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 238 AFKPPGCEESG 206
           A+KPPGCEESG
Sbjct: 163 AYKPPGCEESG 173



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>RBS2_ORYSA (P18566) Ribulose bisphosphate carboxylase small chain A,|
           chloroplast precursor (EC 4.1.1.39) (RuBisCO small
           subunit A)
          Length = 175

 Score = 28.1 bits (61), Expect = 6.3
 Identities = 10/11 (90%), Positives = 11/11 (100%)
 Frame = -3

Query: 238 AFKPPGCEESG 206
           A+KPPGCEESG
Sbjct: 163 AYKPPGCEESG 173


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,904,000
Number of Sequences: 219361
Number of extensions: 582756
Number of successful extensions: 1658
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1654
length of database: 80,573,946
effective HSP length: 55
effective length of database: 68,509,091
effective search space used: 1644218184
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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