ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33p06
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical pr... 323 1e-85
2emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precur... 315 3e-83
3gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisp... 315 3e-83
4emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precur... 295 3e-77
5emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosp... 285 3e-74
6gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate c... 167 2e-38
7dbj|AB042066.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 72 9e-10
8dbj|AB042064.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 72 9e-10
9emb|AJ131737.1|SCE131737 Secale cereale mRNA for hypothetical pr... 64 2e-07
10dbj|AB042067.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 64 2e-07
11gb|AF202646.1|AF202646 Avena clauda clone ClG4 ribulose-1,5-bisp... 60 3e-06
12gb|M37477.1|WHTRUBIAB T.aestivum ribulose-1,5-bisphosphate carbo... 60 3e-06
13gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carbo... 60 3e-06
14gb|AF202645.1|AF202645 Avena clauda clone ClG2 ribulose-1,5-bisp... 56 5e-05
15gb|AF200303.1|AF200303 Avena clauda ribulose-1,5-bisphosphate ca... 56 5e-05
16gb|AF192773.1|AF192773 Avena agadiriana ribulose-1,5-bisphosphat... 56 5e-05
17gb|AF097359.1|AF097359 Avena agadiriana ribulose-1,5-bisphosphat... 56 5e-05
18emb|AJ635206.1| Triticum durum ssp. durum partial mRNA for putat... 56 5e-05
19dbj|AB020945.1| Avena sativa DNA for ribulose-1,5-bisphosphate c... 56 5e-05
20gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, comp... 52 8e-04
21gb|AF202647.1|AF202647 Avena agadiriana ribulose-1,5-bisphosphat... 52 8e-04
22dbj|AB042068.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 52 8e-04
23gb|AF192780.1|AF192780 Avena maroccana clone Ma7 ribulose-1,5-bi... 48 0.013
24gb|AF192778.1|AF192778 Avena sterilis subsp. ludoviciana ribulos... 48 0.013
25gb|AF192777.1|AF192777 Avena clauda clone Cl9 ribulose-1,5-bisph... 48 0.013
26gb|AF192776.1|AF192776 Avena clauda clone Cl5 ribulose-1,5-bisph... 48 0.013
27gb|AF192775.1|AF192775 Avena strigosa clone Str5 ribulose-1,5-bi... 48 0.013
28gb|AF192774.1|AF192774 Avena strigosa clone Str3 ribulose-1,5-bi... 48 0.013
29gb|AF097361.1|AF097361 Avena clauda ribulose-1,5-bisphosphate ca... 48 0.013
30gb|AF097360.1|AF097360 Avena strigosa ribulose-1,5-bisphosphate ... 48 0.013
31gb|AF104250.1|AF104250 Avena maroccana ribulose-1,5-bisphosphate... 48 0.013
32gb|AF104249.1|AF104249 Avena vaviloviana ribulose-1,5-bisphospha... 48 0.013
33gb|AF096617.1|AF096617 Avena sterilis subsp. ludoviciana ribulos... 48 0.013
34dbj|AB042065.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 48 0.013
35emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 i... 46 0.050
36ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family,... 44 0.20
37gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.20
38gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, p... 44 0.20
39dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN f... 44 0.20
40dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN fu... 44 0.20
41dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 44 0.20
42dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIK... 44 0.20
43gb|AF202648.1|AF202648 Avena maroccana ribulose-1,5-bisphosphate... 44 0.20
44dbj|AB042069.1| Triticum aestivum rbcS gene for ribulose-1,5-bis... 44 0.20
45gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, comp... 42 0.78
46emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 ... 42 0.78
47gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cance... 42 0.78
48gb|AF192779.1|AF192779 Avena maroccana clone Ma4 ribulose-1,5-bi... 42 0.78
49gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodi... 42 0.78
50gb|AC170993.2| Mus musculus chromosome 1, clone wi1-2059I11, com... 40 3.1
51gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, compl... 40 3.1
52gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 3.1
53gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome... 40 3.1
54gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome... 40 3.1
55gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.1
56gb|AC113454.8| Mus musculus chromosome 3, clone RP24-176I19, com... 40 3.1
57ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 p... 40 3.1
58emb|AL513485.10| Human DNA sequence from clone RP11-48O20 on chr... 40 3.1
59emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on ch... 40 3.1
60emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chrom... 40 3.1
61gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Ca... 40 3.1
62gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's H... 40 3.1
63gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, com... 40 3.1
64gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, comp... 40 3.1
65dbj|AK054537.1| Mus musculus 2 days pregnant adult female ovary ... 40 3.1
66dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
67dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
68dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
69dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
70dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
71dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
72emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134... 40 3.1
73dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic D... 40 3.1
74emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 i... 40 3.1
75gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, co... 40 3.1
76gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 3.1
77emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa... 40 3.1
78emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on ch... 40 3.1
79gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, comp... 40 3.1
80dbj|AB020960.1| Bromus catharticus DNA for ribulose-1,5-bisphosp... 40 3.1 
>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9
          Length = 875

 Score =  323 bits (163), Expect = 1e-85
 Identities = 203/214 (94%), Gaps = 2/214 (0%)
 Strand = Plus / Minus

                                                                       
Query: 27  ttcacatacaagcatgttttcttcgagccatgtgtggtacatgaacatggacatacacat 86
           ||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 782 ttcacatacgagcatgctttct-cgagccatgt-tggtacatgaacatggacatacacat 725

                                                                       
Query: 87  attcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagagt 146
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 724 attcttaggaacaaataagaaagataaatggacaaggaaaacccaaagcaatgtcagagt 665

                                                                       
Query: 147 tgacaaaactgcaatggcactttatatgtggcccatcgncagtgagctgtttatgccttg 206
           |||||||||||||||||||||||||||| ||||| | |  ||||||||||||||||||||
Sbjct: 664 tgacaaaactgcaatggcactttatatgcggcccgtggtgagtgagctgtttatgccttg 605

                                             
Query: 207 ccggactcctcgcagcctggtggcttgaaggcga 240
           ||||||||||||||||| ||||||||||||||||
Sbjct: 604 ccggactcctcgcagcccggtggcttgaaggcga 571
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>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39 ribulosebisphosphate carboxylase) clones 234
           and 406
          Length = 743

 Score =  315 bits (159), Expect = 3e-83
 Identities = 199/210 (94%), Gaps = 2/210 (0%)
 Strand = Plus / Minus

                                                                       
Query: 31  catacaagcatgttttcttcgagccatgtgtggtacatgaacatggacatacacatattc 90
           ||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct: 657 catacgagcatgctttct-cgagccatgt-tggtacatgaacatggacatacacatattc 600

                                                                       
Query: 91  ttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgac 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgac 540

                                                                       
Query: 151 aaaactgcaatggcactttatatgtggcccatcgncagtgagctgtttatgccttgccgg 210
           ||||||||||||||||||||||| |||||  |||  ||||||||||||| ||||||||||
Sbjct: 539 aaaactgcaatggcactttatatatggcctgtcgtgagtgagctgtttaggccttgccgg 480

                                         
Query: 211 actcctcgcagcctggtggcttgaaggcga 240
           ||||||||||||| ||||||||||||||||
Sbjct: 479 actcctcgcagcccggtggcttgaaggcga 450
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>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase
           small subunit mRNA, clone pTS406, 3' end
          Length = 317

 Score =  315 bits (159), Expect = 3e-83
 Identities = 202/214 (94%), Gaps = 2/214 (0%)
 Strand = Plus / Minus

                                                                       
Query: 27  ttcacatacaagcatgttttcttcgagccatgtgtggtacatgaacatggacatacacat 86
           ||||||||| |||||| ||||| |||||||||| | ||||||||||||||||||||||||
Sbjct: 235 ttcacatacgagcatgctttct-cgagccatgt-tcgtacatgaacatggacatacacat 178

                                                                       
Query: 87  attcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagagt 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 attcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagagt 118

                                                                       
Query: 147 tgacaaaactgcaatggcactttatatgtggcccatcgncagtgagctgtttatgccttg 206
           ||||||||||||||||||||||||||| |||||  |||  ||||||||||||| ||||||
Sbjct: 117 tgacaaaactgcaatggcactttatatatggcctgtcgtgagtgagctgtttaggccttg 58

                                             
Query: 207 ccggactcctcgcagcctggtggcttgaaggcga 240
           ||||||||||||||||| ||||||||||||||||
Sbjct: 57  ccggactcctcgcagcccggtggcttgaaggcga 24
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>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC
           4.1.1.39) (ribulosebisphosphate carboxylase, clone 512)
          Length = 611

 Score =  295 bits (149), Expect = 3e-77
 Identities = 198/212 (93%), Gaps = 2/212 (0%)
 Strand = Plus / Minus

                                                                       
Query: 27  ttcacatacaagcatgttttcttcgagccatgtgtggtacatgaacatggacatacacat 86
           ||||||||| |||| | ||||| |||||||||| || |||||||||||||||||||||||
Sbjct: 510 ttcacatacgagcacgctttct-cgagccatgt-tgttacatgaacatggacatacacat 453

                                                                       
Query: 87  attcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagagt 146
           |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 452 attcttaggaacaagtaagaaagacaaatggagaaggaaaacccaaagcaatgtcagagt 393

                                                                       
Query: 147 tgacaaaactgcaatggcactttatatgtggcccatcgncagtgagctgtttatgccttg 206
           |||||||||||||||||||||||||||||||||| | |  ||||||||||||| ||||||
Sbjct: 392 tgacaaaactgcaatggcactttatatgtggcccgtggtgagtgagctgtttaggccttg 333

                                           
Query: 207 ccggactcctcgcagcctggtggcttgaaggc 238
           ||||||||||||||||| ||||||||||||||
Sbjct: 332 ccggactcctcgcagcccggtggcttgaaggc 301
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>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase, small subunit
          Length = 837

 Score =  285 bits (144), Expect = 3e-74
 Identities = 201/215 (93%), Gaps = 4/215 (1%)
 Strand = Plus / Minus

                                                                       
Query: 27  ttcacatacaagcatgttttcttcgagccatgtgtggtacatgaacatggacatacacat 86
           ||||||||| |||||| ||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 742 ttcacatacgagcatgctttct-cgagccatgt-tggtacatgaacatggacatacacat 685

                                                                       
Query: 87  attcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagagt 146
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagagt 625

                                                                       
Query: 147 tgacaaaactgcaatggcactttatatgt-ggcccatcgncagtgagctgtttatgcctt 205
           ||||||||||||||||||||||| ||| | ||||  |||  ||||||||||||| |||||
Sbjct: 624 tgacaaaactgcaatggcacttt-tatataggcctgtcgtgagtgagctgtttaggcctt 566

                                              
Query: 206 gccggactcctcgcagcctggtggcttgaaggcga 240
           |||||||||||||||||| ||||||||| ||||||
Sbjct: 565 gccggactcctcgcagcccggtggcttggaggcga 531
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>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit
           mRNA, complete cds
          Length = 816

 Score =  167 bits (84), Expect = 2e-38
 Identities = 192/214 (89%), Gaps = 12/214 (5%)
 Strand = Plus / Minus

                                                                       
Query: 27  ttcacatacaagcatgttttcttcgagccatgtgtggtacatgaacatggacatacacat 86
           ||||||||| |||||| ||||| ||||| |||| ||||||||||||||||   |||||| 
Sbjct: 706 ttcacatacgagcatgctttct-cgagc-atgt-tggtacatgaacatgggactacacac 650

                                                                       
Query: 87  attcttaggaacaaataagaaagataaatggagaaggaaaacccaaagcaatgtcagagt 146
           ||| |||||||||| |||||||||||| |||||||||||||||  ||||| |||||||||
Sbjct: 649 att-ttaggaacaa-taagaaagataa-tggagaaggaaaacc--aagca-tgtcagagt 596

                                                                       
Query: 147 tgacaaaactgcaatggcactttatatgtggcccatcgncagtgagctgtttatgccttg 206
           ||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||||||||
Sbjct: 595 tgacaaa-ctgcaatggcactt-atatgtg-cccatcgtcagtgagctgtttatgccttg 539

                                             
Query: 207 ccggactcctcgcagcctggtggcttgaaggcga 240
           || ||||||| |||||||||||||||||| ||||
Sbjct: 538 cccgactcctggcagcctggtggcttgaaagcga 505
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>dbj|AB042066.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p9-1
          Length = 739

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                   
Query: 201 gccttgccggactcctcgcagcctggtggcttgaaggcga 240
           ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 735 gccttgccggactcctcgcagcccggtggcttgaaggcga 696
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>dbj|AB042064.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p2-1
          Length = 653

 Score = 71.9 bits (36), Expect = 9e-10
 Identities = 39/40 (97%)
 Strand = Plus / Minus

                                                   
Query: 201 gccttgccggactcctcgcagcctggtggcttgaaggcga 240
           ||||||||||||||||||||||| ||||||||||||||||
Sbjct: 649 gccttgccggactcctcgcagcccggtggcttgaaggcga 610
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>emb|AJ131737.1|SCE131737 Secale cereale mRNA for hypothetical protein, clone 5
          Length = 845

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                      
Query: 196 tttatgccttgccggactcctcgcagcctggtggcttgaaggc 238
           |||||||||||||||| |||||||||| ||||||| |||||||
Sbjct: 596 tttatgccttgccggattcctcgcagcntggtggcctgaaggc 554
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>dbj|AB042067.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p10-1
          Length = 629

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 38/40 (95%)
 Strand = Plus / Minus

                                                   
Query: 201 gccttgccggactcctcgcagcctggtggcttgaaggcga 240
           |||||||||||||||||||| ||||||||| |||||||||
Sbjct: 625 gccttgccggactcctcgcaacctggtggcctgaaggcga 586
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>gb|AF202646.1|AF202646 Avena clauda clone ClG4 ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) gene, partial cds
          Length = 586

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 207 ccggactcctcgcagcctggtggcttgaaggcga 240
           ||||| ||||||||||||||||||||||||||||
Sbjct: 585 ccggattcctcgcagcctggtggcttgaaggcga 552
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>gb|M37477.1|WHTRUBIAB T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase
           (RUBISCO) gene, complete cds
          Length = 779

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                 
Query: 201 gccttgccggactcctcgcagcctggtggcttgaaggc 238
           ||||||||||| |||||||||||||||||| |||||||
Sbjct: 581 gccttgccggattcctcgcagcctggtggcctgaaggc 544
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>gb|M37328.1|WHTRUBIAA T.aestivum ribulose-1,5-bisphosphate carboxylase/oxygenase (RUBISCO)
            gene, exons 1 and 2
          Length = 2205

 Score = 60.0 bits (30), Expect = 3e-06
 Identities = 42/46 (91%)
 Strand = Plus / Minus

                                                          
Query: 195  gtttatgccttgccggactcctcgcagcctggtggcttgaaggcga 240
            ||||| |||||||||||||||||||| || |||||| |||||||||
Sbjct: 1511 gtttaggccttgccggactcctcgcaacccggtggcctgaaggcga 1466
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>gb|AF202645.1|AF202645 Avena clauda clone ClG2 ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) gene, partial cds
          Length = 600

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||||||||||||||||||||
Sbjct: 593 tcctcgcagcctggtggcttgaaggcga 566
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>gb|AF200303.1|AF200303 Avena clauda ribulose-1,5-bisphosphate carboxylase small subunit
           (rbcS) gene, nuclear gene encoding chloroplast protein,
           partial cds
          Length = 594

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||||||||||||||||||||
Sbjct: 587 tcctcgcagcctggtggcttgaaggcga 560
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>gb|AF192773.1|AF192773 Avena agadiriana ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) mRNA, nuclear gene encoding chloroplast
           protein, partial cds
          Length = 504

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||||||||||||||||||||
Sbjct: 497 tcctcgcagcctggtggcttgaaggcga 470
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>gb|AF097359.1|AF097359 Avena agadiriana ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) mRNA, nuclear gene encoding chloroplast
           protein, partial cds
          Length = 504

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||||||||||||||||||||
Sbjct: 497 tcctcgcagcctggtggcttgaaggcga 470
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>emb|AJ635206.1| Triticum durum ssp. durum partial mRNA for putative rubisco small
           subunit (rbcS gene)
          Length = 518

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                   
Query: 201 gccttgccggactcctcgcagcctggtggcttgaaggcga 240
           |||||||||||||||||||| || |||||| |||||||||
Sbjct: 514 gccttgccggactcctcgcaacccggtggcctgaaggcga 475
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>dbj|AB020945.1| Avena sativa DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Ave-A
          Length = 590

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 28/28 (100%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||||||||||||||||||||
Sbjct: 590 tcctcgcagcctggtggcttgaaggcga 563
to top
>gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, complete sequence
          Length = 183599

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                           
Query: 98    caaataagaaagataaatggagaaggaaaa 127
             ||||||||||||| ||||||||||||||||
Sbjct: 97466 caaataagaaagaaaaatggagaaggaaaa 97437
to top
>gb|AF202647.1|AF202647 Avena agadiriana ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) gene, partial cds
          Length = 593

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                             
Query: 207 ccggactcctcgcagcctggtggcttgaaggcga 240
           ||||| ||||||||||||||||||||||| ||||
Sbjct: 592 ccggattcctcgcagcctggtggcttgaatgcga 559
to top
>dbj|AB042068.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, complete cds,
           clone:p13-1
          Length = 985

 Score = 52.0 bits (26), Expect = 8e-04
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 201 gccttgccggactcctcgcagcctggtggcttgaaggc 238
           |||||||||||||||||||| || |||||| |||||||
Sbjct: 981 gccttgccggactcctcgcaacccggtggcctgaaggc 944
to top
>gb|AF192780.1|AF192780 Avena maroccana clone Ma7 ribulose-1,5-bisphosphate carboxylase
           small subunit (rbcS) mRNA, nuclear gene encoding
           chloroplast protein, partial cds
          Length = 504

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||||||||||||||| ||||
Sbjct: 497 tcctcgcagcctggtggcttgaatgcga 470
to top
>gb|AF192778.1|AF192778 Avena sterilis subsp. ludoviciana ribulose-1,5-bisphosphate
           carboxylase small subunit (rbcS) mRNA, nuclear gene
           encoding chloroplast protein, partial cds
          Length = 504

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||| ||||||||||||||||
Sbjct: 497 tcctcgcagcccggtggcttgaaggcga 470
to top
>gb|AF192777.1|AF192777 Avena clauda clone Cl9 ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) mRNA, nuclear gene encoding chloroplast
           protein, partial cds
          Length = 504

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||| ||||||||||||||||
Sbjct: 497 tcctcgcagcccggtggcttgaaggcga 470
to top
>gb|AF192776.1|AF192776 Avena clauda clone Cl5 ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) mRNA, nuclear gene encoding chloroplast
           protein, partial cds
          Length = 504

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||| ||||||||||||||||
Sbjct: 497 tcctcgcagcccggtggcttgaaggcga 470
to top
>gb|AF192775.1|AF192775 Avena strigosa clone Str5 ribulose-1,5-bisphosphate carboxylase
           small subunit (rbcS) mRNA, nuclear gene encoding
           chloroplast protein, partial cds
          Length = 504

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||| ||||||||||||||||
Sbjct: 497 tcctcgcagcccggtggcttgaaggcga 470
to top
>gb|AF192774.1|AF192774 Avena strigosa clone Str3 ribulose-1,5-bisphosphate carboxylase
           small subunit (rbcS) mRNA, nuclear gene encoding
           chloroplast protein, partial cds
          Length = 504

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||| ||||||||||||||||
Sbjct: 497 tcctcgcagcccggtggcttgaaggcga 470
to top
>gb|AF097361.1|AF097361 Avena clauda ribulose-1,5-bisphosphate carboxylase small subunit
           (rbcS) mRNA, nuclear gene encoding chloroplast protein,
           partial cds
          Length = 504

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||| ||||||||||||||||
Sbjct: 497 tcctcgcagcccggtggcttgaaggcga 470
to top
>gb|AF097360.1|AF097360 Avena strigosa ribulose-1,5-bisphosphate carboxylase small subunit
           (rbcS) mRNA, nuclear gene encoding chloroplast protein,
           partial cds
          Length = 504

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||| ||||||||||||||||
Sbjct: 497 tcctcgcagcccggtggcttgaaggcga 470
to top
>gb|AF104250.1|AF104250 Avena maroccana ribulose-1,5-bisphosphate carboxylase small subunit
           (rbcS) mRNA, nuclear gene encoding chloroplast protein,
           partial cds
          Length = 504

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||||||||||||||| ||||
Sbjct: 497 tcctcgcagcctggtggcttgaatgcga 470
to top
>gb|AF104249.1|AF104249 Avena vaviloviana ribulose-1,5-bisphosphate carboxylase small
           subunit (rbcS) mRNA, nuclear gene encoding chloroplast
           protein, partial cds
          Length = 504

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||| ||||||||||||||||
Sbjct: 497 tcctcgcagcccggtggcttgaaggcga 470
to top
>gb|AF096617.1|AF096617 Avena sterilis subsp. ludoviciana ribulose-1,5-bisphosphate
           carboxylase small subunit (rbcS) mRNA, partial cds
          Length = 504

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           ||||||||||| ||||||||||||||||
Sbjct: 497 tcctcgcagcccggtggcttgaaggcga 470
to top
>dbj|AB042065.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
           carboxylase/oxygenase Small subunit, complete cds,
           clone:p6-1
          Length = 638

 Score = 48.1 bits (24), Expect = 0.013
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 201 gccttgccggactcctcgcagcctggtggcttgaaggcga 240
           |||||||||||||||||||| || |||||| |||| ||||
Sbjct: 634 gccttgccggactcctcgcaacccggtggcctgaatgcga 595
to top
>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12,
              complete sequence
          Length = 155592

 Score = 46.1 bits (23), Expect = 0.050
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 63     gtacatgaacatggacatacaca 85
              |||||||||||||||||||||||
Sbjct: 152158 gtacatgaacatggacatacaca 152136
to top
>ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2
           (Ugt3a2), mRNA
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 124 aaaacccaaagcaatgtcagagttgacaaa 153
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
to top
>gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37820
           IMAGE:5098754), complete cds
          Length = 2196

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 124 aaaacccaaagcaatgtcagagttgacaaa 153
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
to top
>gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2,
           transcript variant 1, mRNA (cDNA clone MGC:37957
           IMAGE:5134131), complete cds
          Length = 2192

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 124 aaaacccaaagcaatgtcagagttgacaaa 153
           |||| ||||||||| |||||||||||||||
Sbjct: 849 aaaatccaaagcaaagtcagagttgacaaa 820
to top
>dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched
           library, clone:F430112M20 product:Hypothetical protein
           (Hypothetical UDP-glucoronosyl and UDP-glucosyl
           transferase containing protein), full insert sequence
          Length = 2284

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 124 aaaacccaaagcaatgtcagagttgacaaa 153
           |||| ||||||||| |||||||||||||||
Sbjct: 883 aaaatccaaagcaaagtcagagttgacaaa 854
to top
>dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched
           library, clone:D630011D02 product:HYPOTHETICAL 59.7 KDA
           PROTEIN [Mus musculus]; weakly similar to
           UDP-Glycosyltransferase/glycogen phosphorylase, full
           insert sequence
          Length = 1723

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 124 aaaacccaaagcaatgtcagagttgacaaa 153
           |||| ||||||||| |||||||||||||||
Sbjct: 878 aaaatccaaagcaaagtcagagttgacaaa 849
to top
>dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730018P11 product:hypothetical
           UDP-glucoronosyl and UDP-glucosyl transferase containing
           protein, full insert sequence
          Length = 2197

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 124 aaaacccaaagcaatgtcagagttgacaaa 153
           |||| ||||||||| |||||||||||||||
Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
to top
>dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length
           enriched library, clone:A530069C13 product:hypothetical
           UDP-Glycosyltransferase/glycogen phosphorylase structure
           containing protein, full insert sequence
          Length = 1353

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                         
Query: 124 aaaacccaaagcaatgtcagagttgacaaa 153
           |||| ||||||||| |||||||||||||||
Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
to top
>gb|AF202648.1|AF202648 Avena maroccana ribulose-1,5-bisphosphate carboxylase small subunit
           (rbcS) gene, partial cds
          Length = 620

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 31/34 (91%)
 Strand = Plus / Minus

                                             
Query: 207 ccggactcctcgcagcctggtggcttgaaggcga 240
           ||||| ||||||||||| ||||||||||| ||||
Sbjct: 619 ccggattcctcgcagcccggtggcttgaatgcga 586
to top
>dbj|AB042069.1| Triticum aestivum rbcS gene for ribulose-1,5-bisphosphate
            carboxylase/oxygenase small subunit, complete cds,
            clone:6, subclone:16
          Length = 5980

 Score = 44.1 bits (22), Expect = 0.20
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 195  gtttatgccttgccggactcctcgcagcctggtggcttgaaggcga 240
            ||||| |||||||| ||||||||||| || |||||| |||| ||||
Sbjct: 1265 gtttaggccttgccagactcctcgcaacccggtggcctgaatgcga 1220
to top
>gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, complete sequence
          Length = 141653

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 87     attcttaggaacaaataagaaagat 111
              ||||||||||||||| |||||||||
Sbjct: 131901 attcttaggaacaaaaaagaaagat 131877
to top
>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the
              ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a
              eukaryotic translation initiation factor 3 subunit 6
              interacting protein (EIF3S6IP) pseudogene, the 3' end of
              the ZNF11B gene for zinc finger protein 11b (KOX 2), a
              novel gene (FLJ23327) and two CpG Islands, complete
              sequence
          Length = 146328

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 133    agcaatgtcagagttgacaaa 153
              |||||||||||||||||||||
Sbjct: 137861 agcaatgtcagagttgacaaa 137841
to top
>gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 221540

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 87     attcttaggaacaaataagaaagat 111
              ||||||||||||||| |||||||||
Sbjct: 193767 attcttaggaacaaaaaagaaagat 193791
to top
>gb|AF192779.1|AF192779 Avena maroccana clone Ma4 ribulose-1,5-bisphosphate carboxylase
           small subunit (rbcS) mRNA, nuclear gene encoding
           chloroplast protein, partial cds
          Length = 504

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 216 tcgcagcctggtggcttgaaggcga 240
           |||||||| ||||||||||||||||
Sbjct: 494 tcgcagcccggtggcttgaaggcga 470
to top
>gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodium channel subtype 2
            (rSkM2) gene
          Length = 2825

 Score = 42.1 bits (21), Expect = 0.78
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 67   atgaacatggacatacacata 87
            |||||||||||||||||||||
Sbjct: 1420 atgaacatggacatacacata 1400
to top
>gb|AC170993.2| Mus musculus chromosome 1, clone wi1-2059I11, complete sequence
          Length = 41406

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 63    gtacatgaacatggacatacacatattc 90
             ||||||||||||| ||||| ||||||||
Sbjct: 12032 gtacatgaacatgtacatatacatattc 12005
to top
>gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, complete sequence
          Length = 45765

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 63    gtacatgaacatggacatacacatattc 90
             ||||||||||||| ||||| ||||||||
Sbjct: 41180 gtacatgaacatgtacatatacatattc 41153
to top
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete
               sequence
          Length = 1178688

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 125     aaacccaaagcaatgtcaga 144
               ||||||||||||||||||||
Sbjct: 1130897 aaacccaaagcaatgtcaga 1130916
to top
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0024K17 map near S16403, complete sequence
          Length = 172238

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 65   acatgaacatggacatacacatat 88
            ||||||||||| ||||||||||||
Sbjct: 4895 acatgaacatgaacatacacatat 4872
to top
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13
              map near C50029S, complete sequence
          Length = 129900

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 65     acatgaacatggacatacacatat 88
              ||||||||||| ||||||||||||
Sbjct: 123589 acatgaacatgaacatacacatat 123566
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 65       acatgaacatggacatacacatat 88
                ||||||||||| ||||||||||||
Sbjct: 24888607 acatgaacatgaacatacacatat 24888584
to top
>gb|AC113454.8| Mus musculus chromosome 3, clone RP24-176I19, complete sequence
          Length = 171480

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    aaataagaaagataaatgga 118
             ||||||||||||||||||||
Sbjct: 75761 aaataagaaagataaatgga 75742
to top
>ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 protein phosphatase
           (CNI04270) partial mRNA
          Length = 3071

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 125 aaacccaaagcaatgtcaga 144
           ||||||||||||||||||||
Sbjct: 80  aaacccaaagcaatgtcaga 99
to top
>emb|AL513485.10| Human DNA sequence from clone RP11-48O20 on chromosome 1 Contains the
             TAGLN2 gene for transgelin 2, the IGSF9 gene for
             immunoglobulin superfamily member 9, the SLAMF9 gene for
             SLAM family member 9, a novel gene and three CpG islands,
             complete sequence
          Length = 80398

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   aaagataaatggagaaggaa 125
             ||||||||||||||||||||
Sbjct: 46055 aaagataaatggagaaggaa 46074
to top
>emb|AL356534.12| Human DNA sequence from clone RP11-629P13 on chromosome 6, complete
              sequence
          Length = 175757

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 151    aaaactgcaatggcacttta 170
              ||||||||||||||||||||
Sbjct: 166594 aaaactgcaatggcacttta 166575
to top
>emb|AL354883.14| Human DNA sequence from clone RP1-67N4 on chromosome 1 Contains part of
             the DAB1 gene for disabled homolog 1 (Drosophila),
             complete sequence
          Length = 134011

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 141   cagagttgacaaaactgcaatggc 164
             |||||||||||||||| |||||||
Sbjct: 88758 cagagttgacaaaactacaatggc 88735
to top
>gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 151302

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 81   acacatattcttaggaacaaataagaaa 108
            |||||||||||||| |||||| ||||||
Sbjct: 9178 acacatattcttagtaacaaaaaagaaa 9151
to top
>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 147560

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 95    gaacaaataagaaagataaa 114
             ||||||||||||||||||||
Sbjct: 45388 gaacaaataagaaagataaa 45407
to top
>gb|AC163014.5| Mus musculus chromosome 8, clone RP23-216D14, complete sequence
          Length = 208407

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    aagataaatggagaaggaaa 126
              ||||||||||||||||||||
Sbjct: 190875 aagataaatggagaaggaaa 190894
to top
>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence
          Length = 139476

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 67    atgaacatggacatacacatattc 90
             |||||||||| |||||||||||||
Sbjct: 31202 atgaacatgggcatacacatattc 31225
to top
>dbj|AK054537.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN
           full-length enriched library, clone:E330038M22
           product:unclassifiable, full insert sequence
          Length = 3845

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 63  gtacatgaacatggacatacacatattc 90
           ||||||||||||| ||||| ||||||||
Sbjct: 695 gtacatgaacatgtacatatacatattc 722
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 109     gataaatggagaaggaaaac 128
               ||||||||||||||||||||
Sbjct: 4847879 gataaatggagaaggaaaac 4847860
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 65       acatgaacatggacatacacatat 88
                ||||||||||| ||||||||||||
Sbjct: 11682609 acatgaacatgaacatacacatat 11682586



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 65       acatgaacatggacatacacatat 88
                ||||||||||| ||||||||||||
Sbjct: 10428734 acatgaacatgaacatacacatat 10428757
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 65       acatgaacatggacatacacatat 88
                ||||||||||| ||||||||||||
Sbjct: 24979677 acatgaacatgaacatacacatat 24979654
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 118     agaaggaaaacccaaagcaa 137
               ||||||||||||||||||||
Sbjct: 1491873 agaaggaaaacccaaagcaa 1491854
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>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:B1026E06
          Length = 162784

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 65   acatgaacatggacatacacatat 88
            ||||||||||| ||||||||||||
Sbjct: 5348 acatgaacatgaacatacacatat 5371
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>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBb0005N06
          Length = 140639

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 65    acatgaacatggacatacacatat 88
             ||||||||||| ||||||||||||
Sbjct: 31151 acatgaacatgaacatacacatat 31128
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>emb|AL713953.3|CNS07YPY Oryza sativa chromosome 12, . BAC OJ1134_A05 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 120825

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   gataaatggagaaggaaaac 128
             ||||||||||||||||||||
Sbjct: 90543 gataaatggagaaggaaaac 90562
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>dbj|AP004886.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0576F08
          Length = 135314

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   agaaggaaaacccaaagcaa 137
             ||||||||||||||||||||
Sbjct: 55294 agaaggaaaacccaaagcaa 55275
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>emb|BX255893.5| Zebrafish DNA sequence from clone CH211-272H10 in linkage group 4,
             complete sequence
          Length = 99176

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    tacagcatttcacatacaagcatg 42
             ||||||||||||||| ||||||||
Sbjct: 36342 tacagcatttcacattcaagcatg 36365
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>gb|AC108915.12| Mus musculus chromosome 8, clone RP23-444O13, complete sequence
          Length = 178228

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    aagataaatggagaaggaaa 126
              ||||||||||||||||||||
Sbjct: 104567 aagataaatggagaaggaaa 104586
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 109     gataaatggagaaggaaaac 128
               ||||||||||||||||||||
Sbjct: 4847860 gataaatggagaaggaaaac 4847841
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>emb|BX536967.2|CNS09SBH Oryza sativa chromosome 12, . BAC OSJNBa0029N15 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 141053

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    gataaatggagaaggaaaac 128
              ||||||||||||||||||||
Sbjct: 112081 gataaatggagaaggaaaac 112100
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>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete
             sequence
          Length = 201821

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 67    atgaacatggacatacacat 86
             ||||||||||||||||||||
Sbjct: 17489 atgaacatggacatacacat 17470
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>gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, complete sequence
          Length = 208713

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 63    gtacatgaacatggacatacacatattc 90
             ||||||||||||| ||||| ||||||||
Sbjct: 68296 gtacatgaacatgtacatatacatattc 68323
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>dbj|AB020960.1| Bromus catharticus DNA for ribulose-1,5-bisphosphate
           carboxylase/oxygenase small subunit, partial cds, clone
           Bro-B
          Length = 784

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 213 tcctcgcagcctggtggcttgaaggcga 240
           |||||||| || ||||||||||||||||
Sbjct: 784 tcctcgcaacccggtggcttgaaggcga 757


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,671,605
Number of Sequences: 3902068
Number of extensions: 2671605
Number of successful extensions: 53246
Number of sequences better than 10.0: 80
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53052
Number of HSP's gapped (non-prelim): 189
length of query: 240
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 218
effective length of database: 17,147,199,772
effective search space: 3738089550296
effective search space used: 3738089550296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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