ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal33p01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY663412.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 0.75
2gb|AY663410.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 0.75
3gb|AY663408.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 0.75
4gb|AY663407.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 0.75
5gb|AY663405.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 0.75
6gb|AY663404.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 0.75
7gb|AY663402.1| Gorilla gorilla voucher Coriell Cell Repository D... 42 0.75
8gb|AY663399.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 0.75
9gb|AY663397.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 0.75
10gb|AY663396.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 0.75
11gb|AY663394.1| Homo sapiens voucher Coriell Cell Repository DNA ... 42 0.75
12emb|CR854861.1| Human DNA sequence from clone XX-BQB97F8_109B10_... 42 0.75
13emb|Z84489.1|HS93N13 Human DNA sequence from clone RP1-93N13 on ... 42 0.75
14emb|AL662842.3| Human DNA sequence from clone XXbac-181I15 on ch... 42 0.75
15emb|CR753901.9| Human DNA sequence from clone DADB-166N19 on chr... 42 0.75
16emb|CR753835.3| Human DNA sequence from clone DAMA-265D9 on chro... 42 0.75
17emb|CR753309.2| Human DNA sequence from clone DADB-102D14 on chr... 42 0.75
18gb|AC154217.2| Mus musculus BAC clone RP24-357L19 from chromosom... 42 0.75
19ref|NM_189664.1| Oryza sativa (japonica cultivar-group), predic... 40 2.9
20emb|BX890620.9| Zebrafish DNA sequence from clone DKEY-48C14 in ... 40 2.9
21dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
22gb|AC156569.3| Mus musculus BAC clone RP23-315K10 from chromosom... 40 2.9
23dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.9
24dbj|AK109404.2| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.9
25dbj|AK104471.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.9
26dbj|AK104183.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.9
27dbj|AK100363.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.9
28dbj|AK061466.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.9
29dbj|AK060964.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 2.9
30emb|CT030714.5| Mouse DNA sequence from clone RP23-223P19 on chr... 40 2.9
31emb|AL929503.4| Zebrafish DNA sequence from clone CH211-158I6, c... 40 2.9 
>gb|AY663412.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA00576 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*0505 allele, and MHC class
             II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*110101 allele,
             complete cds
          Length = 108785

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 49100 gtgaagaaaaagtacagtgag 49080
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>gb|AY663410.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA00576 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*030302
             allele and MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*0302 allele, complete cds; and MHC class II
             antigen (HLA-DRB1) gene, partial cds
          Length = 105171

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 71811 gtgaagaaaaagtacagtgag 71791
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>gb|AY663408.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA04535 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*010401 allele, and MHC
             class II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*140501
             allele, complete cds
          Length = 100515

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 53828 gtgaagaaaaagtacagtgag 53808
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>gb|AY663407.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10923 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*020101
             allele, MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*050101 allele, and MHC class II antigen
             (HLA-DRB1) gene, HLA-DRB1-DRB1*030101 allele, complete cds
          Length = 106318

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 60591 gtgaagaaaaagtacagtgag 60571
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>gb|AY663405.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10540 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*010401 allele, and MHC
             class II antigen (HLA-DRB1) gene, complete cds
          Length = 116082

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 56156 gtgaagaaaaagtacagtgag 56136
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>gb|AY663404.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA10540 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*030302
             allele and MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*0302 allele, complete cds; and MHC class II
             antigen (HLA-DRB1) gene, partial cds
          Length = 109441

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 77105 gtgaagaaaaagtacagtgag 77085
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>gb|AY663402.1| Gorilla gorilla voucher Coriell Cell Repository DNA sample NG05251 MHC
             class II antigen (HLA-DRB1) gene, complete cds
          Length = 54488

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 15227 gtgaagaaaaagtacagtgag 15207
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>gb|AY663399.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA01018 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*020101
             allele, MHC class II antigen (HLA-DQA1) gene,
             HLA-DQA1-DQA1*050101 allele, and MHC class II antigen
             (HLA-DRB1) gene, HLA-DRB1-DRB1*030101 allele, complete cds
          Length = 105464

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 53906 gtgaagaaaaagtacagtgag 53886
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>gb|AY663397.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA01960 MHC
             class II antigen (HLA-DQB1), MHC class II antigen
             (HLA-DQA1), and MHC class II antigen (HLA-DRB1) genes,
             complete cds
          Length = 94591

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 49295 gtgaagaaaaagtacagtgag 49275
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>gb|AY663396.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14660 MHC
             class II antigen (HLA-DQB1) gene, HLA-DQB1-DQB1*050101
             allele and MHC class II antigen (HLA-DQA1) gene, complete
             cds; and MHC class II antigen (HLA-DRB1) gene, partial cds
          Length = 100091

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 65800 gtgaagaaaaagtacagtgag 65780
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>gb|AY663394.1| Homo sapiens voucher Coriell Cell Repository DNA sample NA14661 MHC
             class II antigen (HLA-DQB1) gene, MHC class II antigen
             (HLA-DQA1) gene, HLA-DQA1-DQA1*0505 allele, and MHC class
             II antigen (HLA-DRB1) gene, HLA-DRB1-DRB1*110401 allele,
             complete cds
          Length = 127159

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 68567 gtgaagaaaaagtacagtgag 68547
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>emb|CR854861.1| Human DNA sequence from clone XX-BQB97F8_109B10_3 on chromosome 6,
            complete sequence
          Length = 8396

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 130  gtgaagaaaaagtacagtgag 150
            |||||||||||||||||||||
Sbjct: 2597 gtgaagaaaaagtacagtgag 2617
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>emb|Z84489.1|HS93N13 Human DNA sequence from clone RP1-93N13 on chromosome 6p21 Contains the
             HLA-DRB1*03011 and HLA-DQA1*05011 genes for major
             histocompatibility complex class II DR beta 1 and DQ alpha
             1, a CpG island, ESTs, STSs and GSSs, complete sequence
          Length = 86896

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 40388 gtgaagaaaaagtacagtgag 40368
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>emb|AL662842.3| Human DNA sequence from clone XXbac-181I15 on chromosome 6 contains the
              HLA-DRB3 gene for major histocompatibility complex, class
              II, DR beta 3, a major histocompatibility complex, class
              II, DR beta pseudogene, the HLA-DRB1 gene for major
              histocompatibility complex, class II, DR beta 1 and one CpG
              island, complete sequence
          Length = 130819

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 130    gtgaagaaaaagtacagtgag 150
              |||||||||||||||||||||
Sbjct: 110645 gtgaagaaaaagtacagtgag 110665
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>emb|CR753901.9| Human DNA sequence from clone DADB-166N19 on chromosome 6, complete
            sequence
          Length = 110625

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 130  gtgaagaaaaagtacagtgag 150
            |||||||||||||||||||||
Sbjct: 2495 gtgaagaaaaagtacagtgag 2515
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>emb|CR753835.3| Human DNA sequence from clone DAMA-265D9 on chromosome 6, complete
             sequence
          Length = 101064

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 70801 gtgaagaaaaagtacagtgag 70821
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>emb|CR753309.2| Human DNA sequence from clone DADB-102D14 on chromosome 6, complete
             sequence
          Length = 107898

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 130   gtgaagaaaaagtacagtgag 150
             |||||||||||||||||||||
Sbjct: 79720 gtgaagaaaaagtacagtgag 79740
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>gb|AC154217.2| Mus musculus BAC clone RP24-357L19 from chromosome 17, complete sequence
          Length = 183535

 Score = 42.1 bits (21), Expect = 0.75
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 143    acagtgagaaggtgttacaggcatgagaa 171
              |||| ||||||||| ||||||||||||||
Sbjct: 115536 acagagagaaggtggtacaggcatgagaa 115508
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>ref|NM_189664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 912

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 cggccacggccaagaagcag 199
           ||||||||||||||||||||
Sbjct: 40  cggccacggccaagaagcag 21
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>emb|BX890620.9| Zebrafish DNA sequence from clone DKEY-48C14 in linkage group 14,
              complete sequence
          Length = 214857

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 119    tgcacaccaatgtgaagaaaaagt 142
              ||||||||| ||||||||||||||
Sbjct: 193251 tgcacaccattgtgaagaaaaagt 193228
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 180     cggccacggccaagaagcag 199
               ||||||||||||||||||||
Sbjct: 4872532 cggccacggccaagaagcag 4872551
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>gb|AC156569.3| Mus musculus BAC clone RP23-315K10 from chromosome 13, complete
             sequence
          Length = 165570

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 183   ccacggccaagaagcagtat 202
             ||||||||||||||||||||
Sbjct: 51899 ccacggccaagaagcagtat 51880
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>dbj|AP002743.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0710E05
          Length = 179714

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    cggccacggccaagaagcag 199
              ||||||||||||||||||||
Sbjct: 117181 cggccacggccaagaagcag 117200
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>dbj|AK109404.2| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-E06, full
           insert sequence
          Length = 1095

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 cggccacggccaagaagcag 199
           ||||||||||||||||||||
Sbjct: 63  cggccacggccaagaagcag 44
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>dbj|AK104471.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-301-D10, full
           insert sequence
          Length = 1094

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 cggccacggccaagaagcag 199
           ||||||||||||||||||||
Sbjct: 62  cggccacggccaagaagcag 43
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>dbj|AK104183.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-302-C11, full
           insert sequence
          Length = 1095

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 cggccacggccaagaagcag 199
           ||||||||||||||||||||
Sbjct: 63  cggccacggccaagaagcag 44
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>dbj|AK100363.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083N07, full
           insert sequence
          Length = 1308

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 cggccacggccaagaagcag 199
           ||||||||||||||||||||
Sbjct: 276 cggccacggccaagaagcag 257
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>dbj|AK061466.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C05, full
           insert sequence
          Length = 1095

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 cggccacggccaagaagcag 199
           ||||||||||||||||||||
Sbjct: 63  cggccacggccaagaagcag 44
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>dbj|AK060964.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-202-B05, full
           insert sequence
          Length = 1114

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 180 cggccacggccaagaagcag 199
           ||||||||||||||||||||
Sbjct: 63  cggccacggccaagaagcag 44
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>emb|CT030714.5| Mouse DNA sequence from clone RP23-223P19 on chromosome 13, complete
              sequence
          Length = 176581

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    ccacggccaagaagcagtat 202
              ||||||||||||||||||||
Sbjct: 165197 ccacggccaagaagcagtat 165178
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>emb|AL929503.4| Zebrafish DNA sequence from clone CH211-158I6, complete sequence
          Length = 174012

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 119   tgcacaccaatgtgaagaaaaagt 142
             ||||||||| ||||||||||||||
Sbjct: 17299 tgcacaccattgtgaagaaaaagt 17322


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,490,325
Number of Sequences: 3902068
Number of extensions: 2490325
Number of successful extensions: 50244
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50198
Number of HSP's gapped (non-prelim): 46
length of query: 230
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 208
effective length of database: 17,147,199,772
effective search space: 3566617552576
effective search space used: 3566617552576
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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