ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34d15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CT030182.8| Mouse DNA sequence from clone RP23-21N15 on chro... 42 1.8
2gb|AC166289.4| Mus musculus chromosome 7, clone RP24-132A16, com... 40 7.2
3ref|NM_189245.1| Oryza sativa (japonica cultivar-group), predic... 40 7.2
4gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, compl... 40 7.2
5gb|AC101762.7| Mus musculus chromosome 7, clone RP24-315G8, comp... 40 7.2
6gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 40 7.2
7emb|AL451047.7| Human DNA sequence from clone RP11-1B20 on chrom... 40 7.2
8emb|AL353605.12| Human DNA sequence from clone RP11-364M22 on ch... 40 7.2
9dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
10gb|AC158314.5| Mus musculus chromosome 7, clone RP23-145E21, com... 40 7.2
11dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.2
12dbj|AK103881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.2
13emb|AL929455.8| Mouse DNA sequence from clone RP23-463J10 on chr... 40 7.2

>emb|CT030182.8| Mouse DNA sequence from clone RP23-21N15 on chromosome 13, complete
              sequence
          Length = 218811

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 106    aataacaacacacatgatcagctac 130
              |||||||||| ||||||||||||||
Sbjct: 182960 aataacaacagacatgatcagctac 182984



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>gb|AC166289.4| Mus musculus chromosome 7, clone RP24-132A16, complete sequence
          Length = 172931

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 380    gagagctaaccttcttccag 399
              ||||||||||||||||||||
Sbjct: 134268 gagagctaaccttcttccag 134287



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>ref|NM_189245.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 591

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 480 tgctgctgctcgtaggcgtcgtcc 503
           ||||||||||||||| ||||||||
Sbjct: 71  tgctgctgctcgtagtcgtcgtcc 48



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>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome
          Length = 3188609

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 500     gtccgacagcgcctcgagcg 519
               ||||||||||||||||||||
Sbjct: 2357197 gtccgacagcgcctcgagcg 2357178



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>gb|AC101762.7| Mus musculus chromosome 7, clone RP24-315G8, complete sequence
          Length = 185445

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 380    gagagctaaccttcttccag 399
              ||||||||||||||||||||
Sbjct: 139488 gagagctaaccttcttccag 139507



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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 496     cgtcgtccgacagcgcctcg 515
               ||||||||||||||||||||
Sbjct: 3594603 cgtcgtccgacagcgcctcg 3594584



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>emb|AL451047.7| Human DNA sequence from clone RP11-1B20 on chromosome 1 Contains part
             of the CDC42BPA gene for CDC42 binding protein kinase
             alpha (DMPK-like), a novel gene and a CpG island, complete
             sequence
          Length = 77054

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 181   gaagagaatgggttcacagt 200
             ||||||||||||||||||||
Sbjct: 68394 gaagagaatgggttcacagt 68375



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>emb|AL353605.12| Human DNA sequence from clone RP11-364M22 on chromosome 9, complete
             sequence
          Length = 135153

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   aataatctaatcttagctag 174
             ||||||||||||||||||||
Sbjct: 44068 aataatctaatcttagctag 44049



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 480      tgctgctgctcgtaggcgtcgtcc 503
                ||||||||||||||| ||||||||
Sbjct: 16500469 tgctgctgctcgtagtcgtcgtcc 16500492



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>gb|AC158314.5| Mus musculus chromosome 7, clone RP23-145E21, complete sequence
          Length = 185668

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 380    gagagctaaccttcttccag 399
              ||||||||||||||||||||
Sbjct: 168206 gagagctaaccttcttccag 168187



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>dbj|AP004767.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1460_H08
          Length = 113514

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 480   tgctgctgctcgtaggcgtcgtcc 503
             ||||||||||||||| ||||||||
Sbjct: 21139 tgctgctgctcgtagtcgtcgtcc 21162



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>dbj|AK103881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033149O18, full
           insert sequence
          Length = 900

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 480 tgctgctgctcgtaggcgtcgtcc 503
           ||||||||||||||| ||||||||
Sbjct: 172 tgctgctgctcgtagtcgtcgtcc 149



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>emb|AL929455.8| Mouse DNA sequence from clone RP23-463J10 on chromosome 2, complete
             sequence
          Length = 84387

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 449   tctccactctgttctgagtt 468
             ||||||||||||||||||||
Sbjct: 26396 tctccactctgttctgagtt 26377


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,781,488
Number of Sequences: 3902068
Number of extensions: 3781488
Number of successful extensions: 59632
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59548
Number of HSP's gapped (non-prelim): 84
length of query: 531
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 508
effective length of database: 17,143,297,704
effective search space: 8708795233632
effective search space used: 8708795233632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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