>GAG_HV2ST (P20874) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 520

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 263 GRRGREARDPPYPEVADPFLEVGSSDMRC 349
           G+R RE R+ PY EV + FL++   +  C
Sbjct: 474 GKRQREQRERPYKEVTEDFLQLEKQETPC 502

>Y752_METJA (Q58162) Hypothetical protein MJ0752|
          Length = 76

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = -1

Query: 137 WQNNHFPRYHYYQCHASCLVS 75
           W+   +P+YH + CH++C V+
Sbjct: 53  WKEKWYPKYHTHYCHSACRVA 73


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,479,983
Number of Sequences: 219361
Number of extensions: 1866952
Number of successful extensions: 5579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5566
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7706249192
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)