Clone Information

BLAST Search Result

Clone Name	rbaal34d11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY661558.1\| Hordeum vulgare subsp. vulgare eIF4E gene locus, ...	139	1e-29
2	gb\|AF509775.1\| Hordeum vulgare subsp. vulgare isolate RSB409A Rp...	129	1e-26
3	gb\|AF509774.1\| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg...	129	1e-26
4	gb\|AY643844.1\|AY643842S3 Hordeum vulgare subsp. vulgare clones B...	127	6e-26
5	emb\|Y14573.1\|HVCH4H Hordeum vulgare DNA for chromosome 4H	127	6e-26
6	gb\|AF453665.1\| Hordeum vulgare isolate HV Sukkula retrotransposo...	119	1e-23
7	gb\|AY054377.1\| Hordeum vulgare clone LTR-INS1 Sukkula retrotrans...	119	1e-23
8	gb\|AY054376.1\| Hordeum vulgare Sukkula retrotransposon long term...	119	1e-23
9	gb\|AF254799.1\|AF254799 Hordeum vulgare tonoplast intrinsic prote...	119	1e-23
10	gb\|AY485643.1\| Hordeum vulgare subsp. vulgare BAC 615K1, complet...	100	1e-17
11	gb\|AY643843.1\|AY643842S2 Hordeum vulgare subsp. vulgare clones B...	98	5e-17
12	gb\|AY054380.1\| Hordeum patagonicum clone HpaLTR-INS Sukkula retr...	92	3e-15
13	gb\|AF474373.1\| Hordeum vulgare subsp. vulgare BAC 259I16, comple...	86	2e-13
14	gb\|AY054379.1\| Hordeum murinum clone HmuLTR-INS Sukkula retrotra...	80	1e-11
15	gb\|AF474072.1\| Hordeum vulgare sp. vulgare cultivar Morex BAC cl...	66	2e-07
16	gb\|AC152076.4\| Mus musculus BAC clone RP23-326O10 from chromosom...	46	0.16
17	gb\|AC136513.2\| Mus musculus BAC clone RP23-477N9 from chromosome...	46	0.16
18	gb\|AC124578.4\| Mus musculus BAC clone RP23-166C2 from 18, comple...	46	0.16
19	ref\|XM_505065.1\| Yarrowia lipolytica CLIB122, YALI0F06138g predi...	46	0.16
20	emb\|AL669941.12\| Mouse DNA sequence from clone RP23-288B4 on chr...	46	0.16
21	dbj\|AP002760.4\| Homo sapiens genomic DNA, chromosome 11 clone:RP...	46	0.16
22	emb\|CR382132.1\| Yarrowia lipolytica chromosome F of strain CLIB1...	46	0.16
23	gb\|AC165948.2\| Mus musculus BAC clone RP24-430M9 from chromosome...	44	0.65
24	gb\|AF326781.1\| Triticum monococcum actin (ACT-1) gene, partial c...	44	0.65
25	gb\|AC163346.3\| Mus musculus BAC clone RP23-370A2 from chromosome...	44	0.65
26	gb\|AC122050.3\| Mus musculus BAC clone RP24-457L7 from chromosome...	44	0.65
27	gb\|AC009852.9\| Homo sapiens chromosome 15 clone RP11-402F9 map 1...	44	0.65
28	gb\|AC158369.4\| Pan troglodytes BAC clone CH251-554F11 from chrom...	44	0.65
29	gb\|AC078797.20\| Homo sapiens 3 BAC RP11-125E8 (Roswell Park Canc...	44	0.65
30	gb\|AC008000.7\|AC008000 Homo sapiens 3q25-26 BAC CITB-371O18 (Cal...	44	0.65
31	gb\|AF004836.1\|AF004836 Homo sapiens eukaryotic initiation factor...	44	0.65
32	gb\|AC165951.3\| Mus musculus BAC clone RP24-137B13 from chromosom...	44	0.65
33	gb\|AC134555.4\| Mus musculus BAC clone RP24-320K4 from 17, comple...	44	0.65
34	gb\|AC018839.5\| Homo sapiens chromosome 3 clone RP11-593J10 map 3...	44	0.65
35	gb\|AC090841.2\| Homo sapiens chromosome 3 clone RP11-1082A18 map ...	44	0.65
36	gb\|AC160105.2\| Mus musculus BAC clone RP24-353L12 from chromosom...	42	2.6
37	gb\|AC109162.12\| Mus musculus chromosome 7, clone RP24-177G14, co...	42	2.6
38	gb\|AC117214.3\| Mus musculus BAC clone RP23-307B15 from chromosom...	42	2.6
39	gb\|AC098738.2\| Mus musculus BAC clone RP23-122F7 from 8, complet...	42	2.6
40	ref\|XM_786014.1\| PREDICTED: Strongylocentrotus purpuratus simila...	42	2.6
41	gb\|CP000091.1\| Ralstonia eutropha JMP134 chromosome 2, complete ...	42	2.6
42	emb\|AL049868.20\|HSJ927M24 Human DNA sequence from clone RP5-927M...	42	2.6
43	gb\|AC164163.2\| Mus musculus BAC clone RP23-243L21 from chromosom...	42	2.6
44	gb\|AC103996.7\| Homo sapiens chromosome 15, clone RP11-76E17, com...	42	2.6
45	dbj\|AK156772.1\| Mus musculus activated spleen cDNA, RIKEN full-l...	42	2.6
46	gb\|AC162801.2\| Mus musculus BAC clone RP24-65E6 from chromosome ...	42	2.6
47	emb\|BX890578.6\| Mouse DNA sequence from clone RP23-72P20 on chro...	42	2.6
48	gb\|AC004616.1\| Homo sapiens X BAC GSHB-536K7 (Genome Systems Hum...	42	2.6
49	dbj\|BA000030.2\| Streptomyces avermitilis MA-4680 genomic DNA, co...	42	2.6
50	gb\|AC154502.2\| Mus musculus BAC clone RP24-87I20 from chromosome...	42	2.6
51	emb\|CT030235.12\| Mouse DNA sequence from clone RP23-240F19 on ch...	42	2.6
52	emb\|AL672069.10\| Mouse DNA sequence from clone RP23-343O22 on ch...	42	2.6

>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score =  139 bits (70), Expect = 1e-29
 Identities = 184/220 (83%), Gaps = 3/220 (1%)
 Strand = Plus / Minus

                                                                          
Query: 5      aggttgaaggtttt-atgacaatgttgagaggtttacatttagcaggtggtaggcaacta 63
              ||||||||||| || ||| || |||||||||| | | ||||| || |||||||||||| |
Sbjct: 325732 aggttgaaggtattcatggcattgttgagaggctgatatttaacatgtggtaggcaacga 325673

                                                                          
Query: 64     gacataat-gaaagaaacgagacaactagcatgacattgatagtaatggtatctagggaa 122
              |||||||  || |||| ||| | |||||||||| || ||||||||||||||||| |||||
Sbjct: 325672 gacataaccgacagaagcgataaaactagcatggcaatgatagtaatggtatctggggaa 325613

                                                                          
Query: 123    atggttattttgccagagatcccacttgnnnnnnngaacgaatccgtgaatcagacgaac 182
              ||||| || ||||| |||||||||||||       |||| | ||||||||  ||||||||
Sbjct: 325612 atggtcatcttgcctgagatcccacttg-gaagaagaacaactccgtgaagtagacgaac 325554

                                                      
Query: 183    cgacgtagtcgaacggatccttacattccgacacgcttgc 222
              | |||||||||||||| |||| ||||||||||||||||||
Sbjct: 325553 caacgtagtcgaacgggtcctcacattccgacacgcttgc 325514



 Score =  115 bits (58), Expect = 2e-22
 Identities = 182/220 (82%), Gaps = 4/220 (1%)
 Strand = Plus / Minus

                                                                          
Query: 5      aggttgaaggtttt-atgacaatgttgagaggtttacatttagcaggtggtaggcaacta 63
              |||||||||||| | ||| || |||||||||| | | ||||| || |||||||||||| |
Sbjct: 130177 aggttgaaggttatcatggcattgttgagaggctgatatttaacatgtggtaggcaacga 130118

                                                                          
Query: 64     gacataat-gaaagaaacgagacaactagcatgacattgatagtaatggtatctagggaa 122
              |||||||| || |||| ||| | |||||||||| || |||||||||||||||||  ||||
Sbjct: 130117 gacataatcgatagaagcgataaaactagcatggcaatgatagtaatggtatctgtggaa 130058

                                                                          
Query: 123    atggttattttgccagagatcccacttgnnnnnnngaacgaatccgtgaatcagacgaac 182
              ||||| || ||||| |||||||| ||||       ||| |  |||||||| || ||||||
Sbjct: 130057 atggtcatcttgcctgagatcccgcttg-gaagaagaatgtctccgtgaagcacacgaac 129999

                                                      
Query: 183    cgacgtagtcgaacggatccttacattccgacacgcttgc 222
              |||||||||||||||| |||| ||| ||||||||||||||
Sbjct: 129998 cgacgtagtcgaacgggtcctcaca-tccgacacgcttgc 129960



 Score =  103 bits (52), Expect = 8e-19
 Identities = 163/198 (82%), Gaps = 3/198 (1%)
 Strand = Plus / Minus

                                                                          
Query: 26     tgttgagaggtttacatttagcaggtggtaggcaactagacataat-gaaagaaacgaga 84
              |||||||||| | | ||||| || |||||||||||| ||||||||| || |||| ||| |
Sbjct: 177488 tgttgagaggctgatatttaacatgtggtaggcaacgagacataatcgatagaagcgata 177429

                                                                          
Query: 85     caactagcatgacattgatagtaatggtatctagggaaatggttattttgccagagatcc 144
               |||||||||| || ||||||||||||||||| |||||||||| || ||||| |||||||
Sbjct: 177428 aaactagcatggcaatgatagtaatggtatctggggaaatggtcatcttgcctgagatcc 177369

                                                                          
Query: 145    cacttgnnnnnnngaacgaatccgtgaatcagacgaaccgacgtagtcgaacggatcctt 204
              | ||||       ||| |  ||||||||  | ||||||||||||||||||| || |||| 
Sbjct: 177368 cgcttg-gaagaagaatgtctccgtgaagaacacgaaccgacgtagtcgaatgggtcctc 177310

                                
Query: 205    acattccgacacgcttgc 222
              ||| ||||||||||||||
Sbjct: 177309 aca-tccgacacgcttgc 177293

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>gb|AF509775.1| Hordeum vulgare subsp. vulgare isolate RSB409A Rpg1 region, genomic
            sequence
          Length = 7321

 Score =  129 bits (65), Expect = 1e-26
 Identities = 181/219 (82%), Gaps = 2/219 (0%)
 Strand = Plus / Minus

                                                                        
Query: 5    aggttgaaggtttt-atgacaatgttgagaggtttacatttagcaggtggtaggcaacta 63
            |||||||| ||||| ||| |||||||| |||| | | ||||| || |||||||||||| |
Sbjct: 6226 aggttgaatgttttgatggcaatgttgggaggctgatatttaacatgtggtaggcaacga 6167

                                                                        
Query: 64   gacataatgaaagaaacgagacaactagcatgacattgatagtaatggtatctagggaaa 123
            ||||||  || |||| ||||||||||| |||| || ||||||||||| ||||  ||||||
Sbjct: 6166 gacatagcgatagaagcgagacaactaacatggcaatgatagtaatgatatcgggggaaa 6107

                                                                        
Query: 124  tggttattttgccagagatcccacttgnnnnnnngaacgaatccgtgaatcagacgaacc 183
            |||| || || || |||||||  ||||       ||||||||||||||| ||||||||||
Sbjct: 6106 tggtcatctttcctgagatcctgcttggaagaa-gaacgaatccgtgaagcagacgaacc 6048

                                                   
Query: 184  gacgtagtcgaacggatccttacattccgacacgcttgc 222
             |||||| ||||||| |||| ||||||||||||||||||
Sbjct: 6047 aacgtagccgaacggttcctcacattccgacacgcttgc 6009

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>gb|AF509774.1| Hordeum vulgare subsp. vulgare isolate RSB347 Rpg1 region, genomic
           sequence
          Length = 3124

 Score =  129 bits (65), Expect = 1e-26
 Identities = 181/219 (82%), Gaps = 2/219 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   aggttgaaggtttt-atgacaatgttgagaggtttacatttagcaggtggtaggcaacta 63
           |||||||| ||||| ||| |||||||| |||| | | ||||| || |||||||||||| |
Sbjct: 997 aggttgaatgttttgatggcaatgttgggaggctgatatttaacatgtggtaggcaacga 938

                                                                       
Query: 64  gacataatgaaagaaacgagacaactagcatgacattgatagtaatggtatctagggaaa 123
           ||||||  || |||| ||||||||||| |||| || ||||||||||| ||||  ||||||
Sbjct: 937 gacatagcgatagaagcgagacaactaacatggcaatgatagtaatgatatcgggggaaa 878

                                                                       
Query: 124 tggttattttgccagagatcccacttgnnnnnnngaacgaatccgtgaatcagacgaacc 183
           |||| || || || |||||||  ||||       ||||||||||||||| ||||||||||
Sbjct: 877 tggtcatctttcctgagatcctgcttggaagaa-gaacgaatccgtgaagcagacgaacc 819

                                                  
Query: 184 gacgtagtcgaacggatccttacattccgacacgcttgc 222
            |||||| ||||||| |||| ||||||||||||||||||
Sbjct: 818 aacgtagccgaacggttcctcacattccgacacgcttgc 780

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>gb|AY643844.1|AY643842S3 Hordeum vulgare subsp. vulgare clones BAC 799C8 and 122A5 hardness
            locus region
          Length = 160897

 Score =  127 bits (64), Expect = 6e-26
 Identities = 187/226 (82%), Gaps = 3/226 (1%)
 Strand = Plus / Plus

                                                                        
Query: 5    aggttgaaggttttatgacaatgttgagaggtttacatttagcaggtggtaggcaactag 64
            ||||||||||||| |||||| |||||||||| | | ||||| || |||||||||||| ||
Sbjct: 4727 aggttgaaggtttcatgacattgttgagaggctgaaatttaacatgtggtaggcaacaag 4786

                                                                        
Query: 65   acataat-gaaagaaacgagacaactagcatgacattgatagtaatggtatctagggaaa 123
            ||||||| || |||| ||| |  ||||||||| |  ||||||||||||||||| ||||||
Sbjct: 4787 acataatcgatagaagcgataatactagcatggcgatgatagtaatggtatctggggaaa 4846

                                                                        
Query: 124  tggttattttgccagagatcccacttgnnnnnnngaacgaatccgtgaatcagacgaacc 183
            || |  | ||||| |||||||| ||||       ||| |  |||||||| ||||||||||
Sbjct: 4847 tgatcctcttgcctgagatcccgcttg-gaagaagaatgcctccgtgaagcagacgaacc 4905

                                                          
Query: 184  gacgtagtcgaacggatccttacattccgacacgcttgcagaactc 229
            ||||||||||||||| |||| ||| |||||||||||||| ||||||
Sbjct: 4906 gacgtagtcgaacgggtcctcaca-tccgacacgcttgcggaactc 4950

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>emb|Y14573.1|HVCH4H Hordeum vulgare DNA for chromosome 4H
          Length = 59748

 Score =  127 bits (64), Expect = 6e-26
 Identities = 186/226 (82%), Gaps = 2/226 (0%)
 Strand = Plus / Plus

                                                                         
Query: 5     aggttgaaggttttatgacaatgttgagaggtttacatttagcaggtggtaggcaactag 64
             ||||||||||||| ||| ||  ||||||||| | | ||||| || |||||||||||| ||
Sbjct: 38704 aggttgaaggtttcatggcatcgttgagaggctgatatttaacaagtggtaggcaacgag 38763

                                                                         
Query: 65    acataat-gaaagaaacgagacaactagcatgacattgatagtaatggtatctagggaaa 123
             ||||||| || || | ||| | |||||||||| || ||||||||||||||||| ||||||
Sbjct: 38764 acataatcgacagcatcgaaataactagcatggcaatgatagtaatggtatctggggaaa 38823

                                                                         
Query: 124   tggttattttgccagagatcccacttgnnnnnnngaacgaatccgtgaatcagacgaacc 183
             || | || ||||| |||||||| ||||       ||| |  |||||||| ||||||||| 
Sbjct: 38824 tgatcatcttgcctgagatcccgcttg-gaagaagaatgcctccgtgaagcagacgaact 38882

                                                           
Query: 184   gacgtagtcgaacggatccttacattccgacacgcttgcagaactc 229
             ||||||||||||||| |||| ||| |||||||||||||| ||||||
Sbjct: 38883 gacgtagtcgaacgggtcctcacaatccgacacgcttgcggaactc 38928

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>gb|AF453665.1| Hordeum vulgare isolate HV Sukkula retrotransposon, partial sequence
          Length = 7674

 Score =  119 bits (60), Expect = 1e-23
 Identities = 186/226 (82%), Gaps = 3/226 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    aggttgaaggttttatgacaatgttgagaggtttacatttagcaggtggtaggcaactag 64
            ||||||| ||||| ||| || |||||||||| | | ||||| ||||||||||||||| ||
Sbjct: 2786 aggttgagggtttcatggcattgttgagaggctgatatttaacaggtggtaggcaacgag 2727

                                                                        
Query: 65   acata-atgaaagaaacgagacaactagcatgacattgatagtaatggtatctagggaaa 123
            ||||| | || |||| ||| | |||||||||| || ||||||||||||||||| ||||||
Sbjct: 2726 acatagacgatagaagcgata-aactagcatggcaatgatagtaatggtatctggggaaa 2668

                                                                        
Query: 124  tggttattttgccagagatcccacttgnnnnnnngaacgaatccgtgaatcagacgaacc 183
            || | || ||||| |||||||| ||||       ||| |  |||||||| ||||||||||
Sbjct: 2667 tgatcatcttgcctgagatcccgcttg-gaagaagaatgcctccgtgaagcagacgaacc 2609

                                                          
Query: 184  gacgtagtcgaacggatccttacattccgacacgcttgcagaactc 229
            ||||||||||||||  |||| ||| |||| ||||||||| ||||||
Sbjct: 2608 gacgtagtcgaacgagtcctcacaatccggcacgcttgcggaactc 2563

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>gb|AY054377.1| Hordeum vulgare clone LTR-INS1 Sukkula retrotransposon long terminal
            repeat, complete sequence
          Length = 7575

 Score =  119 bits (60), Expect = 1e-23
 Identities = 186/226 (82%), Gaps = 3/226 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    aggttgaaggttttatgacaatgttgagaggtttacatttagcaggtggtaggcaactag 64
            ||||||| ||||| ||| || |||||||||| | | ||||| ||||||||||||||| ||
Sbjct: 2786 aggttgagggtttcatggcattgttgagaggctgatatttaacaggtggtaggcaacgag 2727

                                                                        
Query: 65   acata-atgaaagaaacgagacaactagcatgacattgatagtaatggtatctagggaaa 123
            ||||| | || |||| ||| | |||||||||| || ||||||||||||||||| ||||||
Sbjct: 2726 acatagacgatagaagcgata-aactagcatggcaatgatagtaatggtatctggggaaa 2668

                                                                        
Query: 124  tggttattttgccagagatcccacttgnnnnnnngaacgaatccgtgaatcagacgaacc 183
            || | || ||||| |||||||| ||||       ||| |  |||||||| ||||||||||
Sbjct: 2667 tgatcatcttgcctgagatcccgcttg-gaagaagaatgcctccgtgaagcagacgaacc 2609

                                                          
Query: 184  gacgtagtcgaacggatccttacattccgacacgcttgcagaactc 229
            ||||||||||||||  |||| ||| |||| ||||||||| ||||||
Sbjct: 2608 gacgtagtcgaacgagtcctcacaatccggcacgcttgcggaactc 2563

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>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial
            and complete sequences
          Length = 11820

 Score =  119 bits (60), Expect = 1e-23
 Identities = 186/226 (82%), Gaps = 3/226 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    aggttgaaggttttatgacaatgttgagaggtttacatttagcaggtggtaggcaactag 64
            ||||||| ||||| ||| || |||||||||| | | ||||| ||||||||||||||| ||
Sbjct: 2786 aggttgagggtttcatggcattgttgagaggctgatatttaacaggtggtaggcaacgag 2727

                                                                        
Query: 65   acata-atgaaagaaacgagacaactagcatgacattgatagtaatggtatctagggaaa 123
            ||||| | || |||| ||| | |||||||||| || ||||||||||||||||| ||||||
Sbjct: 2726 acatagacgatagaagcgata-aactagcatggcaatgatagtaatggtatctggggaaa 2668

                                                                        
Query: 124  tggttattttgccagagatcccacttgnnnnnnngaacgaatccgtgaatcagacgaacc 183
            || | || ||||| |||||||| ||||       ||| |  |||||||| ||||||||||
Sbjct: 2667 tgatcatcttgcctgagatcccgcttg-gaagaagaatgcctccgtgaagcagacgaacc 2609

                                                          
Query: 184  gacgtagtcgaacggatccttacattccgacacgcttgcagaactc 229
            ||||||||||||||  |||| ||| |||| ||||||||| ||||||
Sbjct: 2608 gacgtagtcgaacgagtcctcacaatccggcacgcttgcggaactc 2563



 Score = 63.9 bits (32), Expect = 7e-07
 Identities = 122/148 (82%), Gaps = 3/148 (2%)
 Strand = Plus / Minus

                                                                         
Query: 5     aggttgaaggtttt-atgacaatgttgagaggtttacatttagcaggtggtaggcaacta 63
             |||||||||||| | ||| || |||||||||| | | ||||| || |||||||| ||| |
Sbjct: 10318 aggttgaaggttatcatggcattgttgagaggctgatatttaacaagtggtaggtaacga 10259

                                                                         
Query: 64    gacataat-gaaagaaacgagacaactagcatgacattgatagtaatggtatctagggaa 122
             |||||||| || |||| ||  | |||||||||| || ||||||||||||||||| |||||
Sbjct: 10258 gacataatcgatagaagcggca-aactagcatggcaatgatagtaatggtatctggggaa 10200

                                         
Query: 123   atggttattttgccagagatcccacttg 150
             ||| | || ||||  |||||||| ||||
Sbjct: 10199 atgatcatcttgcgtgagatcccgcttg 10172



 Score = 48.1 bits (24), Expect = 0.041
 Identities = 40/44 (90%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 186   cgtagtcgaacggatccttacattccgacacgcttgcagaactc 229
             ||||||||||||| |||| || ||||||||||||||| ||||||
Sbjct: 10137 cgtagtcgaacgggtcctcac-ttccgacacgcttgcggaactc 10095

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>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
            intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
            complete cds
          Length = 65979

 Score =  119 bits (60), Expect = 1e-23
 Identities = 186/226 (82%), Gaps = 3/226 (1%)
 Strand = Plus / Minus

                                                                        
Query: 5    aggttgaaggttttatgacaatgttgagaggtttacatttagcaggtggtaggcaactag 64
            ||||||||||||| ||| || || ||||||| | | ||||| || |||||||||||| ||
Sbjct: 9670 aggttgaaggtttcatggcattggtgagaggctgatatttaacatgtggtaggcaacgag 9611

                                                                        
Query: 65   acataat-gaaagaaacgagacaactagcatgacattgatagtaatggtatctagggaaa 123
            ||||||  || || |||   | |||||||||| || ||||||||||||||||| ||||||
Sbjct: 9610 acataaacgatagcaacagtaaaactagcatggcaatgatagtaatggtatctggggaaa 9551

                                                                        
Query: 124  tggttattttgccagagatcccacttgnnnnnnngaacgaatccgtgaatcagacgaacc 183
            || | || ||||| |||||||| ||||       ||| |  |||||||| ||||||||||
Sbjct: 9550 tgatcatcttgcctgagatcccgcttggaagag-gaatgcctccgtgaagcagacgaacc 9492

                                                          
Query: 184  gacgtagtcgaacggatccttacattccgacacgcttgcagaactc 229
            ||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct: 9491 gacgtagtcgaacgggtcctcaca-tccgacacgcttgcagaactc 9447

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>gb|AY485643.1| Hordeum vulgare subsp. vulgare BAC 615K1, complete sequence
          Length = 114996

 Score = 99.6 bits (50), Expect = 1e-17
 Identities = 175/216 (81%), Gaps = 2/216 (0%)
 Strand = Plus / Plus

                                                                          
Query: 5      aggttgaaggttttatgacaatgttgagaggtttacatttagcaggtggtaggcaactag 64
              ||||||| ||||| ||| || |||||||||| |   ||||| || |||||||||||| ||
Sbjct: 104208 aggttgagggtttcatggcattgttgagaggctggtatttaacatgtggtaggcaacgag 104267

                                                                          
Query: 65     acataatgaaagaaac-gagacaactagcatgacattgatagtaatggtatctagggaaa 123
              |||||| || ||| || |  | |||||||||| || |||||||||||||||||||| |||
Sbjct: 104268 acataacgatagagacggtaaaaactagcatggcaatgatagtaatggtatctaggaaaa 104327

                                                                          
Query: 124    tggttattttgccagagatcccacttgnnnnnnngaacgaatccgtgaatcagacgaacc 183
              || | || ||||| |||||||| | ||       |||| | |||||||| ||||||||||
Sbjct: 104328 tgatcatcttgcctgagatcccgcctg-gaagaagaacaactccgtgaagcagacgaacc 104386

                                                  
Query: 184    gacgtagtcgaacggatccttacattccgacacgct 219
              ||||||||||||||| |||| ||| |||| ||||||
Sbjct: 104387 gacgtagtcgaacgggtcctcacaatccggcacgct 104422

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>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score = 97.6 bits (49), Expect = 5e-17
 Identities = 159/195 (81%), Gaps = 2/195 (1%)
 Strand = Plus / Plus

                                                                         
Query: 26    tgttgagaggtttacatttagcaggtggtaggcaactagacataat-gaaagaaacgaga 84
             |||||||||| | | ||||| || |||||||||||| ||||||||| || |  | ||| |
Sbjct: 69577 tgttgagaggctgatatttaacaagtggtaggcaacgagacataatcgataacatcgaaa 69636

                                                                         
Query: 85    caactagcatgacattgatagtaatggtatctagggaaatggttattttgccagagatcc 144
              |||||||||| || ||||||||||||||||| |||||||| | || ||||| |||||||
Sbjct: 69637 taactagcatggcaatgatagtaatggtatctggggaaatgatcatcttgcctgagatcc 69696

                                                                         
Query: 145   cacttgnnnnnnngaacgaatccgtgaatcagacgaaccgacgtagtcgaacggatcctt 204
             | ||||       ||| |  |||||||| ||||||||||||||||||||||||| |||| 
Sbjct: 69697 cgcttggaagaa-gaatgcctccgtgaagcagacgaaccgacgtagtcgaacgggtcctc 69755

                            
Query: 205   acattccgacacgct 219
             ||| |||| ||||||
Sbjct: 69756 acaatccggcacgct 69770

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>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7731

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 117/140 (83%), Gaps = 2/140 (1%)
 Strand = Plus / Minus

                                                                        
Query: 75   agaaacgagacaactagcatgacattgatagtaatggtatctagggaaat-ggttatttt 133
            ||||||||||||||||||||| || |||||||||||||||| |||||||| ||| || ||
Sbjct: 2849 agaaacgagacaactagcatggcaatgatagtaatggtatccagggaaatgggtcatctt 2790

                                                                        
Query: 134  gccagagatcccacttgnnnnnnngaacgaatccgtgaatcagacgaaccgacgtagtcg 193
            ||| |||||||| ||||       |||||||||||||||  |||||| || || ||||||
Sbjct: 2789 gcctgagatcccgcttg-gaagaagaacgaatccgtgaagaagacgagccaacatagtcg 2731

                                
Query: 194  aacggatccttacattccga 213
            |||| ||||| ||| |||||
Sbjct: 2730 aacgaatcctcacactccga 2711

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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 102/119 (85%), Gaps = 2/119 (1%)
 Strand = Plus / Plus

                                                                         
Query: 27    gttgagaggtttacatttagcaggtggtaggcaactagacataat-gaaagaaacgagac 85
             ||||||||| | ||||||| ||||||||||||||| ||||||||| || |||| ||| | 
Sbjct: 66280 gttgagaggctgacattta-caggtggtaggcaacgagacataatcgatagaagcgataa 66338

                                                                        
Query: 86    aactagcatgacattgatagtaatggtatctagggaaatggttattttgccagagatcc 144
              ||||||||| || ||||||||||| ||||| |||||||||| || ||||| |||||||
Sbjct: 66339 cactagcatggcaatgatagtaatgatatctggggaaatggtcatcttgcctgagatcc 66397



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 60/65 (92%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                         
Query: 165   tccgtgaatcagacgaaccgacgtagtcgaacggatccttacattccgacacgcttgcag 224
             |||||||| ||||||||||||||||||||||||| |||| ||| |||||||||||||| |
Sbjct: 66417 tccgtgaagcagacgaaccgacgtagtcgaacgggtcctcaca-tccgacacgcttgcgg 66475

                  
Query: 225   aactc 229
             |||||
Sbjct: 66476 aactc 66480

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>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7586

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 107/130 (82%), Gaps = 1/130 (0%)
 Strand = Plus / Minus

                                                                        
Query: 84   acaactagcatgacattgatagtaatggtatctagggaaatggttattttgccagagatc 143
            |||||||||||| || |||||||||||||||| ||||||||| | || ||||| ||||||
Sbjct: 2637 acaactagcatggcaatgatagtaatggtatccagggaaatgatcatcttgcccgagatc 2578

                                                                        
Query: 144  ccacttgnnnnnnngaacgaatccgtgaatcagacgaaccgacgtagtcgaacggatcct 203
            || ||||       ||||||| |||||||  | ||||||| ||||||||||||| |||||
Sbjct: 2577 ccgcttg-gaagaagaacgaaaccgtgaagtaaacgaaccaacgtagtcgaacgaatcct 2519

                      
Query: 204  tacattccga 213
             ||| |||||
Sbjct: 2518 cacactccga 2509

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>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
             sequence
          Length = 113510

 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                         
Query: 86    aactagcatgacattgatagtaatggtatctagggaaatggttattttgccagagatccc 145
             |||||||||| || ||||||||||||||||| |||||||| | || ||||| ||||||||
Sbjct: 17868 aactagcatggcaatgatagtaatggtatctggggaaatgatcatcttgcctgagatccc 17927

                  
Query: 146   acttg 150
              ||||
Sbjct: 17928 gcttg 17932



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 167   cgtgaatcagacgaaccgacgtagtcgaacggatccttacattccgacacgct 219
             |||||| | ||||||||||||||||||||||| |||| ||| |||| ||||||
Sbjct: 17948 cgtgaagctgacgaaccgacgtagtcgaacgggtcctcacaatccggcacgct 18000

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>gb|AC152076.4| Mus musculus BAC clone RP23-326O10 from chromosome 18, complete sequence
          Length = 215816

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 566    agaggaggaaggagagcaggaaggaga 592
              |||||||||||||||| ||||||||||
Sbjct: 182549 agaggaggaaggagagaaggaaggaga 182575

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>gb|AC136513.2| Mus musculus BAC clone RP23-477N9 from chromosome 5, complete sequence
          Length = 188517

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 566    agaggaggaaggagagcaggaaggaga 592
              |||||||||||||||| ||||||||||
Sbjct: 113869 agaggaggaaggagaggaggaaggaga 113843

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>gb|AC124578.4| Mus musculus BAC clone RP23-166C2 from 18, complete sequence
          Length = 213229

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 566    agaggaggaaggagagcaggaaggaga 592
              |||||||||||||||| ||||||||||
Sbjct: 211259 agaggaggaaggagagaaggaaggaga 211233

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>ref|XM_505065.1| Yarrowia lipolytica CLIB122, YALI0F06138g predicted mRNA
          Length = 1431

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 566 agaggaggaaggagagcaggaaggaga 592
           |||| ||||||||||||||||||||||
Sbjct: 954 agagcaggaaggagagcaggaaggaga 980



 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 571 aggaaggagagcaggaaggaga 592
           ||||||||||||||||||||||
Sbjct: 947 aggaaggagagcaggaaggaga 968

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>emb|AL669941.12| Mouse DNA sequence from clone RP23-288B4 on chromosome 11 no genes,
             complete sequence
          Length = 216199

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 566   agaggaggaaggagagcaggaaggaga 592
             |||||||||||||||| ||||||||||
Sbjct: 61203 agaggaggaaggagaggaggaaggaga 61229

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>dbj|AP002760.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-795E18, complete
              sequence
          Length = 211673

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 566    agaggaggaaggagagcaggaaggaga 592
              |||||||||||||||| ||||||||||
Sbjct: 134006 agaggaggaaggagaggaggaaggaga 134032

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>emb|CR382132.1| Yarrowia lipolytica chromosome F of strain CLIB122 of Yarrowia lipolytica
          Length = 4003362

 Score = 46.1 bits (23), Expect = 0.16
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 566    agaggaggaaggagagcaggaaggaga 592
              |||| ||||||||||||||||||||||
Sbjct: 920098 agagcaggaaggagagcaggaaggaga 920072



 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 571    aggaaggagagcaggaaggaga 592
              ||||||||||||||||||||||
Sbjct: 920105 aggaaggagagcaggaaggaga 920084

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>gb|AC165948.2| Mus musculus BAC clone RP24-430M9 from chromosome 17, complete sequence
          Length = 176267

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 567   gaggaggaaggagagcaggaag 588
             ||||||||||||||||||||||
Sbjct: 80327 gaggaggaaggagagcaggaag 80306

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>gb|AF326781.1| Triticum monococcum actin (ACT-1) gene, partial cds; putative chromosome
              condensation factor (CCF), putative resistance protein
              (RGA-2), putative resistance protein (RGA2) and putative
              nodulin-like-like protein (NLL) gene, complete cds; and
              retrotransposons Josephine, Angela-2, Angela-4, Heidi,
              Greti, Angela-3, Fatima, Erika-1, Angela-6, Angela-5,
              Barbara, Isabelle, Erika-2, and Claudia
          Length = 211009

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                            
Query: 158    gaacgaatccgtgaatcagacgaaccgacgtagtcgaacggatcct 203
              |||||| ||| ||||  |||| ||| ||||||||||||||||||||
Sbjct: 194925 gaacgagtccatgaagtagacaaacggacgtagtcgaacggatcct 194970

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>gb|AC163346.3| Mus musculus BAC clone RP23-370A2 from chromosome 6, complete
            sequence
          Length = 173936

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 567  gaggaggaaggagagcaggaaggaga 592
            ||||||||||||||| ||||||||||
Sbjct: 4166 gaggaggaaggagaggaggaaggaga 4191

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>gb|AC122050.3| Mus musculus BAC clone RP24-457L7 from chromosome 6, complete sequence
          Length = 179078

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 567   gaggaggaaggagagcaggaaggaga 592
             ||||||||||||||| ||||||||||
Sbjct: 55494 gaggaggaaggagaggaggaaggaga 55469

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>gb|AC009852.9| Homo sapiens chromosome 15 clone RP11-402F9 map 15q15, complete sequence
          Length = 178660

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 566    agaggaggaaggagagcaggaa 587
              ||||||||||||||||||||||
Sbjct: 108706 agaggaggaaggagagcaggaa 108727

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>gb|AC158369.4| Pan troglodytes BAC clone CH251-554F11 from chromosome unknown,
             complete sequence
          Length = 201901

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 566   agaggaggaaggagagcaggaa 587
             ||||||||||||||||||||||
Sbjct: 19270 agaggaggaaggagagcaggaa 19291

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>gb|AC078797.20| Homo sapiens 3 BAC RP11-125E8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166704

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 554   agagcagtgactagaggaggaaggag 579
             |||||||||||| |||||||||||||
Sbjct: 61246 agagcagtgacttgaggaggaaggag 61271

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>gb|AC008000.7|AC008000 Homo sapiens 3q25-26 BAC CITB-371O18 (California Institute of
            Technology BAC Library) complete sequence
          Length = 131105

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 570  gaggaaggagagcaggaaggag 591
            ||||||||||||||||||||||
Sbjct: 9879 gaggaaggagagcaggaaggag 9900

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>gb|AF004836.1|AF004836 Homo sapiens eukaryotic initiation factor-4 gamma (eIF-4G) gene,
           partial cds
          Length = 1224

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 554 agagcagtgactagaggaggaaggag 579
           |||||||||||| |||||||||||||
Sbjct: 106 agagcagtgacttgaggaggaaggag 131

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>gb|AC165951.3| Mus musculus BAC clone RP24-137B13 from chromosome 17, complete
             sequence
          Length = 209191

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 567   gaggaggaaggagagcaggaag 588
             ||||||||||||||||||||||
Sbjct: 51186 gaggaggaaggagagcaggaag 51207

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>gb|AC134555.4| Mus musculus BAC clone RP24-320K4 from 17, complete sequence
          Length = 174388

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 567    gaggaggaaggagagcaggaaggaga 592
              ||||||||||||||| ||||||||||
Sbjct: 132218 gaggaggaaggagaggaggaaggaga 132193

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>gb|AC018839.5| Homo sapiens chromosome 3 clone RP11-593J10 map 3p, complete sequence
          Length = 182288

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 570   gaggaaggagagcaggaaggag 591
             ||||||||||||||||||||||
Sbjct: 75093 gaggaaggagagcaggaaggag 75072

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>gb|AC090841.2| Homo sapiens chromosome 3 clone RP11-1082A18 map 3p, complete sequence
          Length = 217778

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 570    gaggaaggagagcaggaaggag 591
              ||||||||||||||||||||||
Sbjct: 206819 gaggaaggagagcaggaaggag 206798

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>gb|AC160105.2| Mus musculus BAC clone RP24-353L12 from chromosome 13, complete sequence
          Length = 138509

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 567    gaggaggaaggagagcaggaaggag 591
              |||||||||| ||||||||||||||
Sbjct: 131079 gaggaggaagaagagcaggaaggag 131055

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>gb|AC109162.12| Mus musculus chromosome 7, clone RP24-177G14, complete sequence
          Length = 176990

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 579   gagcaggaaggagatggagac 599
             |||||||||||||||||||||
Sbjct: 88686 gagcaggaaggagatggagac 88706

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>gb|AC117214.3| Mus musculus BAC clone RP23-307B15 from chromosome 9, complete sequence
          Length = 219833

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 37/41 (90%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                       
Query: 567    gaggaggaaggagagcaggaaggagatggagacgggagagg 607
              ||||||||||||||| |||| ||||| ||||| ||||||||
Sbjct: 148173 gaggaggaaggagaggaggagggaga-ggagaagggagagg 148212

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>gb|AC098738.2| Mus musculus BAC clone RP23-122F7 from 8, complete sequence
          Length = 216974

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 37/41 (90%), Gaps = 1/41 (2%)
 Strand = Plus / Plus

                                                       
Query: 567    gaggaggaaggagagcaggaaggagatggagacgggagagg 607
              ||||||||||| ||| |||||||||||| ||| ||||||||
Sbjct: 139272 gaggaggaaggggaggaggaaggagatgaaga-gggagagg 139311

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>ref|XM_786014.1| PREDICTED: Strongylocentrotus purpuratus similar to swelling
           dependent chloride channel (LOC586223), mRNA
          Length = 501

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 567 gaggaggaaggagagcaggaaggag 591
           ||||||||||||||| |||||||||
Sbjct: 367 gaggaggaaggagaggaggaaggag 391

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>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence
          Length = 2726152

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 656     gaagcagcagatcgagcagga 676
               |||||||||||||||||||||
Sbjct: 1908436 gaagcagcagatcgagcagga 1908416

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>emb|AL049868.20|HSJ927M24 Human DNA sequence from clone RP5-927M24 on chromosome 20 Contains a
             novel gene (LOC128439), the 5' end of the gene for a novel
             protein (KIAA1219), the RPS3P2 gene for ribosomal protein
             S3 pseudogene 2 and a CpG island, complete sequence
          Length = 121922

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 568   aggaggaaggagagcaggaag 588
             |||||||||||||||||||||
Sbjct: 82675 aggaggaaggagagcaggaag 82655

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>gb|AC164163.2| Mus musculus BAC clone RP23-243L21 from chromosome 16, complete sequence
          Length = 178656

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 568    aggaggaaggagagcaggaaggaga 592
              |||||||||||||| ||||||||||
Sbjct: 119770 aggaggaaggagaggaggaaggaga 119746

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>gb|AC103996.7| Homo sapiens chromosome 15, clone RP11-76E17, complete sequence
          Length = 165649

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 30/32 (93%), Gaps = 2/32 (6%)
 Strand = Plus / Plus

                                             
Query: 567   gaggaggaaggagagcaggaaggagatggaga 598
             ||||||||||||||  ||||||||||||||||
Sbjct: 19701 gaggaggaaggaga--aggaaggagatggaga 19730

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>dbj|AK156772.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched
           library, clone:F830048N02 product:unclassifiable, full
           insert sequence
          Length = 3647

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 579 gagcaggaaggagatggagac 599
           |||||||||||||||||||||
Sbjct: 746 gagcaggaaggagatggagac 766

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>gb|AC162801.2| Mus musculus BAC clone RP24-65E6 from chromosome 12, complete sequence
          Length = 225198

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 572    ggaaggagagcaggaaggaga 592
              |||||||||||||||||||||
Sbjct: 165341 ggaaggagagcaggaaggaga 165321

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>emb|BX890578.6| Mouse DNA sequence from clone RP23-72P20 on chromosome X, complete
              sequence
          Length = 161519

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 587    aggagatggagacgggagagg 607
              |||||||||||||||||||||
Sbjct: 132574 aggagatggagacgggagagg 132594

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>gb|AC004616.1| Homo sapiens X BAC GSHB-536K7 (Genome Systems Human BAC library)
             complete sequence
          Length = 149752

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 571   aggaaggagagcaggaaggag 591
             |||||||||||||||||||||
Sbjct: 71032 aggaaggagagcaggaaggag 71052

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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 659     gcagcagatcgagcaggagga 679
               |||||||||||||||||||||
Sbjct: 4300867 gcagcagatcgagcaggagga 4300887

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>gb|AC154502.2| Mus musculus BAC clone RP24-87I20 from chromosome 13, complete sequence
          Length = 183319

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 567    gaggaggaaggagagcaggaaggag 591
              |||||||||| ||||||||||||||
Sbjct: 140694 gaggaggaagaagagcaggaaggag 140718



 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 566    agaggaggaaggagagcaggaagga 590
              |||||||||||||||| ||||||||
Sbjct: 129921 agaggaggaaggagaggaggaagga 129897

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>emb|CT030235.12| Mouse DNA sequence from clone RP23-240F19 on chromosome 16, complete
              sequence
          Length = 236028

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 568    aggaggaaggagagcaggaaggaga 592
              |||||||||||||| ||||||||||
Sbjct: 166793 aggaggaaggagaggaggaaggaga 166817

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>emb|AL672069.10| Mouse DNA sequence from clone RP23-343O22 on chromosome X, complete
              sequence
          Length = 161147

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 587    aggagatggagacgggagagg 607
              |||||||||||||||||||||
Sbjct: 132202 aggagatggagacgggagagg 132222


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,862,906
Number of Sequences: 3902068
Number of extensions: 5862906
Number of successful extensions: 130105
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 129779
Number of HSP's gapped (non-prelim): 311
length of query: 737
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 714
effective length of database: 17,143,297,704
effective search space: 12240314560656
effective search space used: 12240314560656
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)

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full-length cDNA and EST

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BLAST Search Result