ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal34d07 |
|---|---|
| Clone Library Name | barley_pub |
>VA0D2_ARATH (Q9LHA4) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) Length = 351 Score = 159 bits (403), Expect = 4e-39 Identities = 75/86 (87%), Positives = 83/86 (96%) Frame = -2 Query: 540 GVMXKYPPYQSIFAKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEI 361 GVM KYPPYQ+IF+K+SYGESQMLDKAFYEEEV+RL L+FEQQFHYAVFFAYMRLREQEI Sbjct: 266 GVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEI 325 Query: 360 RNLMWISECVAQNQKNRVHDSVVTIF 283 RNLMWISECVAQNQK+R+HDSVV +F Sbjct: 326 RNLMWISECVAQNQKSRIHDSVVYMF 351
>VA0D1_ARATH (Q9LJI5) Probable vacuolar ATP synthase subunit d 1 (EC 3.6.3.14)| (V-ATPase d subunit 1) (Vacuolar proton pump d subunit 1) Length = 351 Score = 159 bits (403), Expect = 4e-39 Identities = 75/86 (87%), Positives = 83/86 (96%) Frame = -2 Query: 540 GVMXKYPPYQSIFAKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEI 361 GVM KYPPYQ+IF+K+SYGESQMLDKAFYEEEV+RL L+FEQQFHYAVFFAYMRLREQEI Sbjct: 266 GVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVRRLCLAFEQQFHYAVFFAYMRLREQEI 325 Query: 360 RNLMWISECVAQNQKNRVHDSVVTIF 283 RNLMWISECVAQNQK+R+HDSVV +F Sbjct: 326 RNLMWISECVAQNQKSRIHDSVVYMF 351
>VA0D_DICDI (P54641) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa accessory protein) (DVA41) Length = 356 Score = 79.3 bits (194), Expect = 6e-15 Identities = 33/82 (40%), Positives = 57/82 (69%) Frame = -2 Query: 540 GVMXKYPPYQSIFAKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEI 361 G++ Y Y++ F+ + L+ +F+E EV R++FE Q+ Y VF+AY++LREQEI Sbjct: 273 GILEVYSTYRNFFSD-GVNNEKSLEDSFFEHEVHLNRMAFEDQYGYGVFYAYIKLREQEI 331 Query: 360 RNLMWISECVAQNQKNRVHDSV 295 RN++WI+EC++QN K +++ + Sbjct: 332 RNIVWIAECISQNMKQKMNQYI 353
>VA0D_NEUCR (P53659) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 41 kDa subunit) Length = 364 Score = 74.3 bits (181), Expect = 2e-13 Identities = 29/63 (46%), Positives = 51/63 (80%) Frame = -2 Query: 483 ESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVH 304 E + L+ FY++E++ +++F +QF YA+ +A+++LREQEIRN+ WI+EC+AQNQK R++ Sbjct: 299 EGKSLEDMFYQKEMEISKMAFTRQFTYAIVYAWVKLREQEIRNITWIAECIAQNQKERIN 358 Query: 303 DSV 295 + + Sbjct: 359 NYI 361
>VA0D_SCHPO (O13753) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 343 Score = 73.6 bits (179), Expect = 3e-13 Identities = 31/54 (57%), Positives = 45/54 (83%) Frame = -2 Query: 471 LDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNR 310 LD F E+EV+ +L+F QQFHY + +A+++LREQEIRNL WI+EC++QNQ++R Sbjct: 282 LDDHFNEKEVELNKLAFLQQFHYGIVYAFLKLREQEIRNLTWIAECISQNQRDR 335
>VA0D_PONPY (Q5R6I1) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) Length = 351 Score = 73.6 bits (179), Expect = 3e-13 Identities = 35/83 (42%), Positives = 59/83 (71%), Gaps = 2/83 (2%) Frame = -2 Query: 525 YPPYQSIF--AKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNL 352 YP Y+ +F A + G+ + D+ F+E EVK +L+F QFH+ VF+A+++L+EQE RN+ Sbjct: 271 YPEYKLLFEGAGSNPGDKTLEDR-FFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNI 329 Query: 351 MWISECVAQNQKNRVHDSVVTIF 283 +WI+EC+AQ + ++ D+ + IF Sbjct: 330 VWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_MOUSE (P51863) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (Physophilin) Length = 351 Score = 73.6 bits (179), Expect = 3e-13 Identities = 35/83 (42%), Positives = 59/83 (71%), Gaps = 2/83 (2%) Frame = -2 Query: 525 YPPYQSIF--AKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNL 352 YP Y+ +F A + G+ + D+ F+E EVK +L+F QFH+ VF+A+++L+EQE RN+ Sbjct: 271 YPEYKLLFEGAGSNPGDKTLEDR-FFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNI 329 Query: 351 MWISECVAQNQKNRVHDSVVTIF 283 +WI+EC+AQ + ++ D+ + IF Sbjct: 330 VWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_HUMAN (P61421) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 73.6 bits (179), Expect = 3e-13 Identities = 35/83 (42%), Positives = 59/83 (71%), Gaps = 2/83 (2%) Frame = -2 Query: 525 YPPYQSIF--AKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNL 352 YP Y+ +F A + G+ + D+ F+E EVK +L+F QFH+ VF+A+++L+EQE RN+ Sbjct: 271 YPEYKLLFEGAGSNPGDKTLEDR-FFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNI 329 Query: 351 MWISECVAQNQKNRVHDSVVTIF 283 +WI+EC+AQ + ++ D+ + IF Sbjct: 330 VWIAECIAQRHRAKI-DNYIPIF 351
>VA0D_BOVIN (P61420) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase 40 kDa accessory protein) (P39) (32 kDa accessory protein) Length = 351 Score = 73.6 bits (179), Expect = 3e-13 Identities = 35/83 (42%), Positives = 59/83 (71%), Gaps = 2/83 (2%) Frame = -2 Query: 525 YPPYQSIF--AKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNL 352 YP Y+ +F A + G+ + D+ F+E EVK +L+F QFH+ VF+A+++L+EQE RN+ Sbjct: 271 YPEYKLLFEGAGSNPGDKTLEDR-FFEHEVKLNKLAFLNQFHFGVFYAFVKLKEQECRNI 329 Query: 351 MWISECVAQNQKNRVHDSVVTIF 283 +WI+EC+AQ + ++ D+ + IF Sbjct: 330 VWIAECIAQRHRAKI-DNYIPIF 351
>VA0D1_DROME (Q9W4P5) Vacuolar ATP synthase subunit d 1 (EC 3.6.3.14) (V-ATPase| d subunit 1) (Vacuolar proton pump d subunit 1) (V-ATPase 39 kDa subunit 1) Length = 350 Score = 70.5 bits (171), Expect = 3e-12 Identities = 36/83 (43%), Positives = 57/83 (68%), Gaps = 2/83 (2%) Frame = -2 Query: 525 YPPYQSIF--AKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNL 352 Y Y ++F + + G+ + DK F+E EVK +F QQFH+ VF+AY++L+EQE RN+ Sbjct: 270 YAEYAALFDGSGNNPGDKTLEDK-FFEHEVKLDVYAFLQQFHFGVFYAYLKLKEQECRNI 328 Query: 351 MWISECVAQNQKNRVHDSVVTIF 283 +WI+ECVAQ + ++ D+ + IF Sbjct: 329 VWIAECVAQKHRAKI-DNYIPIF 350
>VA0D_MANSE (Q25531) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 40 kDa subunit) (M40) Length = 348 Score = 70.5 bits (171), Expect = 3e-12 Identities = 36/83 (43%), Positives = 56/83 (67%), Gaps = 2/83 (2%) Frame = -2 Query: 525 YPPYQSIF--AKISYGESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNL 352 Y Y ++F A + G+ + DK F+E EV +F QQFH+ VF++Y++L+EQE RN+ Sbjct: 268 YAEYSALFEGAGNNVGDKTLEDK-FFEHEVNLNVHAFLQQFHFGVFYSYLKLKEQECRNI 326 Query: 351 MWISECVAQNQKNRVHDSVVTIF 283 +WISECVAQ + ++ D+ + IF Sbjct: 327 VWISECVAQKHRAKI-DNYIPIF 348
>VA0D_YEAST (P32366) Vacuolar ATP synthase subunit d (EC 3.6.3.14) (V-ATPase d| subunit) (Vacuolar proton pump d subunit) (V-ATPase 39 kDa subunit) (V-ATPase subunit M39) Length = 345 Score = 62.8 bits (151), Expect = 6e-10 Identities = 26/63 (41%), Positives = 46/63 (73%) Frame = -2 Query: 483 ESQMLDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVH 304 E+ L+ FY+ E++ R +F QQF + +A+M+ +EQE+RN+ WI+EC+AQNQ+ R++ Sbjct: 280 ETGNLEDHFYQLEMELCRDAFTQQFAISTVWAWMKSKEQEVRNITWIAECIAQNQRERIN 339 Query: 303 DSV 295 + + Sbjct: 340 NYI 342
>VA0D2_DROME (Q9VCQ3) Probable vacuolar ATP synthase subunit d 2 (EC 3.6.3.14)| (V-ATPase d subunit 2) (Vacuolar proton pump d subunit 2) (V-ATPase 39 kDa subunit 2) Length = 350 Score = 59.7 bits (143), Expect = 5e-09 Identities = 22/56 (39%), Positives = 42/56 (75%) Frame = -2 Query: 471 LDKAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQEIRNLMWISECVAQNQKNRVH 304 L+ F E K+ +F QQ+H+ +F+++++L++ E+RN++WISEC+AQ Q +R++ Sbjct: 287 LEDRFLMMEAKKNVQTFLQQYHFGIFYSFIKLKQLEVRNIVWISECIAQRQTDRIN 342
>HMCT_BOMMO (P98092) Hemocytin precursor (Humoral lectin)| Length = 3133 Score = 32.7 bits (73), Expect = 0.67 Identities = 18/56 (32%), Positives = 25/56 (44%) Frame = +3 Query: 303 HGPCSSGSGQRIRRSTSSSLSPALVASCTQRKQHSGTAVRMTGAASLLPPHRKPCP 470 HG C SG+ + T S C Q ++SG +VR+T + PHR P Sbjct: 3017 HGSCDSGTIYNNQTGTHES-----ACECCQAAKYSGVSVRLTCEDGTVRPHRVATP 3067
>ZN265_HUMAN (O95218) Zinc finger protein 265 (Zinc finger, splicing)| Length = 337 Score = 30.0 bits (66), Expect = 4.3 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +3 Query: 285 RSSRRCHGPCSSGSGQRIRRSTSSSLSPALVASCTQRKQHSGTAVRMTG-AASLLPPHRK 461 RSS R P SS S R R +SSS +S +R + G+ R + + L PH K Sbjct: 212 RSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSTGALLPHEK 271
>POLG_PEMVC (Q01500) Genome polyprotein [Contains: P1 proteinase (N-terminal| protein); Helper component proteinase (EC 3.4.22.45) (HC-pro); Protein P3; 6 kDa protein 1 (6K1); Cytoplasmic inclusion protein (EC 3.6.1.-) (CI); 6 kDa protein 2 (6K2); Viral ge Length = 3068 Score = 29.6 bits (65), Expect = 5.6 Identities = 24/74 (32%), Positives = 33/74 (44%) Frame = +2 Query: 125 QIMIHYSSSSFSAA*KIGTRGITNHELIKSAIDCAIIKAGLLYSHMHSNRGRLKIVTTLS 304 Q + H S SS + A +G RG+ N LI + AII AG+ + Sbjct: 1785 QFVHHQSKSSLAKA--LGLRGVWNKSLI---VRDAIIAAGVACGG--------------A 1825 Query: 305 WTLFFWFWATHSEI 346 W L+ WF A SE+ Sbjct: 1826 WLLYTWFTAKMSEV 1839
>TUP1_YEAST (P16649) Glucose repression regulatory protein TUP1 (Flocculation| suppressor protein) (Repressor AER2) Length = 713 Score = 29.6 bits (65), Expect = 5.6 Identities = 13/34 (38%), Positives = 19/34 (55%) Frame = -2 Query: 465 KAFYEEEVKRLRLSFEQQFHYAVFFAYMRLREQE 364 K YEEE+K L+L EQ+ H + R+Q+ Sbjct: 70 KDAYEEEIKHLKLGLEQRDHQIASLTVQQQRQQQ 103
>IRAK1_HUMAN (P51617) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)| (IRAK-1) Length = 712 Score = 29.6 bits (65), Expect = 5.6 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 1/55 (1%) Frame = +3 Query: 324 SGQRIRRSTSSSLSPALVASCTQRKQHSGTAVRMTGA-ASLLPPHRKPCPTSDFP 485 S +++ S S+ LSPA S T HSG + + + ASL PP P P+S P Sbjct: 131 SPRKLPSSASTFLSPAFPGSQT----HSGPELGLVPSPASLWPPPPSPAPSSTKP 181
>OR4C6_HUMAN (Q8NH72) Olfactory receptor 4C6 (Olfactory receptor OR11-138)| Length = 309 Score = 28.9 bits (63), Expect = 9.6 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%) Frame = -2 Query: 306 HDSVVTIFNRPLLLCIWLYKRPALMMAQSIALFISS*FVIPLV-PIFYAAEKLELE 142 H +VV +F P CI+LY RP + A+ +S + P++ P+ Y E++ Sbjct: 241 HLTVVVLFFVP---CIFLYMRPVVTHPIDKAMAVSDSIITPMLNPLIYTLRNAEVK 293
>GPMI_MYCHO (Q6Y8Q8) 2,3-bisphosphoglycerate-independent phosphoglycerate| mutase (EC 5.4.2.1) (Phosphoglyceromutase) (BPG-independent PGAM) (iPGM) Length = 499 Score = 28.9 bits (63), Expect = 9.6 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 3/45 (6%) Frame = -2 Query: 516 YQSIFAKISYGESQM---LDKAFYEEEVKRLRLSFEQQFHYAVFF 391 Y+ I +KI++ E ++ L K ++K+LRL+ Q++ + FF Sbjct: 289 YEGINSKIAFKEMEVVNPLGKVLESNDIKQLRLAETQKYAHVTFF 333 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 81,387,502 Number of Sequences: 219361 Number of extensions: 1648554 Number of successful extensions: 4511 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4376 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4507 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4258037034 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
