ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbaal34d07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_192544.1| Oryza sativa (japonica cultivar-group), predic... 262 1e-66
2dbj|AK067605.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 1e-66
3gb|AY104603.1| Zea mays PCO113315 mRNA sequence 212 9e-52
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
5dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic D... 151 3e-33
6gb|AY843525.1| Ammopiptanthus mongolicus clone N10G17 cold-induc... 100 9e-18
7ref|NM_113791.2| Arabidopsis thaliana hydrogen-transporting ATP ... 98 4e-17
8gb|AY142622.1| Arabidopsis thaliana putative adenosine triphosph... 98 4e-17
9gb|AF327534.1| Arabidopsis thaliana putative adenosine triphosph... 98 4e-17
10gb|AY077656.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, com... 98 4e-17
11gb|AY039864.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, com... 98 4e-17
12gb|AF324679.2|AF324679 Arabidopsis thaliana AT3g28710 (AT3g28710... 98 4e-17
13gb|AY089082.1| Arabidopsis thaliana clone 29760 mRNA, complete s... 98 4e-17
14gb|BT012808.1| Lycopersicon esculentum clone 113828F, mRNA sequence 94 6e-16
15dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 94 6e-16
16ref|NM_113792.1| Arabidopsis thaliana hydrogen-transporting ATP ... 92 2e-15
17gb|BT000154.1| Arabidopsis thaliana Unknown protein (At3g28715) ... 92 2e-15
18gb|AY062635.1| Arabidopsis thaliana Unknown protein mRNA, comple... 92 2e-15
19gb|AF428348.1|AF428348 Arabidopsis thaliana AT3g28715/MZN14_21 m... 92 2e-15
20gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytoge... 80 9e-12
21gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete s... 72 2e-09
22gb|AC169177.4| Medicago truncatula chromosome 7 BAC clone mth2-1... 72 2e-09
23gb|AC157893.2| Medicago truncatula chromosome 7 BAC clone mth2-7... 66 1e-07
24gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome... 44 0.47
25gb|AC125226.3| Mus musculus BAC clone RP23-39D21 from 7, complet... 44 0.47
26emb|AL157897.8| Human DNA sequence from clone RP11-8D22 on chrom... 44 0.47
27emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 i... 44 0.47
28emb|AL121590.11|HSJ167O22 Human DNA sequence from clone RP1-167O... 42 1.9
29dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
30gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
31emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial se... 42 1.9
32ref|XM_527029.1| PREDICTED: Pan troglodytes protocadherin alpha ... 40 7.3
33gb|AF022647.1| Fusobacterium nucleatum plasmid pPA52, complete s... 40 7.3
34gb|AF159249.1| Fusobacterium nucleatum plasmid pFN1, complete se... 40 7.3
35gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL... 40 7.3
36ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA... 40 7.3
37ref|NM_031410.1| Homo sapiens protocadherin alpha 1 (PCDHA1), tr... 40 7.3
38ref|NM_018900.2| Homo sapiens protocadherin alpha 1 (PCDHA1), tr... 40 7.3
39gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.3
40gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome 40 7.3
41gb|AC132388.3| Mus musculus BAC clone RP23-443H3 from chromosome... 40 7.3
42gb|AC072028.14| Homo sapiens 3 BAC RP11-190C21 (Roswell Park Can... 40 7.3
43gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome... 40 7.3
44ref|XM_648131.1| Entamoeba histolytica HM-1:IMSS conserved hypot... 40 7.3
45emb|Z82899.2|HS181N1 Human DNA sequence from clone RP1-181N1 on ... 40 7.3
46emb|AL359920.15| Human DNA sequence from clone RP11-359P14 on ch... 40 7.3
47gb|AC021026.20| Homo sapiens 3 BAC RP11-85A3 (Roswell Park Cance... 40 7.3
48gb|AC009779.18| Homo sapiens 12 BAC RP11-644F5 (Roswell Park Can... 40 7.3
49gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, compl... 40 7.3
50gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete ... 40 7.3
51gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome 40 7.3
52gb|AC127321.4| Mus musculus BAC clone RP23-231A8 from chromosome... 40 7.3
53gb|AC008775.7| Homo sapiens chromosome 5 clone CTD-2019N2, compl... 40 7.3
54dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
55dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
56gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome... 40 7.3
57gb|AC020890.22| Homo sapiens 3 BAC RP11-79L9 (Roswell Park Cance... 40 7.3
58dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
59dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
60dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.3
61dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, ... 40 7.3
62emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, co... 40 7.3
63emb|AL935332.12| Zebrafish DNA sequence from clone DKEY-77F17 in... 40 7.3
64gb|AF152305.1|AF152305 Homo sapiens protocadherin alpha 1 (PCDH-... 40 7.3
65gb|AF152479.1|AF152479 Homo sapiens protocadherin alpha 1 short ... 40 7.3
66emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chr... 40 7.3
67gb|AC125369.4| Mus musculus BAC clone RP24-380D10 from 8, comple... 40 7.3 
>ref|NM_192544.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1056

 Score =  262 bits (132), Expect = 1e-66
 Identities = 217/246 (88%)
 Strand = Plus / Minus

                                                                        
Query: 296  acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 355
            |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 1040 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 981

                                                                        
Query: 356  ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 415
            ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 980  ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 921

                                                                        
Query: 416  tgttcgaatgacaggcgcagcctctttacttcctcctcatagaaagccttgtccaacatc 475
            ||||| ||||||| || |||||||   ||||||||||||||||| ||||| |||||||| 
Sbjct: 920  tgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggccttatccaacatt 861

                                                                        
Query: 476  tgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttntncatt 535
            || ||||||||||| || || || |||||||||| ||||||||| |||||||| | ||||
Sbjct: 860  tggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctccatt 801

                  
Query: 536  acacca 541
            ||||||
Sbjct: 800  acacca 795
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>dbj|AK067605.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111L13, full
            insert sequence
          Length = 1556

 Score =  262 bits (132), Expect = 1e-66
 Identities = 217/246 (88%)
 Strand = Plus / Minus

                                                                        
Query: 296  acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 355
            |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 1156 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 1097

                                                                        
Query: 356  ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 415
            ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 1096 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 1037

                                                                        
Query: 416  tgttcgaatgacaggcgcagcctctttacttcctcctcatagaaagccttgtccaacatc 475
            ||||| ||||||| || |||||||   ||||||||||||||||| ||||| |||||||| 
Sbjct: 1036 tgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggccttatccaacatt 977

                                                                        
Query: 476  tgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttntncatt 535
            || ||||||||||| || || || |||||||||| ||||||||| |||||||| | ||||
Sbjct: 976  tggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctccatt 917

                  
Query: 536  acacca 541
            ||||||
Sbjct: 916  acacca 911



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 220  cgattgtgccatcatcaaagcgggccttttgtacagccat 259
            ||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 1233 cgattgtgccatcatcaaacctggcattttgtacaaccat 1194
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>gb|AY104603.1| Zea mays PCO113315 mRNA sequence
          Length = 1601

 Score =  212 bits (107), Expect = 9e-52
 Identities = 213/249 (85%)
 Strand = Plus / Minus

                                                                        
Query: 293  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 352
            ||||| ||||||||||||| |  |||||||||||| || || ||||| ||||||||||||
Sbjct: 1259 acgacactgtcatggacccgggacttctggttctgagcgacacattcagagatccacatc 1200

                                                                        
Query: 353  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 412
            | |||||| ||||||||||| || ||||| ||||| || ||||||||||| |||||||||
Sbjct: 1199 aggttcctgatctcctgctcgcggagcctgatgtaagcgaagaaaacagcgtagtggaac 1140

                                                                        
Query: 413  tgctgttcgaatgacaggcgcagcctctttacttcctcctcatagaaagccttgtccaac 472
            ||||| || || |||| ||  |||||||| |||||||||||||| || ||||| ||||||
Sbjct: 1139 tgctgctcaaaggacaagcatagcctcttgacttcctcctcataaaatgccttatccaac 1080

                                                                        
Query: 473  atctgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttntnc 532
            ||||||||||| |||||||| ||| | | ||| |||||||||||||| |||||||| | |
Sbjct: 1079 atctgactttctccatatgaaatcctggaaaatatagactggtatggtgggtacttctcc 1020

                     
Query: 533  attacacca 541
            ||| |||||
Sbjct: 1019 attgcacca 1011



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 220  cgattgtgccatcatcaaagcgggccttttgtaca 254
            ||||||||||||||||||||| ||| |||||||||
Sbjct: 1330 cgattgtgccatcatcaaagcaggcattttgtaca 1296
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  151 bits (76), Expect = 3e-33
 Identities = 109/120 (90%)
 Strand = Plus / Plus

                                                                            
Query: 296      acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 355
                |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 22852025 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 22852084

                                                                            
Query: 356      ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 415
                ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 22852085 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 22852144



 Score =  119 bits (60), Expect = 1e-23
 Identities = 112/130 (86%)
 Strand = Plus / Plus

                                                                            
Query: 412      ctgctgttcgaatgacaggcgcagcctctttacttcctcctcatagaaagccttgtccaa 471
                ||||||||| ||||||| || |||||||   ||||||||||||||||| ||||| |||||
Sbjct: 22852686 ctgctgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggccttatccaa 22852745

                                                                            
Query: 472      catctgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttntn 531
                ||| || ||||||||||| || || || |||||||||| ||||||||| |||||||| | 
Sbjct: 22852746 catttggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctc 22852805

                          
Query: 532      cattacacca 541
                ||||||||||
Sbjct: 22852806 cattacacca 22852815



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                        
Query: 220      cgattgtgccatcatcaaagcgggccttttgtacagccat 259
                ||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 22851948 cgattgtgccatcatcaaacctggcattttgtacaaccat 22851987



 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 17       tacattttacattgccaaca 36
                ||||||||||||||||||||
Sbjct: 39907836 tacattttacattgccaaca 39907817
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>dbj|AP003300.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0700A11
          Length = 136321

 Score =  151 bits (76), Expect = 3e-33
 Identities = 109/120 (90%)
 Strand = Plus / Plus

                                                                         
Query: 296   acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 355
             |||||||| ||||||||||||||||| ||||| ||||| || || || ||||||||||||
Sbjct: 55582 acgctgtcgtggaccctgttcttctgattctgcgcaacacactctgatatccacatcaag 55641

                                                                         
Query: 356   ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 415
             ||||| ||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct: 55642 ttcctaatctcctgctcccgtagccttatgtaagcaaagaaaacagcatagtggaactgc 55701



 Score =  119 bits (60), Expect = 1e-23
 Identities = 112/130 (86%)
 Strand = Plus / Plus

                                                                         
Query: 412   ctgctgttcgaatgacaggcgcagcctctttacttcctcctcatagaaagccttgtccaa 471
             ||||||||| ||||||| || |||||||   ||||||||||||||||| ||||| |||||
Sbjct: 56243 ctgctgttcaaatgacaagcacagcctccgcacttcctcctcatagaaggccttatccaa 56302

                                                                         
Query: 472   catctgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttntn 531
             ||| || ||||||||||| || || || |||||||||| ||||||||| |||||||| | 
Sbjct: 56303 catttggctttccccatacgaaattttggcaaaaatagcctggtatggagggtacttctc 56362

                       
Query: 532   cattacacca 541
             ||||||||||
Sbjct: 56363 cattacacca 56372



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 36/40 (90%)
 Strand = Plus / Plus

                                                     
Query: 220   cgattgtgccatcatcaaagcgggccttttgtacagccat 259
             ||||||||||||||||||| | ||| ||||||||| ||||
Sbjct: 55505 cgattgtgccatcatcaaacctggcattttgtacaaccat 55544
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>gb|AY843525.1| Ammopiptanthus mongolicus clone N10G17 cold-induced mRNA
          Length = 453

 Score = 99.6 bits (50), Expect = 9e-18
 Identities = 140/170 (82%)
 Strand = Plus / Minus

                                                                       
Query: 299 ctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaagttc 358
           |||||||| || |||  |||||| ||||| || |||||||| || |||||||| | ||||
Sbjct: 274 ctgtcatgaactctggacttctgattctgagccacgcattctgaaatccacattaggttc 215

                                                                       
Query: 359 cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgctgt 418
           || ||||||||||| | ||||||||| || || ||||| |||||||| |||||||| || 
Sbjct: 214 ctgatctcctgctcccttagcctcatatatgcgaagaacacagcataatggaactgttgc 155

                                                             
Query: 419 tcgaatgacaggcgcagcctctttacttcctcctcatagaaagccttgtc 468
           || || | || ||  |||||||| || |||||||||||||| ||||||||
Sbjct: 154 tcaaacgccaagcaaagcctcttcacctcctcctcatagaatgccttgtc 105
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>ref|NM_113791.2| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
            mechanism / hydrogen-transporting ATPase, rotational
            mechanism AT3G28710 mRNA, complete cds
          Length = 1429

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 293  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 352
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1176 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1117

                                                                        
Query: 353  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 412
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1116 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1057

                 
Query: 413  tgctg 417
            |||||
Sbjct: 1056 tgctg 1052
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>gb|AY142622.1| Arabidopsis thaliana putative adenosine triphosphatase (At3g28710)
            mRNA, complete cds
          Length = 1087

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 293  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 352
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1043 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 984

                                                                        
Query: 353  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 412
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 983  aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 924

                 
Query: 413  tgctg 417
            |||||
Sbjct: 923  tgctg 919
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>gb|AF327534.1| Arabidopsis thaliana putative adenosine triphosphatase (At3g28710)
            mRNA, complete cds
          Length = 1421

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 293  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 352
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1159 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1100

                                                                        
Query: 353  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 412
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1099 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1040

                 
Query: 413  tgctg 417
            |||||
Sbjct: 1039 tgctg 1035
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>gb|AY077656.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, complete cds
          Length = 1056

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 293  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 352
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1043 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 984

                                                                        
Query: 353  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 412
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 983  aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 924

                 
Query: 413  tgctg 417
            |||||
Sbjct: 923  tgctg 919
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>gb|AY039864.1| Arabidopsis thaliana AT3g28710/MZN14_20 mRNA, complete cds
          Length = 1429

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 293  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 352
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1176 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1117

                                                                        
Query: 353  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 412
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1116 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1057

                 
Query: 413  tgctg 417
            |||||
Sbjct: 1056 tgctg 1052
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>gb|AF324679.2|AF324679 Arabidopsis thaliana AT3g28710 (AT3g28710/MZN14_20) mRNA, complete
            cds
          Length = 1400

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 293  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 352
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1159 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1100

                                                                        
Query: 353  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 412
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1099 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1040

                 
Query: 413  tgctg 417
            |||||
Sbjct: 1039 tgctg 1035
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>gb|AY089082.1| Arabidopsis thaliana clone 29760 mRNA, complete sequence
          Length = 1363

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 106/125 (84%)
 Strand = Plus / Minus

                                                                        
Query: 293  acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 352
            ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 1122 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 1063

                                                                        
Query: 353  aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 412
            | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 1062 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 1003

                 
Query: 413  tgctg 417
            |||||
Sbjct: 1002 tgctg 998
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>gb|BT012808.1| Lycopersicon esculentum clone 113828F, mRNA sequence
          Length = 1534

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 195/245 (79%)
 Strand = Plus / Minus

                                                                        
Query: 296  acgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatcaag 355
            |||||||||||||| ||| | || |||||||| |  || ||||| || |||||||| | |
Sbjct: 1140 acgctgtcatggactctggttttttggttctgagagacacattcagaaatccacattagg 1081

                                                                        
Query: 356  ttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 415
            |||||||||||||||||||  ||||| || || |  || || ||| ||||||||||||| 
Sbjct: 1080 ttccttatctcctgctctctcagccttatatatgagaaaaatacaccatagtggaactgt 1021

                                                                        
Query: 416  tgttcgaatgacaggcgcagcctctttacttcctcctcatagaaagccttgtccaacatc 475
            ||||| || || | ||  || |  || |||||||| ||||||||||||||||| | ||||
Sbjct: 1020 tgttcaaaagataagcaaaggcgtttcacttcctcttcatagaaagccttgtcgagcatc 961

                                                                        
Query: 476  tgactttccccatatgatatctttgcaaaaatagactggtatggggggtacttntncatt 535
            || || ||||||||||| | ||| | ||| || || || || ||||||||||| | ||| 
Sbjct: 960  tggctctccccatatgacaacttagaaaatatggattgataaggggggtacttttccatg 901

                 
Query: 536  acacc 540
            |||||
Sbjct: 900  acacc 896
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>dbj|AP000420.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MZN14
          Length = 82890

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 104/123 (84%)
 Strand = Plus / Plus

                                                                         
Query: 293   acgacgctgtcatggaccctgttcttctggttctgggcaacgcattcggagatccacatc 352
             ||||| ||||| |||| ||||  |||||||||||| ||||| ||||| || |||||||| 
Sbjct: 75724 acgacactgtcgtggatcctggacttctggttctgtgcaacacattcagatatccacata 75783

                                                                         
Query: 353   aagttccttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaac 412
             | |||||| ||||||||||||| || |||||| ||||||||||| || || || ||||||
Sbjct: 75784 aggttcctgatctcctgctctcttaacctcatatacgcaaagaataccgcgtaatggaac 75843

                
Query: 413   tgc 415
             |||
Sbjct: 75844 tgc 75846



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 86/100 (86%)
 Strand = Plus / Minus

                                                                         
Query: 316   cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 375
             |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 82881 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 82822

                                                     
Query: 376   tagcctcatgtacgcaaagaaaacagcatagtggaactgc 415
              | |||||| ||||||||||| || || || |||||||||
Sbjct: 82821 caacctcatatacgcaaagaataccgcgtaatggaactgc 82782
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>ref|NM_113792.1| Arabidopsis thaliana hydrogen-transporting ATP synthase, rotational
            mechanism / hydrogen-transporting ATPase, rotational
            mechanism AT3G28715 mRNA, complete cds
          Length = 1056

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 316  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 375
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1020 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 961

                                                      
Query: 376  tagcctcatgtacgcaaagaaaacagcatagtggaactgctg 417
             | |||||| ||||||||||| || || || |||||||||||
Sbjct: 960  caacctcatatacgcaaagaataccgcgtaatggaactgctg 919
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>gb|BT000154.1| Arabidopsis thaliana Unknown protein (At3g28715) mRNA, complete cds
          Length = 1207

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 316  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 375
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1020 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 961

                                                      
Query: 376  tagcctcatgtacgcaaagaaaacagcatagtggaactgctg 417
             | |||||| ||||||||||| || || || |||||||||||
Sbjct: 960  caacctcatatacgcaaagaataccgcgtaatggaactgctg 919
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>gb|AY062635.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 1422

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 316  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 375
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1105 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 1046

                                                      
Query: 376  tagcctcatgtacgcaaagaaaacagcatagtggaactgctg 417
             | |||||| ||||||||||| || || || |||||||||||
Sbjct: 1045 caacctcatatacgcaaagaataccgcgtaatggaactgctg 1004
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>gb|AF428348.1|AF428348 Arabidopsis thaliana AT3g28715/MZN14_21 mRNA, complete cds
          Length = 1382

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 88/102 (86%)
 Strand = Plus / Minus

                                                                        
Query: 316  cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 375
            |||||||||||| ||||| ||||| || |||||||||| |||||| ||||||||||| ||
Sbjct: 1143 cttctggttctgtgcaacacattcagatatccacatcaggttcctgatctcctgctcccg 1084

                                                      
Query: 376  tagcctcatgtacgcaaagaaaacagcatagtggaactgctg 417
             | |||||| ||||||||||| || || || |||||||||||
Sbjct: 1083 caacctcatatacgcaaagaataccgcgtaatggaactgctg 1042
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>gb|AC155348.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1
             clone KBrH097M21, complete sequence
          Length = 131063

 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 85/100 (85%)
 Strand = Plus / Plus

                                                                         
Query: 316   cttctggttctgggcaacgcattcggagatccacatcaagttccttatctcctgctctcg 375
             |||||| ||||| ||||| ||||| || |||||||||| |||||| ||||||||||| | 
Sbjct: 96226 cttctgattctgcgcaacacattccgatatccacatcaggttcctgatctcctgctccct 96285

                                                     
Query: 376   tagcctcatgtacgcaaagaaaacagcatagtggaactgc 415
              | ||||||||| |||||||| || || ||||||||||||
Sbjct: 96286 caacctcatgtaagcaaagaacaccgcgtagtggaactgc 96325
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>gb|AC137994.19| Medicago truncatula clone mth2-23f15, complete sequence
          Length = 131563

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Plus

                                                                          
Query: 435    gcctctttacttcctcctcatagaaagccttgtccaacatctgactttccccatatgata 494
              ||||||| ||||||||||||||||| |||||||| | |||||| || |||||||| ||||
Sbjct: 129739 gcctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgata 129798

                              
Query: 495    tctttgcaaaaataga 510
               ||| ||||| |||||
Sbjct: 129799 acttcgcaaagataga 129814



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Plus

                                                                       
Query: 359    cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 415
              |||||||||||||| | || |||||| || || ||||||||||||||||| ||||||
Sbjct: 129526 cttatctcctgctcccttaacctcatatatgcgaagaaaacagcatagtgaaactgc 129582
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>gb|AC169177.4| Medicago truncatula chromosome 7 BAC clone mth2-1p4, complete sequence
          Length = 124443

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                          
Query: 435    gcctctttacttcctcctcatagaaagccttgtccaacatctgactttccccatatgata 494
              ||||||| ||||||||||||||||| |||||||| | |||||| || |||||||| ||||
Sbjct: 115554 gcctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgata 115495

                              
Query: 495    tctttgcaaaaataga 510
               ||| ||||| |||||
Sbjct: 115494 acttcgcaaagataga 115479



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 66/76 (86%)
 Strand = Plus / Minus

                                                                         
Query: 435   gcctctttacttcctcctcatagaaagccttgtccaacatctgactttccccatatgata 494
             ||||||| ||||||||||||||||| |||||||| | |||||| || |||||||| ||||
Sbjct: 89919 gcctcttgacttcctcctcatagaatgccttgtcaagcatctggctctccccatacgata 89860

                             
Query: 495   tctttgcaaaaataga 510
              ||| ||||| |||||
Sbjct: 89859 acttcgcaaagataga 89844



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                      
Query: 359   cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 415
             |||||||||||||| | || |||||| || |||||||||||||||||||| ||||||
Sbjct: 90132 cttatctcctgctcccttaacctcatatatgcaaagaaaacagcatagtgaaactgc 90076



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 50/57 (87%)
 Strand = Plus / Minus

                                                                       
Query: 359    cttatctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 415
              |||||||||||||| | || |||||| || || ||||||||||||||||| ||||||
Sbjct: 115767 cttatctcctgctcccttaacctcatatatgcgaagaaaacagcatagtgaaactgc 115711



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 47/54 (87%)
 Strand = Plus / Minus

                                                                   
Query: 362   atctcctgctctcgtagcctcatgtacgcaaagaaaacagcatagtggaactgc 415
             ||||||||||| | || |||||| || || ||||||||||||||||| ||||||
Sbjct: 50598 atctcctgctcccttaacctcatatatgcgaagaaaacagcatagtgaaactgc 50545



 Score = 48.1 bits (24), Expect = 0.030
 Identities = 63/76 (82%)
 Strand = Plus / Minus

                                                                         
Query: 435   gcctctttacttcctcctcatagaaagccttgtccaacatctgactttccccatatgata 494
             ||||||| || || ||||||||||| |||||||| | |||||| || || ||||| ||||
Sbjct: 50388 gcctcttgacctcttcctcatagaatgccttgtcaagcatctggctctctccatacgata 50329

                             
Query: 495   tctttgcaaaaataga 510
              ||| ||||| |||||
Sbjct: 50328 acttcgcaaagataga 50313
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>gb|AC157893.2| Medicago truncatula chromosome 7 BAC clone mth2-7m13, complete sequence
          Length = 140479

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 57/65 (87%)
 Strand = Plus / Plus

                                                                         
Query: 446   tcctcctcatagaaagccttgtccaacatctgactttccccatatgatatctttgcaaaa 505
             |||||||| ||||| |||||||| | ||||||||| || |||||||||| ||| ||||||
Sbjct: 64229 tcctcctcctagaatgccttgtcaagcatctgactctctccatatgataacttggcaaaa 64288

                  
Query: 506   ataga 510
             |||||
Sbjct: 64289 ataga 64293
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>gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome 7, complete sequence
          Length = 165569

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 106   ttttattttgctacaaaaacaaataa 131
             ||||||||| ||||||||||||||||
Sbjct: 15585 ttttattttactacaaaaacaaataa 15610
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>gb|AC125226.3| Mus musculus BAC clone RP23-39D21 from 7, complete sequence
          Length = 133624

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 106    ttttattttgctacaaaaacaaataa 131
              ||||||||| ||||||||||||||||
Sbjct: 120438 ttttattttactacaaaaacaaataa 120463
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>emb|AL157897.8| Human DNA sequence from clone RP11-8D22 on chromosome 10, complete
              sequence
          Length = 173310

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 106    ttttattttgctacaaaaacaaataa 131
              ||||||||| ||||||||||||||||
Sbjct: 166832 ttttattttactacaaaaacaaataa 166807
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>emb|CR762487.7| Zebrafish DNA sequence from clone CH211-197G14 in linkage group 13,
             complete sequence
          Length = 219918

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 22    tttacattgccaacaaactgcacaaa 47
             ||||||||||||||||||| ||||||
Sbjct: 41802 tttacattgccaacaaactacacaaa 41827
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>emb|AL121590.11|HSJ167O22 Human DNA sequence from clone RP1-167O22 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 74974

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 70    aaacatcatttatttagttta 90
             |||||||||||||||||||||
Sbjct: 36992 aaacatcatttatttagttta 36972
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 68       ataaacatcatttatttagtt 88
                |||||||||||||||||||||
Sbjct: 25932452 ataaacatcatttatttagtt 25932432
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 68       ataaacatcatttatttagtt 88
                |||||||||||||||||||||
Sbjct: 25860628 ataaacatcatttatttagtt 25860608
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>emb|AL713934.5|CNS07YPF Oryza sativa chromosome 12, . Partial sequence from BAC OJ1257_B09 of
             library Monsanto from chromosome 12 of cultivar Nipponbare
             of ssp. japonica of Oryza sativa (rice), complete sequence
          Length = 61296

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 68    ataaacatcatttatttagtt 88
             |||||||||||||||||||||
Sbjct: 42837 ataaacatcatttatttagtt 42857
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>ref|XM_527029.1| PREDICTED: Pan troglodytes protocadherin alpha 3 (LOC471651), mRNA
          Length = 6684

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 38   actgcacaaatagtgccacccact 61
            ||||||| ||||||||||||||||
Sbjct: 1439 actgcaccaatagtgccacccact 1416
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>gb|AF022647.1| Fusobacterium nucleatum plasmid pPA52, complete sequence
          Length = 6281

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 113  ttgctacaaaaacaaataat 132
            ||||||||||||||||||||
Sbjct: 5207 ttgctacaaaaacaaataat 5226
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>gb|AF159249.1| Fusobacterium nucleatum plasmid pFN1, complete sequence
          Length = 5887

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 113  ttgctacaaaaacaaataat 132
            ||||||||||||||||||||
Sbjct: 2322 ttgctacaaaaacaaataat 2341
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>gb|AC005609.1| Homo sapiens chromosome 5, BAC clone 203o13 (LBNL H155), complete
              sequence
          Length = 157970

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 38     actgcacaaatagtgccacccact 61
              ||||||| ||||||||||||||||
Sbjct: 104078 actgcaccaatagtgccacccact 104101
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>ref|NG_000016.1| Homo sapiens protocadherin alpha cluster (PCDHA@) on chromosome 5
          Length = 297736

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 38    actgcacaaatagtgccacccact 61
             ||||||| ||||||||||||||||
Sbjct: 53893 actgcaccaatagtgccacccact 53870
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>ref|NM_031410.1| Homo sapiens protocadherin alpha 1 (PCDHA1), transcript variant 2,
            mRNA
          Length = 2571

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 38   actgcacaaatagtgccacccact 61
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
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>ref|NM_018900.2| Homo sapiens protocadherin alpha 1 (PCDHA1), transcript variant 1,
            mRNA
          Length = 5260

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 38   actgcacaaatagtgccacccact 61
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 109      tattttgctacaaaaacaaataat 132
                |||||||||| |||||||||||||
Sbjct: 20896600 tattttgctaaaaaaacaaataat 20896577
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>gb|AE017199.1| Nanoarchaeum equitans Kin4-M, complete genome
          Length = 490885

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 110    attttgctacaaaaacaaat 129
              ||||||||||||||||||||
Sbjct: 333714 attttgctacaaaaacaaat 333695
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>gb|AC132388.3| Mus musculus BAC clone RP23-443H3 from chromosome 3, complete sequence
          Length = 200490

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 471   acatctgactttccccatat 490
             ||||||||||||||||||||
Sbjct: 46333 acatctgactttccccatat 46352
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>gb|AC072028.14| Homo sapiens 3 BAC RP11-190C21 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 186739

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 165   catagaaaataggaacaagg 184
             ||||||||||||||||||||
Sbjct: 41380 catagaaaataggaacaagg 41399
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>gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome 3, complete sequence
          Length = 181208

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 471    acatctgactttccccatat 490
              ||||||||||||||||||||
Sbjct: 164976 acatctgactttccccatat 164995
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>ref|XM_648131.1| Entamoeba histolytica HM-1:IMSS conserved hypothetical protein
           (90.t00024) partial mRNA
          Length = 1053

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 168 agaaaataggaacaaggggaataacaaa 195
           ||||||||||||||| || |||||||||
Sbjct: 269 agaaaataggaacaatggtaataacaaa 296
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>emb|Z82899.2|HS181N1 Human DNA sequence from clone RP1-181N1 on chromosome Xq24-25 Contains
             part of the GRIA3 gene for glutamate receptor,
             ionotrophic, AMPA 3, complete sequence
          Length = 126474

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 64    ggaaataaacatcatttatttagt 87
             |||||||||||||| |||||||||
Sbjct: 29309 ggaaataaacatcaattatttagt 29286
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>emb|AL359920.15| Human DNA sequence from clone RP11-359P14 on chromosome 13 Contains a
             novel gene and a TAR DNA binding protein (TARDBP)
             pseudogene, the 5' UTR of a novel gene (FLJ21007) and 2
             CpG islands, complete sequence
          Length = 226860

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   aacagcatagtggaactgct 416
             ||||||||||||||||||||
Sbjct: 30727 aacagcatagtggaactgct 30746
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>gb|AC021026.20| Homo sapiens 3 BAC RP11-85A3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 75555

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 454   atagaaagccttgtccaaca 473
             ||||||||||||||||||||
Sbjct: 73358 atagaaagccttgtccaaca 73339
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>gb|AC009779.18| Homo sapiens 12 BAC RP11-644F5 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 192550

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     aacatcatttatttagttta 90
              ||||||||||||||||||||
Sbjct: 119176 aacatcatttatttagttta 119195
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>gb|AC091966.3| Homo sapiens chromosome 5 clone RP11-489E3, complete sequence
          Length = 91296

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   ctacaaaaacaaataatgat 135
             ||||||||||||||||||||
Sbjct: 47263 ctacaaaaacaaataatgat 47244
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>gb|CP000237.1| Neorickettsia sennetsu strain Miyayama, complete genome
          Length = 859006

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 491    gatatctttgcaaaaataga 510
              ||||||||||||||||||||
Sbjct: 171660 gatatctttgcaaaaataga 171679
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>gb|AE017340.1| Idiomarina loihiensis L2TR, complete genome
          Length = 2839318

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 152     agcttttcagccgcatagaa 171
               ||||||||||||||||||||
Sbjct: 1463892 agcttttcagccgcatagaa 1463873
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>gb|AC127321.4| Mus musculus BAC clone RP23-231A8 from chromosome 8, complete sequence
          Length = 220673

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 23     ttacattgccaacaaactgcacaa 46
              |||||||||||||||| |||||||
Sbjct: 206650 ttacattgccaacaaaatgcacaa 206627
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>gb|AC008775.7| Homo sapiens chromosome 5 clone CTD-2019N2, complete sequence
          Length = 135503

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    ataaacatcatttatttagt 87
             ||||||||||||||||||||
Sbjct: 68625 ataaacatcatttatttagt 68606
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 102      cgccttttattttgctacaa 121
                ||||||||||||||||||||
Sbjct: 13032605 cgccttttattttgctacaa 13032586
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 109      tattttgctacaaaaacaaataat 132
                |||||||||| |||||||||||||
Sbjct: 20889629 tattttgctaaaaaaacaaataat 20889606
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>gb|AC146468.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0008D12
             map MAP_LOC, complete sequence
          Length = 167323

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 109   tattttgctacaaaaacaaataat 132
             |||||||||| |||||||||||||
Sbjct: 25912 tattttgctaaaaaaacaaataat 25935
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>gb|AC020890.22| Homo sapiens 3 BAC RP11-79L9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 152005

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 454    atagaaagccttgtccaaca 473
              ||||||||||||||||||||
Sbjct: 134690 atagaaagccttgtccaaca 134671
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>dbj|AP003433.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0004D12
          Length = 138136

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    tacattttacattgccaaca 36
             ||||||||||||||||||||
Sbjct: 88544 tacattttacattgccaaca 88525
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>dbj|AP003763.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0531C01
          Length = 158574

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   cgccttttattttgctacaa 121
             ||||||||||||||||||||
Sbjct: 71406 cgccttttattttgctacaa 71387
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>dbj|AP003619.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0577H07
          Length = 126757

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 102    cgccttttattttgctacaa 121
              ||||||||||||||||||||
Sbjct: 114982 cgccttttattttgctacaa 114963
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>dbj|AB024028.1| Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K1G2
          Length = 70952

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 247   tttgtacagccatatgcaca 266
             ||||||||||||||||||||
Sbjct: 66000 tttgtacagccatatgcaca 66019
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>emb|CT967325.1| Zebrafish DNA sequence from clone DKEY-25K11, complete sequence
          Length = 267826

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 108   ttattttgctacaaaaacaaataa 131
             ||||||||| ||||||||||||||
Sbjct: 81817 ttattttgcaacaaaaacaaataa 81794
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>emb|AL935332.12| Zebrafish DNA sequence from clone DKEY-77F17 in linkage group 18,
             complete sequence
          Length = 139084

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 108   ttattttgctacaaaaacaaataa 131
             ||||||||| ||||||||||||||
Sbjct: 17281 ttattttgcaacaaaaacaaataa 17258
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>gb|AF152305.1|AF152305 Homo sapiens protocadherin alpha 1 (PCDH-alpha1) mRNA, complete cds
          Length = 5260

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 38   actgcacaaatagtgccacccact 61
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
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>gb|AF152479.1|AF152479 Homo sapiens protocadherin alpha 1 short form protein (PCDH-alpha1)
            variable region sequence, complete cds
          Length = 2424

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 38   actgcacaaatagtgccacccact 61
            ||||||| ||||||||||||||||
Sbjct: 1730 actgcaccaatagtgccacccact 1707
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>emb|CT010505.18| Mouse DNA sequence from clone RP23-99P18 on chromosome 16, complete
             sequence
          Length = 229346

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 303   catggaccctgttcttctgg 322
             ||||||||||||||||||||
Sbjct: 91184 catggaccctgttcttctgg 91203
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>gb|AC125369.4| Mus musculus BAC clone RP24-380D10 from 8, complete sequence
          Length = 169338

 Score = 40.1 bits (20), Expect = 7.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 23     ttacattgccaacaaactgcacaa 46
              |||||||||||||||| |||||||
Sbjct: 143016 ttacattgccaacaaaatgcacaa 143039


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,889,133
Number of Sequences: 3902068
Number of extensions: 5889133
Number of successful extensions: 103351
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 102988
Number of HSP's gapped (non-prelim): 361
length of query: 541
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 518
effective length of database: 17,143,297,704
effective search space: 8880228210672
effective search space used: 8880228210672
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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