ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbaal34d05 |
|---|---|
| Clone Library Name | barley_pub |
>HEATR_DROME (Q9VM75) Hypothetical protein CG10805| Length = 2096 Score = 36.6 bits (83), Expect = 0.038 Identities = 18/55 (32%), Positives = 28/55 (50%) Frame = +3 Query: 168 FSFHLIMSTNT*AVPATXLQQDAEEARLCLRVLKAXLQEILLDGGGQPRRGTWVR 332 F L+ +T A+ +T Q +E RLCLR+L+ ++ + QP R W R Sbjct: 759 FLLTLVKNTKWTALASTPWNQMTDELRLCLRLLEIICAQVFSEKADQPERQEWTR 813
>N4BP2_HUMAN (Q86UW6) NEDD4-binding protein 2 (EC 3.-.-.-) (N4BP2) (BCL-3-binding| protein) Length = 1770 Score = 35.8 bits (81), Expect = 0.065 Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 5/80 (6%) Frame = -3 Query: 446 IDLCGLHASEAMHVLNNELNNRRKIARSTGRRLQAIIISNPRTP-----ARLTAAIEQYL 282 +DL GLH EA+ L L + + + G + +I+ AR+ A+ +YL Sbjct: 1691 LDLHGLHVDEALEHLMRVLEKKTEEFKQNGGKPYLSVITGRGNHSQGGVARIKPAVIKYL 1750 Query: 281 LEXGLQYTQAQPGLFRVLLQ 222 + ++++ +PG +V+L+ Sbjct: 1751 ISHSFRFSEIKPGCLKVMLK 1770
>CD2_RAT (P08921) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (OX-34 antigen) Length = 344 Score = 33.1 bits (74), Expect = 0.42 Identities = 23/60 (38%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Frame = -2 Query: 357 PPAPGHHNI*PTY-PCEVDRRHRAVSPGARP-----SVHAGTAGPLPRPAAVK*QGPPRC 196 PP PGHH P + P R+R P RP VH PLPRP Q P C Sbjct: 277 PPPPGHHLQTPGHRPLPPSHRNREHQPKKRPPPSGTQVHQQKGPPLPRPRV---QPKPPC 333
>IF2_MYCTU (P65131) Translation initiation factor IF-2| Length = 900 Score = 31.6 bits (70), Expect = 1.2 Identities = 32/96 (33%), Positives = 35/96 (36%), Gaps = 6/96 (6%) Frame = -2 Query: 471 PHPGAESCNRPLWSSCK*GDARPE----Q*TQQQEEDRPIHGPPAPGHHNI*PTYPCEVD 304 PHPG RP K G P + Q DRPI PPAP P P Sbjct: 129 PHPGMAPGARP-GPVPKPGIRTPRVGNNPFSSAQPADRPIPRPPAPRPGTARPGVP---- 183 Query: 303 RRHRAVSPGARPSVHAGTAGPL--PRPAAVK*QGPP 202 SPG+ P G G PRP A + G P Sbjct: 184 --RPGASPGSMPPRPGGAVGGARPPRPGAPRPGGRP 217
>IF2_MYCBO (P65132) Translation initiation factor IF-2| Length = 900 Score = 31.6 bits (70), Expect = 1.2 Identities = 32/96 (33%), Positives = 35/96 (36%), Gaps = 6/96 (6%) Frame = -2 Query: 471 PHPGAESCNRPLWSSCK*GDARPE----Q*TQQQEEDRPIHGPPAPGHHNI*PTYPCEVD 304 PHPG RP K G P + Q DRPI PPAP P P Sbjct: 129 PHPGMAPGARP-GPVPKPGIRTPRVGNNPFSSAQPADRPIPRPPAPRPGTARPGVP---- 183 Query: 303 RRHRAVSPGARPSVHAGTAGPL--PRPAAVK*QGPP 202 SPG+ P G G PRP A + G P Sbjct: 184 --RPGASPGSMPPRPGGAVGGARPPRPGAPRPGGRP 217
>DECR2_PONPY (Q5RBV3) Peroxisomal 2,4-dienoyl-CoA reductase (EC 1.3.1.34)| (2,4-dienoyl-CoA reductase 2) Length = 292 Score = 31.6 bits (70), Expect = 1.2 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = -3 Query: 434 GLHASEAMHVLNNELNNRRKIARSTGRRLQAIIISNPRTPARLTAAIEQYLLEXG 270 G H A L L RK+A +TGRR + + + R P + AA++Q L E G Sbjct: 52 GCHTVIASRSLPRVLTAARKLAGATGRRCLPLSM-DVRAPPAIVAAVDQALKEFG 105
>TTLL5_CERAE (Q6EEF3) Tubulin--tyrosine ligase-like protein 5 (SRC1 and| TIF2-associated modulatory protein) Length = 1295 Score = 31.6 bits (70), Expect = 1.2 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 7/60 (11%) Frame = -2 Query: 354 PAPGHHN-------I*PTYPCEVDRRHRAVSPGARPSVHAGTAGPLPRPAAVK*QGPPRC 196 P PGHH+ P+ P + VS A PS+H GT +P PA G PRC Sbjct: 924 PGPGHHSSLSQIPSAIPSMPHQPTILLNTVSASASPSLHPGTQN-IPSPA-----GLPRC 977
>CPHA_SYNY3 (P73833) Cyanophycin synthetase (EC 6.-.-.-)| Length = 873 Score = 31.2 bits (69), Expect = 1.6 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +3 Query: 267 KAXLQEILLDGGGQPRRGTWVRYYDGLEPAARGSGDLPPVVE 392 K + IL D G RGT ++Y+D LE A G P V++ Sbjct: 220 KEGTKTILQDAGIPVPRGTTIQYFDDLEEAINDVGGYPVVIK 261
>Y1626_HAEIN (P44278) Hypothetical protein HI1626| Length = 238 Score = 30.8 bits (68), Expect = 2.1 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +2 Query: 44 FYNVFADKKSLIYQHYNQLFVAVSFLFCYSSLPYTVQVILFFF 172 F N+F K +Y+ ++ ++ A + +F +L Y QV+ F F Sbjct: 49 FLNLFKGKNLELYKKWSVIYFAAAVIFAIPALIYNWQVLYFMF 91
>DECR2_HUMAN (Q9NUI1) Peroxisomal 2,4-dienoyl-CoA reductase (EC 1.3.1.34)| (2,4-dienoyl-CoA reductase 2) (pDCR) Length = 292 Score = 30.8 bits (68), Expect = 2.1 Identities = 20/55 (36%), Positives = 28/55 (50%) Frame = -3 Query: 434 GLHASEAMHVLNNELNNRRKIARSTGRRLQAIIISNPRTPARLTAAIEQYLLEXG 270 G H A L L RK+A +TGRR + + + R P + AA++Q L E G Sbjct: 52 GCHTVIASRSLPRVLTAARKLAGATGRRCLPLSM-DVRAPPAVMAAVDQALKEFG 105
>LONH3_ARATH (Q9M9L8) Putative Lon protease homolog 3, mitochondrial precursor| (EC 3.4.21.-) Length = 924 Score = 30.4 bits (67), Expect = 2.7 Identities = 22/77 (28%), Positives = 37/77 (48%) Frame = -3 Query: 479 LQGLIQEQNPAIDLCGLHASEAMHVLNNELNNRRKIARSTGRRLQAIIISNPRTPARLTA 300 + G + ++ IDL G E MH+ + L +K R G + + + +S+ A L + Sbjct: 569 IPGPLLDRMEVIDLSGYVTDEKMHIARDYL--VKKTCRDCGIKPEHVDLSD----AALLS 622 Query: 299 AIEQYLLEXGLQYTQAQ 249 IE Y E G++ Q Q Sbjct: 623 LIENYCREAGVRNLQKQ 639
>PRP2_MOUSE (P05142) Proline-rich protein MP-2 precursor| Length = 261 Score = 30.0 bits (66), Expect = 3.6 Identities = 22/68 (32%), Positives = 24/68 (35%), Gaps = 9/68 (13%) Frame = -2 Query: 378 EDRPIHGPPAPGHHNI*PTY---------PCEVDRRHRAVSPGARPSVHAGTAGPLPRPA 226 + RP GPP PG + P P P RP T GP PRP Sbjct: 129 QPRPPQGPPPPGGPQLRPPQGPPPPAGPQPRPPQGPPPPAGPQPRPPQGPPTTGPQPRPT 188 Query: 225 AVK*QGPP 202 QGPP Sbjct: 189 ----QGPP 192
>MECP2_HUMAN (P51608) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)| Length = 486 Score = 29.6 bits (65), Expect = 4.7 Identities = 16/61 (26%), Positives = 28/61 (45%) Frame = -2 Query: 387 QQEEDRPIHGPPAPGHHNI*PTYPCEVDRRHRAVSPGARPSVHAGTAGPLPRPAAVK*QG 208 ++EE H P P H+ P E + + G+ P+V +A P R + ++ +G Sbjct: 35 KKEEKEGKHEPVQPSAHH--SAEPAEAGKAETSEGSGSAPAVPEASASPKQRRSIIRDRG 92 Query: 207 P 205 P Sbjct: 93 P 93
>MECP2_RAT (Q00566) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)| Length = 492 Score = 29.6 bits (65), Expect = 4.7 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = -2 Query: 387 QQEEDRPIHGPPAPGHHNI*PTYPCEVDRRHRAVSPGARPSVHAGTAGPLPRPAAVK*QG 208 ++E+ H P P H+ P E + + S G+ P+V +A P R + ++ +G Sbjct: 35 KKEDKEGKHEPLQPSAHH--SAEPAEAGKAETSESSGSAPAVPEASASPKQRRSIIRDRG 92 Query: 207 P 205 P Sbjct: 93 P 93
>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2| Length = 969 Score = 29.6 bits (65), Expect = 4.7 Identities = 28/76 (36%), Positives = 30/76 (39%), Gaps = 3/76 (3%) Frame = -2 Query: 417 GDARPEQ*TQQQEEDRPIHGPPAPGHHNI*PTYPCEVDRRHRAVSPGA---RPSVHAGTA 247 G RP Q QQQ P G P PG P P V + P RP+ G Sbjct: 146 GGPRPGQ--QQQRPGAPAQGGPRPGPKPG-PKTP-RVGNNPYSSQPAPERERPAARPGPG 201 Query: 246 GPLPRPAAVK*QGPPR 199 GP P PA QG PR Sbjct: 202 GPRPGPA----QGGPR 213
>MECP2_MOUSE (Q9Z2D6) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)| Length = 484 Score = 29.6 bits (65), Expect = 4.7 Identities = 16/61 (26%), Positives = 29/61 (47%) Frame = -2 Query: 387 QQEEDRPIHGPPAPGHHNI*PTYPCEVDRRHRAVSPGARPSVHAGTAGPLPRPAAVK*QG 208 ++E+ H P P H+ P E + + S G+ P+V +A P R + ++ +G Sbjct: 35 KKEDKEGKHEPLQPSAHH--SAEPAEAGKAETSESSGSAPAVPEASASPKQRRSIIRDRG 92 Query: 207 P 205 P Sbjct: 93 P 93
>IF2_THEFY (Q47RV1) Translation initiation factor IF-2| Length = 955 Score = 29.6 bits (65), Expect = 4.7 Identities = 32/121 (26%), Positives = 39/121 (32%), Gaps = 21/121 (17%) Frame = -2 Query: 498 ENPNAXVARPHPGAESCNRPL--------------------WSSCK*GDARPEQ*TQQQE 379 E P V +P PG + RP+ S G ARPE + Sbjct: 91 ETPRPAVPKPGPGLKPGPRPVPKPGPRPGPRPEGGAGKAGQQPSGAQGPARPES----GK 146 Query: 378 EDRPIHGP-PAPGHHNI*PTYPCEVDRRHRAVSPGARPSVHAGTAGPLPRPAAVK*QGPP 202 RP+ P P PG++ P P RP GT P P P PP Sbjct: 147 TPRPVPKPGPRPGNN------PFSSTASGMGTRPTPRPPASGGTGAPRPGPRPHPGMMPP 200 Query: 201 R 199 R Sbjct: 201 R 201
>STP4_ARATH (Q39228) Sugar transport protein 4 (Hexose transporter 4)| Length = 514 Score = 29.3 bits (64), Expect = 6.1 Identities = 10/22 (45%), Positives = 17/22 (77%) Frame = +3 Query: 129 THLCHIQYRSFFFFSFHLIMST 194 T LCH+++ FFFF+F +++ T Sbjct: 444 TMLCHMKFGLFFFFAFFVVIMT 465
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 29.3 bits (64), Expect = 6.1 Identities = 34/111 (30%), Positives = 43/111 (38%), Gaps = 20/111 (18%) Frame = -2 Query: 471 PHPGAESCNRPLWSSCK*GDARPEQ*-------TQQQEED--RPIHGP-PAPGHHNI*PT 322 P PG+ S +P SS A P + QQE +P P P PG + P Sbjct: 101 PRPGSSSGPKPGRSSAARTSATPRPGLIKSSGASSQQEPPAAKPESKPTPKPGQNVPKPH 160 Query: 321 YPCEVDRR---HRAVSPGARPSVHAG-------TAGPLPRPAAVK*QGPPR 199 P + ++ PGARP G A P PRP A + G PR Sbjct: 161 APAPKPKPGAPSKSPKPGARPGPRPGGSAGLPSAARPGPRPGAGRRTGAPR 211
>CHSS2_MOUSE (Q6IQX7) Chondroitin sulfate synthase 2 (EC 2.4.1.175)| (Glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase II) (N-acetylgalactosaminyl-proteoglycan 3-beta-glucuronosyltransferase II) (EC 2.4.1.226) (Chon Length = 774 Score = 29.3 bits (64), Expect = 6.1 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%) Frame = -2 Query: 360 GPPAPGHHNI*PTYPCEVDRRHRAVSPGA---RPSVHAGT 250 GPP PG + P RR +V PG+ RP AGT Sbjct: 41 GPPQPGDSELPPRGNTNAARRPNSVQPGSERERPGAGAGT 80
>COBA1_BOVIN (Q28083) Collagen alpha-1(XI) chain precursor (Fragment)| Length = 911 Score = 28.9 bits (63), Expect = 7.9 Identities = 16/28 (57%), Positives = 17/28 (60%) Frame = -2 Query: 285 SPGARPSVHAGTAGPLPRPAAVK*QGPP 202 SPG R S AGTAGP+ P QGPP Sbjct: 825 SPGERGS--AGTAGPIGLPGRPGPQGPP 850
>AMBN_HUMAN (Q9NP70) Ameloblastin precursor| Length = 447 Score = 28.9 bits (63), Expect = 7.9 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 9/59 (15%) Frame = -2 Query: 402 EQ*TQQQEEDRPIHGPPAPGHHNI*PTYP---------CEVDRRHRAVSPGARPSVHAG 253 E TQQ E P+H PP P ++ P P + A+ +P +H G Sbjct: 93 EHETQQYEYSLPVHPPPLPSQPSLKPQQPGLKPFLQSAAATTNQATALKEALQPPIHLG 151
>CD2_MOUSE (P08920) T-cell surface antigen CD2 precursor (T-cell surface| antigen T11/Leu-5) (LFA-2) (LFA-3 receptor) (Lymphocyte antigen Ly-37) Length = 344 Score = 28.9 bits (63), Expect = 7.9 Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Frame = -2 Query: 366 IHGPPAPGHHNI*PTYPCEVDRRHRAVSPGARPSVHAGTAGPLPRPAAVK*Q-GPP 202 + PP PGHH P HR + PG R H P P + Q GPP Sbjct: 273 LQAPPPPGHHLQTP--------GHRPLPPGHRTREHQQKKRPPPSGTQIHQQKGPP 320
>P5CS_LYCES (Q96480) Delta 1-pyrroline-5-carboxylate synthetase (P5CS)| [Includes: Glutamate 5-kinase (EC 2.7.2.11) (Gamma-glutamyl kinase) (GK); Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41) (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamm Length = 717 Score = 28.9 bits (63), Expect = 7.9 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = +2 Query: 107 AVSFLFCYSSLPYTVQVILFFFISSDHVHKH 199 A +F YSSL TV+V+ + + DH+H+H Sbjct: 590 ARTFRHEYSSLACTVEVVEDVYAAIDHIHQH 620 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 71,119,908 Number of Sequences: 219361 Number of extensions: 1504700 Number of successful extensions: 4083 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3897 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4073 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3523384522 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
